Wall clock time and date at job start Wed Apr 1 2020 05:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34511 * 125.79003 * 2 1 4 4 C 1.41383 * 106.84008 * 179.79171 * 3 2 1 5 5 C 1.34515 * 106.84174 * 0.37770 * 4 3 2 6 6 C 1.50695 * 125.79299 * 179.89096 * 5 4 3 7 7 C 1.50696 * 109.47695 * 89.70904 * 6 5 4 8 8 O 1.21286 * 119.99596 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00608 * 179.97438 * 7 6 5 10 10 C 1.49755 * 127.87726 * 359.24229 * 9 7 6 11 11 C 1.56019 * 105.32662 * 182.06172 * 10 9 7 12 12 H 1.08993 * 116.90977 * 159.54648 * 11 10 9 13 13 C 1.57089 * 99.59791 * 33.12543 * 11 10 9 14 14 C 1.49278 * 126.92919 * 180.02562 * 9 7 6 15 15 H 1.09000 * 116.12641 * 15.99991 * 14 9 7 16 16 C 1.56018 * 104.12727 * 246.89130 * 14 9 7 17 17 N 1.48283 * 105.07179 * 287.95616 * 16 14 9 18 18 C 1.46896 * 111.00349 * 122.54091 * 17 16 14 19 19 C 1.50702 * 109.46713 * 76.51541 * 18 17 16 20 20 O 1.21288 * 120.00244 * 0.02562 * 19 18 17 21 21 N 1.34785 * 119.99801 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99645 * 180.02562 * 21 19 18 23 23 H 1.08000 * 120.00692 * 359.97438 * 22 21 19 24 24 C 1.38956 * 119.99837 * 179.97438 * 22 21 19 25 25 N 1.31418 * 119.99623 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00135 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47141 * 180.02562 * 26 24 22 28 28 H 1.48503 * 109.47106 * 59.99890 * 26 24 22 29 29 H 1.48500 * 109.46889 * 299.99827 * 26 24 22 30 30 O 1.34303 * 125.78851 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47289 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46703 * 299.99784 * 1 2 3 33 33 H 1.09003 * 109.47126 * 59.99630 * 1 2 3 34 34 H 1.07994 * 126.58199 * 0.04638 * 3 2 1 35 35 H 1.08004 * 126.58217 * 180.23306 * 4 3 2 36 36 H 1.09002 * 109.46748 * 329.71107 * 6 5 4 37 37 H 1.08998 * 109.47599 * 209.71363 * 6 5 4 38 38 H 1.08997 * 109.93846 * 63.22265 * 10 9 7 39 39 H 1.08994 * 110.56355 * 301.22602 * 10 9 7 40 40 H 1.08997 * 112.35625 * 191.74564 * 13 11 10 41 41 H 1.08998 * 112.43447 * 64.35351 * 13 11 10 42 42 H 1.09006 * 110.32090 * 169.05523 * 16 14 9 43 43 H 1.09002 * 110.32018 * 46.85772 * 16 14 9 44 44 H 1.09006 * 109.47122 * 316.51773 * 18 17 16 45 45 H 1.08997 * 109.47300 * 196.51545 * 18 17 16 46 46 H 0.96998 * 120.00211 * 0.02562 * 21 19 18 47 47 H 0.96996 * 119.99906 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 0.0049 5 6 3.5814 -0.7122 -0.0009 6 6 4.7705 -1.6379 -0.0009 7 6 5.1669 -1.9469 1.4198 8 8 4.5447 -1.4632 2.3417 9 7 6.2121 -2.7613 1.6660 10 6 7.0860 -3.4619 0.6719 11 6 8.0882 -4.3014 1.5233 12 1 8.5800 -5.1366 1.0248 13 6 7.1624 -4.6581 2.7413 14 6 6.7354 -3.1697 3.0030 15 1 6.0731 -2.9962 3.8512 16 6 8.1438 -2.5029 3.0807 17 7 8.9894 -3.2772 2.1404 18 6 9.5726 -2.4025 1.1144 19 6 10.7187 -1.6255 1.7091 20 8 11.0203 -1.7851 2.8730 21 7 11.4086 -0.7533 0.9476 22 6 12.4516 -0.0468 1.4886 23 1 12.7202 -0.1888 2.5250 24 6 13.1632 0.8521 0.7034 25 7 12.8367 1.0245 -0.5578 26 14 14.5848 1.8141 1.4403 27 1 15.1739 2.6990 0.4033 28 1 15.6198 0.8695 1.9318 29 1 14.0904 2.6393 2.5716 30 8 2.2924 -1.0894 -0.0005 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.9666 2.1203 0.0007 35 1 4.5213 1.2432 0.0098 36 1 5.6039 -1.1587 -0.5146 37 1 4.5107 -2.5633 -0.5150 38 1 7.6227 -2.7302 0.0681 39 1 6.4917 -4.1155 0.0335 40 1 7.7205 -5.0824 3.5759 41 1 6.3196 -5.2863 2.4532 42 1 8.5409 -2.5739 4.0934 43 1 8.0867 -1.4603 2.7679 44 1 8.8127 -1.7096 0.7529 45 1 9.9362 -3.0083 0.2844 46 1 11.1672 -0.6254 0.0169 47 1 12.0988 0.5247 -0.9404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753419644.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:39 Heat of formation + Delta-G solvation = -4.750058 kcal Electronic energy + Delta-G solvation = -30587.479218 eV Core-core repulsion = 26352.593365 eV Total energy + Delta-G solvation = -4234.885853 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.75127 -41.27598 -38.88460 -37.98480 -34.47356 -33.77493 -33.33936 -33.20195 -31.51534 -30.93081 -29.94780 -29.82759 -26.55808 -25.69556 -24.81102 -23.95696 -22.06196 -21.63508 -20.71473 -20.31897 -19.82567 -18.72763 -17.90807 -17.60946 -16.98717 -16.75916 -16.29963 -16.06299 -15.60226 -15.35765 -14.78583 -14.48260 -14.33407 -14.27555 -13.74747 -13.63874 -13.51014 -13.32214 -13.08021 -12.95088 -12.87325 -12.83218 -12.55467 -12.36656 -12.26468 -12.08985 -11.90640 -11.69927 -11.44536 -11.32006 -11.20017 -11.07914 -10.88351 -10.20955 -10.14914 -9.96828 -9.86491 -9.54149 -8.98156 -8.53662 -8.43397 -8.04839 -8.00866 -6.75579 -3.88652 1.48669 2.35138 2.41386 2.60680 2.82898 3.30851 3.34720 3.54693 3.69228 3.83280 4.03357 4.20500 4.27903 4.33450 4.47958 4.56870 4.65305 4.79826 4.82397 4.87305 4.88507 5.00096 5.06717 5.13822 5.14355 5.18902 5.25975 5.33425 5.39542 5.50661 5.53045 5.61817 5.64843 5.65323 5.68074 5.82503 5.84489 5.91641 5.98088 6.03340 6.21293 6.39250 6.83942 6.98589 7.00554 7.27728 7.80150 7.93067 8.07723 8.59848 8.80442 9.47154 9.88358 10.67889 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011125 B = 0.002616 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.179609 B =10701.750248 C =12529.926057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.014 4.014 3 C -0.210 4.210 4 C -0.188 4.188 5 C 0.001 3.999 6 C -0.055 4.055 7 C 0.535 3.465 8 O -0.529 6.529 9 N -0.624 5.624 10 C 0.059 3.941 11 C 0.053 3.947 12 H 0.138 0.862 13 C -0.131 4.131 14 C 0.107 3.893 15 H 0.125 0.875 16 C 0.042 3.958 17 N -0.488 5.488 18 C 0.035 3.965 19 C 0.447 3.553 20 O -0.568 6.568 21 N -0.578 5.578 22 C -0.380 4.380 23 H 0.098 0.902 24 C -0.010 4.010 25 N -0.902 5.902 26 Si 1.090 2.910 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.284 1.284 30 O -0.172 6.172 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.123 0.877 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.089 0.911 46 H 0.374 0.626 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.224 -8.656 -3.470 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.064 4.064 3 C -0.229 4.229 4 C -0.207 4.207 5 C -0.050 4.050 6 C -0.094 4.094 7 C 0.323 3.677 8 O -0.405 6.405 9 N -0.360 5.360 10 C -0.065 4.065 11 C -0.056 4.056 12 H 0.156 0.844 13 C -0.170 4.170 14 C 0.004 3.996 15 H 0.143 0.857 16 C -0.086 4.086 17 N -0.211 5.211 18 C -0.097 4.097 19 C 0.232 3.768 20 O -0.450 6.450 21 N -0.217 5.217 22 C -0.509 4.509 23 H 0.116 0.884 24 C -0.212 4.212 25 N -0.542 5.542 26 Si 0.916 3.084 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.210 1.210 30 O -0.069 6.069 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.165 0.835 35 H 0.165 0.835 36 H 0.141 0.859 37 H 0.128 0.872 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.107 0.893 46 H 0.207 0.793 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.893 -7.788 -2.271 21.484 hybrid contribution -1.820 -0.394 -0.847 2.045 sum -21.713 -8.182 -3.118 23.412 Atomic orbital electron populations 1.20292 0.85141 1.03902 1.03509 1.22394 0.93915 0.84121 1.06002 1.21526 0.92612 0.99432 1.09367 1.21549 0.98417 0.93685 1.07075 1.21355 0.82520 0.93822 1.07255 1.20034 0.93734 1.00028 0.95648 1.19991 0.78717 0.78041 0.90963 1.90755 1.52288 1.51184 1.46267 1.49687 1.30618 1.47028 1.08685 1.23720 0.93322 0.96947 0.92510 1.24782 0.90910 0.95317 0.94541 0.84449 1.23917 0.98836 0.95360 0.98842 1.24144 0.94786 0.94262 0.86424 0.85732 1.23637 0.89395 0.96427 0.99177 1.64620 1.29060 1.12870 1.14561 1.22143 0.96858 0.95913 0.94783 1.19637 0.85847 0.83728 0.87607 1.90530 1.69683 1.67855 1.16946 1.41929 1.30409 1.37536 1.11831 1.20512 1.09423 1.21335 0.99655 0.88377 1.26493 1.02529 0.97256 0.94937 1.70911 1.28968 1.41542 1.12739 0.83143 0.74291 0.75894 0.75037 1.20419 1.20978 1.21045 1.83906 1.16162 1.35171 1.71625 0.90702 0.89682 0.89730 0.83459 0.83468 0.85949 0.87241 0.89984 0.90551 0.88228 0.89909 0.88753 0.92122 0.93053 0.89305 0.79317 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.42 36.01 0.38 -0.12 16 2 C -0.01 -0.16 7.32 -35.62 -0.26 -0.42 16 3 C -0.21 -2.44 10.81 -39.70 -0.43 -2.87 16 4 C -0.19 -2.40 10.81 -39.70 -0.43 -2.83 16 5 C 0.00 0.01 5.81 -35.63 -0.21 -0.20 16 6 C -0.05 -0.57 5.60 -29.04 -0.16 -0.73 16 7 C 0.53 7.22 7.90 -10.99 -0.09 7.13 16 8 O -0.53 -9.36 16.38 5.55 0.09 -9.27 16 9 N -0.62 -7.39 3.01 -155.28 -0.47 -7.85 16 10 C 0.06 0.54 5.79 -0.61 0.00 0.54 16 11 C 0.05 0.54 5.22 -62.29 -0.32 0.21 16 12 H 0.14 1.10 8.14 -51.93 -0.42 0.68 16 13 C -0.13 -1.25 6.81 -22.32 -0.15 -1.40 16 14 C 0.11 1.31 5.18 -62.58 -0.32 0.98 16 15 H 0.12 1.55 8.05 -51.93 -0.42 1.13 16 16 C 0.04 0.65 5.43 -1.45 -0.01 0.64 16 17 N -0.49 -7.32 4.84 -218.15 -1.06 -8.38 16 18 C 0.03 0.57 4.13 -4.98 -0.02 0.55 16 19 C 0.45 10.34 7.63 -10.98 -0.08 10.26 16 20 O -0.57 -15.37 15.47 5.55 0.09 -15.29 16 21 N -0.58 -14.35 5.28 -10.96 -0.06 -14.41 16 22 C -0.38 -10.64 9.68 -14.93 -0.14 -10.79 16 23 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 24 C -0.01 -0.27 5.50 -17.46 -0.10 -0.37 16 25 N -0.90 -25.14 13.68 55.50 0.76 -24.38 16 26 Si 1.09 24.33 29.92 -169.99 -5.09 19.24 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 29 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 30 O -0.17 -2.27 10.65 5.71 0.06 -2.21 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.15 1.72 8.06 -52.48 -0.42 1.30 16 36 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.78 5.54 -51.93 -0.29 0.49 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 43 H 0.06 1.08 7.41 -51.93 -0.39 0.69 16 44 H 0.05 0.78 6.11 -51.93 -0.32 0.46 16 45 H 0.09 1.25 8.03 -51.93 -0.42 0.83 16 46 H 0.37 8.51 6.73 -40.82 -0.27 8.24 16 47 H 0.26 6.93 6.77 -40.82 -0.28 6.65 16 LS Contribution 387.94 15.07 5.85 5.85 Total: -1.00 -37.40 387.94 -8.80 -46.21 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -6.62 Total: 9.90 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -2.36 Total: 0.58 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.82 Total: -55.02 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: 0.24 Total: -26.77 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -5.09 Total: 19.24 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.40 -8.80 -46.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753419644.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.457 kcal (2) G-P(sol) polarization free energy of solvation -37.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds