Wall clock time and date at job start Wed Apr 1 2020 05:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46509 * 109.45530 * 2 1 4 4 C 1.36936 * 119.99721 * 60.00744 * 3 2 1 5 5 H 1.08000 * 119.99815 * 359.97438 * 4 3 2 6 6 C 1.38805 * 119.99693 * 179.97438 * 4 3 2 7 7 N 1.31620 * 120.00173 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00044 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47649 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.46836 * 299.99788 * 8 6 4 11 11 H 1.48502 * 109.47335 * 59.99372 * 8 6 4 12 12 C 1.53036 * 109.46474 * 119.97500 * 2 1 3 13 13 C 1.53158 * 109.33119 * 181.38783 * 12 2 1 14 14 N 1.46926 * 108.76582 * 305.35902 * 13 12 2 15 15 C 1.34777 * 120.62792 * 233.58486 * 14 13 12 16 16 O 1.21553 * 120.00243 * 172.08891 * 15 14 13 17 17 C 1.47885 * 119.99916 * 352.08788 * 15 14 13 18 18 C 1.39289 * 119.60765 * 170.30733 * 17 15 14 19 19 C 1.38535 * 119.12122 * 179.83091 * 18 17 15 20 20 C 1.38920 * 118.53736 * 0.50181 * 19 18 17 21 21 C 1.39721 * 119.42485 * 359.65138 * 20 19 18 22 22 N 1.31992 * 120.37265 * 0.12805 * 21 20 19 23 23 O 1.35995 * 120.44350 * 180.27344 * 21 20 19 24 24 C 1.43137 * 116.71269 * 342.56105 * 23 21 20 25 25 C 1.53462 * 108.33040 * 46.51917 * 24 23 21 26 26 O 1.35779 * 119.57685 * 179.55937 * 20 19 18 27 27 C 1.46928 * 118.74436 * 53.60661 * 14 13 12 28 28 C 1.53042 * 109.46052 * 240.03513 * 2 1 3 29 29 H 1.08994 * 109.47232 * 60.00154 * 1 2 3 30 30 H 1.09001 * 109.46397 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47227 * 299.99398 * 1 2 3 32 32 H 0.96998 * 119.99589 * 239.99726 * 3 2 1 33 33 H 0.96992 * 119.99902 * 359.97438 * 7 6 4 34 34 H 1.09006 * 109.49632 * 301.32582 * 12 2 1 35 35 H 1.08996 * 109.49507 * 61.41783 * 12 2 1 36 36 H 1.08995 * 109.59002 * 185.56891 * 13 12 2 37 37 H 1.09009 * 109.59131 * 65.13864 * 13 12 2 38 38 H 1.08000 * 120.43886 * 0.07956 * 18 17 15 39 39 H 1.07994 * 120.72920 * 180.24737 * 19 18 17 40 40 H 1.09008 * 109.69145 * 166.22729 * 24 23 21 41 41 H 1.08998 * 109.69665 * 286.80300 * 24 23 21 42 42 H 1.08994 * 109.71395 * 59.78807 * 25 24 23 43 43 H 1.09005 * 109.71463 * 180.38327 * 25 24 23 44 44 H 1.08994 * 109.58972 * 186.60320 * 27 14 13 45 45 H 1.09003 * 109.58303 * 66.17482 * 27 14 13 46 46 H 1.09004 * 109.49408 * 298.57308 * 28 2 1 47 47 H 1.08997 * 109.50341 * 58.63605 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6871 2.2244 1.0271 5 1 1.0660 1.8710 1.8369 6 6 2.1498 3.5331 1.0274 7 7 2.9071 3.9635 0.0407 8 14 1.6978 4.6833 2.4281 9 1 2.3121 6.0148 2.1933 10 1 0.2211 4.8250 2.4953 11 1 2.2003 4.1248 3.7091 12 6 2.0400 -0.7209 1.2499 13 6 3.5712 -0.6889 1.2644 14 7 4.0677 -1.2491 0.0002 15 6 4.9618 -2.2576 0.0002 16 8 5.2565 -2.8087 -1.0424 17 6 5.5843 -2.6938 1.2688 18 6 6.3471 -3.8589 1.2960 19 6 6.9286 -4.2563 2.4890 20 6 6.7186 -3.4788 3.6210 21 6 5.9395 -2.3230 3.5250 22 7 5.4047 -1.9726 2.3703 23 8 5.7252 -1.5437 4.6188 24 6 5.9866 -2.1388 5.8941 25 6 7.3435 -2.8523 5.8247 26 8 7.2711 -3.8535 4.8033 27 6 3.5714 -0.6888 -1.2642 28 6 2.0399 -0.7207 -1.2501 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 2.5756 1.6988 -0.7275 33 1 3.1421 3.3662 -0.6864 34 1 1.6575 -0.2209 2.1398 35 1 1.6978 -1.7557 1.2381 36 1 3.9413 -1.2848 2.0986 37 1 3.9143 0.3407 1.3675 38 1 6.4868 -4.4426 0.3982 39 1 7.5284 -5.1530 2.5388 40 1 6.0173 -1.3649 6.6612 41 1 5.2040 -2.8599 6.1303 42 1 8.1249 -2.1330 5.5798 43 1 7.5623 -3.3203 6.7845 44 1 3.9417 -1.2847 -2.0983 45 1 3.9145 0.3407 -1.3672 46 1 1.6977 -1.7556 -1.2384 47 1 1.6570 -0.2211 -2.1399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733865182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:31 Heat of formation + Delta-G solvation = -22.947502 kcal Electronic energy + Delta-G solvation = -31969.072439 eV Core-core repulsion = 27733.397486 eV Total energy + Delta-G solvation = -4235.674953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.87411 -40.24292 -38.65990 -37.76070 -37.56735 -34.63011 -32.86730 -32.27350 -31.77191 -30.60157 -29.22469 -28.60642 -27.64930 -25.63658 -24.63085 -23.70723 -22.95440 -22.62642 -21.77040 -20.30965 -19.06890 -18.42231 -18.21091 -17.77772 -16.96634 -16.71281 -16.15466 -15.73507 -15.42018 -15.22063 -14.89485 -14.77108 -14.70153 -14.21273 -13.96481 -13.90110 -13.71627 -13.52770 -13.32111 -13.04861 -12.79852 -12.48435 -12.22284 -11.92185 -11.64325 -11.52820 -11.47356 -11.29852 -11.14008 -10.76343 -10.62131 -10.55226 -10.29428 -10.10623 -9.91736 -9.79911 -9.72867 -9.01563 -8.97009 -8.64523 -8.60088 -8.12143 -6.93632 -6.00555 -2.99945 0.42770 0.87729 2.27675 2.58542 2.77038 3.25405 3.55205 3.58647 3.63000 3.64975 3.75810 4.05249 4.28524 4.39663 4.48348 4.62377 4.73079 4.77495 4.92066 5.03632 5.05764 5.31445 5.37706 5.41390 5.45157 5.63720 5.66340 5.74160 5.87427 5.93226 5.97592 6.11217 6.14491 6.23280 6.28363 6.37457 6.40860 6.57249 6.66093 6.69934 6.77431 6.85265 7.07126 7.08549 7.14796 7.51051 7.79327 7.90185 8.33544 8.84061 9.31313 10.17894 10.33894 11.47519 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010505 B = 0.003859 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.744889 B = 7254.261756 C = 9062.547221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.201 3.799 3 N -0.727 5.727 4 C -0.317 4.317 5 H 0.064 0.936 6 C -0.045 4.045 7 N -0.946 5.946 8 Si 1.075 2.925 9 H -0.287 1.287 10 H -0.297 1.297 11 H -0.296 1.296 12 C -0.133 4.133 13 C 0.085 3.915 14 N -0.574 5.574 15 C 0.568 3.432 16 O -0.549 6.549 17 C 0.094 3.906 18 C -0.107 4.107 19 C -0.080 4.080 20 C 0.027 3.973 21 C 0.257 3.743 22 N -0.423 5.423 23 O -0.287 6.287 24 C 0.024 3.976 25 C 0.017 3.983 26 O -0.301 6.301 27 C 0.114 3.886 28 C -0.129 4.129 29 H 0.047 0.953 30 H 0.035 0.965 31 H 0.056 0.944 32 H 0.366 0.634 33 H 0.254 0.746 34 H 0.073 0.927 35 H 0.042 0.958 36 H 0.133 0.867 37 H 0.083 0.917 38 H 0.159 0.841 39 H 0.154 0.846 40 H 0.132 0.868 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.128 0.872 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.734 -18.244 10.327 22.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.110 3.890 3 N -0.371 5.371 4 C -0.448 4.448 5 H 0.082 0.918 6 C -0.243 4.243 7 N -0.592 5.592 8 Si 0.907 3.093 9 H -0.213 1.213 10 H -0.225 1.225 11 H -0.224 1.224 12 C -0.174 4.174 13 C -0.037 4.037 14 N -0.303 5.303 15 C 0.354 3.646 16 O -0.428 6.428 17 C -0.043 4.043 18 C -0.128 4.128 19 C -0.106 4.106 20 C -0.021 4.021 21 C 0.076 3.924 22 N -0.146 5.146 23 O -0.196 6.196 24 C -0.052 4.052 25 C -0.058 4.058 26 O -0.214 6.214 27 C -0.008 4.008 28 C -0.168 4.168 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.200 0.800 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.149 0.851 37 H 0.101 0.899 38 H 0.177 0.823 39 H 0.172 0.828 40 H 0.150 0.850 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.146 0.854 44 H 0.103 0.897 45 H 0.092 0.908 46 H 0.082 0.918 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.451 -16.237 10.623 20.785 hybrid contribution 0.272 -1.931 -0.316 1.976 sum 7.722 -18.169 10.307 22.271 Atomic orbital electron populations 1.22197 0.97683 0.98862 1.02008 1.19503 0.92024 0.85737 0.91764 1.42490 1.61201 1.06685 1.26691 1.19901 1.29204 0.94331 1.01404 0.91828 1.25609 0.99205 0.95961 1.03504 1.70877 1.39088 1.37905 1.11367 0.83303 0.75233 0.76342 0.74458 1.21252 1.22515 1.22407 1.22312 0.95750 0.98474 1.00825 1.22923 0.93804 1.01690 0.85249 1.48028 1.40321 1.32830 1.09133 1.17659 0.79961 0.80289 0.86661 1.90751 1.64159 1.56069 1.31787 1.20980 0.98703 0.93179 0.91478 1.21880 0.96021 0.96188 0.98756 1.20882 1.00193 1.00670 0.88871 1.19949 0.97502 0.96693 0.87984 1.19669 0.94196 0.89922 0.88643 1.67167 1.18587 1.31651 0.97244 1.86329 1.83594 1.37446 1.12182 1.23795 0.97024 1.00504 0.83869 1.23772 0.97950 0.92061 0.92036 1.86252 1.77006 1.37892 1.20212 1.21636 0.94379 0.99124 0.85697 1.22092 0.94770 1.00572 0.99352 0.93376 0.94643 0.92529 0.80003 0.93515 0.90844 0.93882 0.85127 0.89864 0.82321 0.82848 0.84992 0.89886 0.89837 0.85410 0.89697 0.90760 0.91776 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.44 37.16 0.31 -2.47 16 2 C 0.20 3.96 0.74 -131.77 -0.10 3.86 16 3 N -0.73 -17.38 4.13 -47.19 -0.19 -17.57 16 4 C -0.32 -8.52 8.68 -15.06 -0.13 -8.65 16 5 H 0.06 1.70 6.70 -52.49 -0.35 1.35 16 6 C -0.05 -1.29 5.50 -17.43 -0.10 -1.39 16 7 N -0.95 -28.97 13.70 55.49 0.76 -28.21 16 8 Si 1.07 25.95 29.92 -169.99 -5.09 20.86 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.30 -6.87 7.11 56.52 0.40 -6.46 16 12 C -0.13 -2.52 4.70 -26.63 -0.13 -2.65 16 13 C 0.08 1.62 5.61 -3.73 -0.02 1.60 16 14 N -0.57 -10.49 2.97 -173.88 -0.52 -11.01 16 15 C 0.57 10.05 7.64 -12.31 -0.09 9.96 16 16 O -0.55 -10.39 15.78 5.32 0.08 -10.31 16 17 C 0.09 1.44 6.57 -83.07 -0.55 0.90 16 18 C -0.11 -1.30 9.62 -39.08 -0.38 -1.67 16 19 C -0.08 -0.82 10.08 -39.22 -0.40 -1.22 16 20 C 0.03 0.31 6.51 -38.78 -0.25 0.06 16 21 C 0.26 3.55 7.55 -16.93 -0.13 3.42 16 22 N -0.42 -6.75 6.13 -9.70 -0.06 -6.81 16 23 O -0.29 -3.69 10.51 -32.33 -0.34 -4.03 16 24 C 0.02 0.18 7.24 37.40 0.27 0.45 16 25 C 0.02 0.11 7.26 37.40 0.27 0.38 16 26 O -0.30 -2.84 10.42 -31.66 -0.33 -3.17 16 27 C 0.11 2.04 6.17 -3.71 -0.02 2.01 16 28 C -0.13 -2.24 4.96 -26.61 -0.13 -2.37 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.14 7.27 -51.93 -0.38 0.76 16 32 H 0.37 9.19 5.29 -40.82 -0.22 8.97 16 33 H 0.25 7.67 6.77 -40.82 -0.28 7.39 16 34 H 0.07 1.49 7.32 -51.93 -0.38 1.11 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.13 2.41 4.02 -84.82 -0.34 2.06 16 37 H 0.08 1.90 7.74 -51.92 -0.40 1.50 16 38 H 0.16 1.69 7.66 -52.49 -0.40 1.29 16 39 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.13 0.59 8.14 -51.92 -0.42 0.16 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.13 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 1.45 7.00 -51.93 -0.36 1.09 16 45 H 0.07 1.44 6.94 -51.93 -0.36 1.08 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 370.20 15.07 5.58 5.58 Total: -1.00 -34.06 370.20 -8.16 -42.22 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -6.49 Total: 10.25 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -1.56 Total: 2.21 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: -0.01 Total: -63.61 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.59 Total: -17.50 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.09 Total: 20.86 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.06 -8.16 -42.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733865182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.269 kcal (2) G-P(sol) polarization free energy of solvation -34.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds