Wall clock time and date at job start Wed Apr 1 2020 05:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46509 * 109.45530 * 2 1 4 4 C 1.36936 * 119.99721 * 60.00744 * 3 2 1 5 5 H 1.08000 * 119.99815 * 359.97438 * 4 3 2 6 6 C 1.38805 * 119.99693 * 179.97438 * 4 3 2 7 7 N 1.31620 * 120.00173 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00044 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47649 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.46836 * 299.99788 * 8 6 4 11 11 H 1.48502 * 109.47335 * 59.99372 * 8 6 4 12 12 C 1.53036 * 109.46474 * 119.97500 * 2 1 3 13 13 C 1.53158 * 109.33119 * 181.38783 * 12 2 1 14 14 N 1.46926 * 108.76582 * 305.35902 * 13 12 2 15 15 C 1.34777 * 120.62792 * 233.58486 * 14 13 12 16 16 O 1.21553 * 120.00243 * 172.08891 * 15 14 13 17 17 C 1.47885 * 119.99916 * 352.08788 * 15 14 13 18 18 C 1.39289 * 119.60765 * 170.30733 * 17 15 14 19 19 C 1.38535 * 119.12122 * 179.83091 * 18 17 15 20 20 C 1.38920 * 118.53736 * 0.50181 * 19 18 17 21 21 C 1.39721 * 119.42485 * 359.65138 * 20 19 18 22 22 N 1.31992 * 120.37265 * 0.12805 * 21 20 19 23 23 O 1.35995 * 120.44350 * 180.27344 * 21 20 19 24 24 C 1.43137 * 116.71269 * 342.56105 * 23 21 20 25 25 C 1.53462 * 108.33040 * 46.51917 * 24 23 21 26 26 O 1.35779 * 119.57685 * 179.55937 * 20 19 18 27 27 C 1.46928 * 118.74436 * 53.60661 * 14 13 12 28 28 C 1.53042 * 109.46052 * 240.03513 * 2 1 3 29 29 H 1.08994 * 109.47232 * 60.00154 * 1 2 3 30 30 H 1.09001 * 109.46397 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47227 * 299.99398 * 1 2 3 32 32 H 0.96998 * 119.99589 * 239.99726 * 3 2 1 33 33 H 0.96992 * 119.99902 * 359.97438 * 7 6 4 34 34 H 1.09006 * 109.49632 * 301.32582 * 12 2 1 35 35 H 1.08996 * 109.49507 * 61.41783 * 12 2 1 36 36 H 1.08995 * 109.59002 * 185.56891 * 13 12 2 37 37 H 1.09009 * 109.59131 * 65.13864 * 13 12 2 38 38 H 1.08000 * 120.43886 * 0.07956 * 18 17 15 39 39 H 1.07994 * 120.72920 * 180.24737 * 19 18 17 40 40 H 1.09008 * 109.69145 * 166.22729 * 24 23 21 41 41 H 1.08998 * 109.69665 * 286.80300 * 24 23 21 42 42 H 1.08994 * 109.71395 * 59.78807 * 25 24 23 43 43 H 1.09005 * 109.71463 * 180.38327 * 25 24 23 44 44 H 1.08994 * 109.58972 * 186.60320 * 27 14 13 45 45 H 1.09003 * 109.58303 * 66.17482 * 27 14 13 46 46 H 1.09004 * 109.49408 * 298.57308 * 28 2 1 47 47 H 1.08997 * 109.50341 * 58.63605 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6871 2.2244 1.0271 5 1 1.0660 1.8710 1.8369 6 6 2.1498 3.5331 1.0274 7 7 2.9071 3.9635 0.0407 8 14 1.6978 4.6833 2.4281 9 1 2.3121 6.0148 2.1933 10 1 0.2211 4.8250 2.4953 11 1 2.2003 4.1248 3.7091 12 6 2.0400 -0.7209 1.2499 13 6 3.5712 -0.6889 1.2644 14 7 4.0677 -1.2491 0.0002 15 6 4.9618 -2.2576 0.0002 16 8 5.2565 -2.8087 -1.0424 17 6 5.5843 -2.6938 1.2688 18 6 6.3471 -3.8589 1.2960 19 6 6.9286 -4.2563 2.4890 20 6 6.7186 -3.4788 3.6210 21 6 5.9395 -2.3230 3.5250 22 7 5.4047 -1.9726 2.3703 23 8 5.7252 -1.5437 4.6188 24 6 5.9866 -2.1388 5.8941 25 6 7.3435 -2.8523 5.8247 26 8 7.2711 -3.8535 4.8033 27 6 3.5714 -0.6888 -1.2642 28 6 2.0399 -0.7207 -1.2501 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 2.5756 1.6988 -0.7275 33 1 3.1421 3.3662 -0.6864 34 1 1.6575 -0.2209 2.1398 35 1 1.6978 -1.7557 1.2381 36 1 3.9413 -1.2848 2.0986 37 1 3.9143 0.3407 1.3675 38 1 6.4868 -4.4426 0.3982 39 1 7.5284 -5.1530 2.5388 40 1 6.0173 -1.3649 6.6612 41 1 5.2040 -2.8599 6.1303 42 1 8.1249 -2.1330 5.5798 43 1 7.5623 -3.3203 6.7845 44 1 3.9417 -1.2847 -2.0983 45 1 3.9145 0.3407 -1.3672 46 1 1.6977 -1.7556 -1.2384 47 1 1.6570 -0.2211 -2.1399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733865182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:30 Heat of formation + Delta-G solvation = -46.770462 kcal Electronic energy + Delta-G solvation = -31970.105480 eV Core-core repulsion = 27733.397486 eV Total energy + Delta-G solvation = -4236.707994 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.76122 -41.50205 -39.86769 -38.99032 -38.52709 -36.27688 -34.49886 -33.52724 -32.65199 -31.95666 -30.61045 -30.04769 -29.10237 -26.52728 -25.81364 -25.51087 -24.36119 -24.03662 -22.76702 -21.54055 -20.34570 -19.59101 -19.17090 -18.96200 -18.70565 -17.89668 -17.12183 -17.09083 -16.80904 -16.22113 -16.14878 -15.88958 -15.60584 -15.54920 -15.40224 -15.23460 -15.12489 -14.78369 -14.58626 -14.42660 -14.12713 -13.92384 -13.44143 -13.26613 -12.85273 -12.76346 -12.69421 -12.63480 -12.49891 -12.22566 -12.18015 -12.12668 -11.89411 -11.75607 -11.48595 -11.46209 -10.95465 -10.89178 -10.61790 -9.95364 -9.76427 -9.42039 -8.97031 -8.25582 -5.17904 -0.58309 -0.03402 1.37651 1.58345 1.61629 1.68414 1.83601 1.86696 1.98633 2.55305 2.76434 2.86254 3.15590 3.44626 3.51505 3.63921 3.71073 3.87578 3.88500 3.91593 3.99648 4.03080 4.10625 4.14459 4.32263 4.42436 4.51625 4.53633 4.57309 4.57679 4.63463 4.77954 4.81477 4.87524 4.94850 4.99635 5.07007 5.10136 5.15266 5.27711 5.39190 5.49158 5.53611 5.64972 5.74787 5.98311 6.33109 6.55428 6.61128 6.97548 7.21402 8.12306 8.24988 9.26235 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010505 B = 0.003859 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.744889 B = 7254.261756 C = 9062.547221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.191 3.809 3 N -0.735 5.735 4 C -0.298 4.298 5 H 0.065 0.935 6 C -0.109 4.109 7 N -0.983 5.983 8 Si 1.119 2.881 9 H -0.299 1.299 10 H -0.280 1.280 11 H -0.282 1.282 12 C -0.127 4.127 13 C 0.099 3.901 14 N -0.581 5.581 15 C 0.567 3.433 16 O -0.565 6.565 17 C 0.062 3.938 18 C -0.095 4.095 19 C -0.069 4.069 20 C 0.041 3.959 21 C 0.243 3.757 22 N -0.459 5.459 23 O -0.318 6.318 24 C 0.014 3.986 25 C 0.015 3.985 26 O -0.300 6.300 27 C 0.116 3.884 28 C -0.119 4.119 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.357 0.643 33 H 0.241 0.759 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.145 0.855 37 H 0.035 0.965 38 H 0.174 0.826 39 H 0.193 0.807 40 H 0.159 0.841 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.170 0.830 44 H 0.094 0.906 45 H 0.049 0.951 46 H 0.085 0.915 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.103 -21.178 12.374 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.101 3.899 3 N -0.377 5.377 4 C -0.430 4.430 5 H 0.083 0.917 6 C -0.300 4.300 7 N -0.632 5.632 8 Si 0.945 3.055 9 H -0.225 1.225 10 H -0.206 1.206 11 H -0.208 1.208 12 C -0.167 4.167 13 C -0.023 4.023 14 N -0.310 5.310 15 C 0.355 3.645 16 O -0.445 6.445 17 C -0.073 4.073 18 C -0.116 4.116 19 C -0.094 4.094 20 C -0.009 4.009 21 C 0.061 3.939 22 N -0.183 5.183 23 O -0.228 6.228 24 C -0.060 4.060 25 C -0.060 4.060 26 O -0.212 6.212 27 C -0.007 4.007 28 C -0.157 4.157 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.189 0.811 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.161 0.839 37 H 0.053 0.947 38 H 0.191 0.809 39 H 0.210 0.790 40 H 0.176 0.824 41 H 0.109 0.891 42 H 0.103 0.897 43 H 0.187 0.813 44 H 0.112 0.888 45 H 0.067 0.933 46 H 0.104 0.896 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.799 -19.234 12.691 24.328 hybrid contribution 0.254 -1.151 -0.803 1.426 sum 8.052 -20.385 11.889 24.935 Atomic orbital electron populations 1.22098 0.96416 1.00650 1.00829 1.19821 0.92822 0.83841 0.93400 1.42657 1.61115 1.08250 1.25706 1.20146 1.27043 0.94399 1.01428 0.91699 1.26855 0.99763 0.98231 1.05105 1.70982 1.41798 1.38032 1.12433 0.82721 0.75871 0.74144 0.72716 1.22508 1.20626 1.20846 1.22231 0.95497 0.99427 0.99522 1.22700 0.93872 0.99264 0.86477 1.48032 1.41025 1.33339 1.08618 1.18047 0.79184 0.79614 0.87609 1.90719 1.64489 1.56600 1.32723 1.20704 1.01070 0.94991 0.90552 1.22049 0.94620 0.94779 1.00126 1.21272 0.99353 1.01299 0.87492 1.20031 0.96183 0.95445 0.89203 1.19784 0.94945 0.90933 0.88287 1.66733 1.20438 1.32821 0.98301 1.86285 1.84020 1.38887 1.13611 1.24220 0.97957 1.01767 0.82084 1.24125 0.97189 0.91931 0.92714 1.86265 1.76198 1.38902 1.19855 1.21561 0.95000 0.97915 0.86202 1.22017 0.94034 1.01414 0.98282 0.93935 0.91353 0.94276 0.81066 0.94881 0.92499 0.91482 0.83881 0.94661 0.80904 0.78979 0.82383 0.89062 0.89651 0.81273 0.88788 0.93267 0.89601 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 8.44 71.98 0.61 -4.53 16 2 C 0.19 7.51 0.74 3.63 0.00 7.52 16 3 N -0.73 -36.28 4.13 -303.21 -1.25 -37.53 16 4 C -0.30 -16.42 8.68 84.03 0.73 -15.69 16 5 H 0.07 3.51 6.70 -2.91 -0.02 3.49 16 6 C -0.11 -6.37 5.50 84.86 0.47 -5.90 16 7 N -0.98 -62.58 13.70 21.65 0.30 -62.28 16 8 Si 1.12 53.31 29.92 68.60 2.05 55.36 16 9 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 C -0.13 -4.80 4.70 30.66 0.14 -4.66 16 13 C 0.10 3.93 5.61 86.35 0.48 4.41 16 14 N -0.58 -21.77 2.97 -822.32 -2.44 -24.21 16 15 C 0.57 20.26 7.64 86.80 0.66 20.92 16 16 O -0.56 -21.32 15.78 -3.88 -0.06 -21.38 16 17 C 0.06 1.91 6.57 41.79 0.27 2.19 16 18 C -0.09 -2.11 9.62 22.59 0.22 -1.89 16 19 C -0.07 -1.19 10.08 22.50 0.23 -0.97 16 20 C 0.04 0.84 6.51 22.79 0.15 0.98 16 21 C 0.24 6.55 7.55 85.03 0.64 7.19 16 22 N -0.46 -14.84 6.13 -297.43 -1.82 -16.66 16 23 O -0.32 -8.04 10.51 -81.44 -0.86 -8.90 16 24 C 0.01 0.18 7.24 72.14 0.52 0.70 16 25 C 0.01 0.13 7.26 72.14 0.52 0.66 16 26 O -0.30 -4.63 10.42 -79.02 -0.82 -5.45 16 27 C 0.12 4.24 6.17 86.36 0.53 4.77 16 28 C -0.12 -4.05 4.96 30.67 0.15 -3.90 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.04 1.54 7.27 -2.39 -0.02 1.52 16 32 H 0.36 18.85 5.29 -92.71 -0.49 18.36 16 33 H 0.24 15.36 6.77 -92.71 -0.63 14.73 16 34 H 0.06 2.32 7.32 -2.38 -0.02 2.31 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 36 H 0.15 5.45 4.02 -67.32 -0.27 5.18 16 37 H 0.03 1.72 7.74 -2.38 -0.02 1.70 16 38 H 0.17 3.30 7.66 -2.91 -0.02 3.28 16 39 H 0.19 1.81 8.06 -2.91 -0.02 1.79 16 40 H 0.16 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.17 0.12 8.14 -2.38 -0.02 0.10 16 44 H 0.09 3.25 7.00 -2.39 -0.02 3.24 16 45 H 0.05 2.03 6.94 -2.39 -0.02 2.01 16 46 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -77.38 370.20 1.83 -75.54 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: 0.40 Total: 33.72 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 6.34 Total: 11.80 kcal Atomic # 7 Polarization: -135.46 SS G_CDS: -5.22 Total: -140.69 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -1.74 Total: -35.73 kcal Atomic # 14 Polarization: 53.31 SS G_CDS: 2.05 Total: 55.36 kcal Total: -77.38 1.83 -75.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733865182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.772 kcal (2) G-P(sol) polarization free energy of solvation -77.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds