Wall clock time and date at job start Wed Apr 1 2020 05:18:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.34511 * 125.79003 * 2 1
4 4 C 1.41383 * 106.84008 * 179.79171 * 3 2 1
5 5 C 1.34515 * 106.84174 * 0.37770 * 4 3 2
6 6 C 1.50695 * 125.79299 * 179.89096 * 5 4 3
7 7 C 1.50696 * 109.47695 * 89.70904 * 6 5 4
8 8 O 1.21286 * 119.99596 * 0.02562 * 7 6 5
9 9 N 1.34774 * 120.00608 * 179.97438 * 7 6 5
10 10 C 1.49755 * 127.87726 * 359.24229 * 9 7 6
11 11 C 1.56019 * 105.32662 * 182.06172 * 10 9 7
12 12 H 1.08993 * 116.90977 * 159.54648 * 11 10 9
13 13 C 1.57089 * 99.59791 * 33.12543 * 11 10 9
14 14 C 1.49278 * 126.92919 * 180.02562 * 9 7 6
15 15 H 1.09000 * 116.12641 * 15.99991 * 14 9 7
16 16 C 1.56018 * 104.12727 * 246.89130 * 14 9 7
17 17 N 1.48283 * 105.07179 * 287.95616 * 16 14 9
18 18 C 1.46896 * 111.00349 * 122.54091 * 17 16 14
19 19 C 1.50702 * 109.46713 * 76.51541 * 18 17 16
20 20 O 1.21288 * 120.00244 * 0.02562 * 19 18 17
21 21 N 1.34785 * 119.99801 * 180.02562 * 19 18 17
22 22 C 1.37097 * 119.99645 * 180.02562 * 21 19 18
23 23 H 1.08000 * 120.00692 * 359.97438 * 22 21 19
24 24 C 1.38956 * 119.99837 * 179.97438 * 22 21 19
25 25 N 1.31418 * 119.99623 * 359.97438 * 24 22 21
26 26 Si 1.86798 * 120.00135 * 180.02562 * 24 22 21
27 27 H 1.48496 * 109.47141 * 180.02562 * 26 24 22
28 28 H 1.48503 * 109.47106 * 59.99890 * 26 24 22
29 29 H 1.48500 * 109.46889 * 299.99827 * 26 24 22
30 30 O 1.34303 * 125.78851 * 180.02562 * 2 1 3
31 31 H 1.08999 * 109.47289 * 179.97438 * 1 2 3
32 32 H 1.09001 * 109.46703 * 299.99784 * 1 2 3
33 33 H 1.09003 * 109.47126 * 59.99630 * 1 2 3
34 34 H 1.07994 * 126.58199 * 0.04638 * 3 2 1
35 35 H 1.08004 * 126.58217 * 180.23306 * 4 3 2
36 36 H 1.09002 * 109.46748 * 329.71107 * 6 5 4
37 37 H 1.08998 * 109.47599 * 209.71363 * 6 5 4
38 38 H 1.08997 * 109.93846 * 63.22265 * 10 9 7
39 39 H 1.08994 * 110.56355 * 301.22602 * 10 9 7
40 40 H 1.08997 * 112.35625 * 191.74564 * 13 11 10
41 41 H 1.08998 * 112.43447 * 64.35351 * 13 11 10
42 42 H 1.09006 * 110.32090 * 169.05523 * 16 14 9
43 43 H 1.09002 * 110.32018 * 46.85772 * 16 14 9
44 44 H 1.09006 * 109.47122 * 316.51773 * 18 17 16
45 45 H 1.08997 * 109.47300 * 196.51545 * 18 17 16
46 46 H 0.96998 * 120.00211 * 0.02562 * 21 19 18
47 47 H 0.96996 * 119.99906 * 0.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2937 1.0911 0.0000
4 6 3.6309 0.6320 0.0049
5 6 3.5814 -0.7122 -0.0009
6 6 4.7705 -1.6379 -0.0009
7 6 5.1669 -1.9469 1.4198
8 8 4.5447 -1.4632 2.3417
9 7 6.2121 -2.7613 1.6660
10 6 7.0860 -3.4619 0.6719
11 6 8.0882 -4.3014 1.5233
12 1 8.5800 -5.1366 1.0248
13 6 7.1624 -4.6581 2.7413
14 6 6.7354 -3.1697 3.0030
15 1 6.0731 -2.9962 3.8512
16 6 8.1438 -2.5029 3.0807
17 7 8.9894 -3.2772 2.1404
18 6 9.5726 -2.4025 1.1144
19 6 10.7187 -1.6255 1.7091
20 8 11.0203 -1.7851 2.8730
21 7 11.4086 -0.7533 0.9476
22 6 12.4516 -0.0468 1.4886
23 1 12.7202 -0.1888 2.5250
24 6 13.1632 0.8521 0.7034
25 7 12.8367 1.0245 -0.5578
26 14 14.5848 1.8141 1.4403
27 1 15.1739 2.6990 0.4033
28 1 15.6198 0.8695 1.9318
29 1 14.0904 2.6393 2.5716
30 8 2.2924 -1.0894 -0.0005
31 1 -0.3634 -1.0276 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 -0.3633 0.5139 -0.8900
34 1 1.9666 2.1203 0.0007
35 1 4.5213 1.2432 0.0098
36 1 5.6039 -1.1587 -0.5146
37 1 4.5107 -2.5633 -0.5150
38 1 7.6227 -2.7302 0.0681
39 1 6.4917 -4.1155 0.0335
40 1 7.7205 -5.0824 3.5759
41 1 6.3196 -5.2863 2.4532
42 1 8.5409 -2.5739 4.0934
43 1 8.0867 -1.4603 2.7679
44 1 8.8127 -1.7096 0.7529
45 1 9.9362 -3.0083 0.2844
46 1 11.1672 -0.6254 0.0169
47 1 12.0988 0.5247 -0.9404
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001753419644.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:18:39
Heat of formation + Delta-G solvation = -4.750058 kcal
Electronic energy + Delta-G solvation = -30587.479218 eV
Core-core repulsion = 26352.593365 eV
Total energy + Delta-G solvation = -4234.885853 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-42.75127 -41.27598 -38.88460 -37.98480 -34.47356 -33.77493 -33.33936 -33.20195
-31.51534 -30.93081 -29.94780 -29.82759 -26.55808 -25.69556 -24.81102 -23.95696
-22.06196 -21.63508 -20.71473 -20.31897 -19.82567 -18.72763 -17.90807 -17.60946
-16.98717 -16.75916 -16.29963 -16.06299 -15.60226 -15.35765 -14.78583 -14.48260
-14.33407 -14.27555 -13.74747 -13.63874 -13.51014 -13.32214 -13.08021 -12.95088
-12.87325 -12.83218 -12.55467 -12.36656 -12.26468 -12.08985 -11.90640 -11.69927
-11.44536 -11.32006 -11.20017 -11.07914 -10.88351 -10.20955 -10.14914 -9.96828
-9.86491 -9.54149 -8.98156 -8.53662 -8.43397 -8.04839 -8.00866 -6.75579
-3.88652 1.48669 2.35138 2.41386 2.60680 2.82898 3.30851 3.34720
3.54693 3.69228 3.83280 4.03357 4.20500 4.27903 4.33450 4.47958
4.56870 4.65305 4.79826 4.82397 4.87305 4.88507 5.00096 5.06717
5.13822 5.14355 5.18902 5.25975 5.33425 5.39542 5.50661 5.53045
5.61817 5.64843 5.65323 5.68074 5.82503 5.84489 5.91641 5.98088
6.03340 6.21293 6.39250 6.83942 6.98589 7.00554 7.27728 7.80150
7.93067 8.07723 8.59848 8.80442 9.47154 9.88358 10.67889
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.011125 B = 0.002616 C = 0.002234
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2516.179609 B =10701.750248 C =12529.926057
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 C -0.014 4.014
3 C -0.210 4.210
4 C -0.188 4.188
5 C 0.001 3.999
6 C -0.055 4.055
7 C 0.535 3.465
8 O -0.529 6.529
9 N -0.624 5.624
10 C 0.059 3.941
11 C 0.053 3.947
12 H 0.138 0.862
13 C -0.131 4.131
14 C 0.107 3.893
15 H 0.125 0.875
16 C 0.042 3.958
17 N -0.488 5.488
18 C 0.035 3.965
19 C 0.447 3.553
20 O -0.568 6.568
21 N -0.578 5.578
22 C -0.380 4.380
23 H 0.098 0.902
24 C -0.010 4.010
25 N -0.902 5.902
26 Si 1.090 2.910
27 H -0.279 1.279
28 H -0.284 1.284
29 H -0.284 1.284
30 O -0.172 6.172
31 H 0.074 0.926
32 H 0.085 0.915
33 H 0.084 0.916
34 H 0.148 0.852
35 H 0.148 0.852
36 H 0.123 0.877
37 H 0.109 0.891
38 H 0.082 0.918
39 H 0.076 0.924
40 H 0.099 0.901
41 H 0.082 0.918
42 H 0.094 0.906
43 H 0.060 0.940
44 H 0.052 0.948
45 H 0.089 0.911
46 H 0.374 0.626
47 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.224 -8.656 -3.470 23.183
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.064 4.064
3 C -0.229 4.229
4 C -0.207 4.207
5 C -0.050 4.050
6 C -0.094 4.094
7 C 0.323 3.677
8 O -0.405 6.405
9 N -0.360 5.360
10 C -0.065 4.065
11 C -0.056 4.056
12 H 0.156 0.844
13 C -0.170 4.170
14 C 0.004 3.996
15 H 0.143 0.857
16 C -0.086 4.086
17 N -0.211 5.211
18 C -0.097 4.097
19 C 0.232 3.768
20 O -0.450 6.450
21 N -0.217 5.217
22 C -0.509 4.509
23 H 0.116 0.884
24 C -0.212 4.212
25 N -0.542 5.542
26 Si 0.916 3.084
27 H -0.204 1.204
28 H -0.210 1.210
29 H -0.210 1.210
30 O -0.069 6.069
31 H 0.093 0.907
32 H 0.103 0.897
33 H 0.103 0.897
34 H 0.165 0.835
35 H 0.165 0.835
36 H 0.141 0.859
37 H 0.128 0.872
38 H 0.100 0.900
39 H 0.094 0.906
40 H 0.118 0.882
41 H 0.101 0.899
42 H 0.112 0.888
43 H 0.079 0.921
44 H 0.069 0.931
45 H 0.107 0.893
46 H 0.207 0.793
47 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -19.893 -7.788 -2.271 21.484
hybrid contribution -1.820 -0.394 -0.847 2.045
sum -21.713 -8.182 -3.118 23.412
Atomic orbital electron populations
1.20292 0.85141 1.03902 1.03509 1.22394 0.93915 0.84121 1.06002
1.21526 0.92612 0.99432 1.09367 1.21549 0.98417 0.93685 1.07075
1.21355 0.82520 0.93822 1.07255 1.20034 0.93734 1.00028 0.95648
1.19991 0.78717 0.78041 0.90963 1.90755 1.52288 1.51184 1.46267
1.49687 1.30618 1.47028 1.08685 1.23720 0.93322 0.96947 0.92510
1.24782 0.90910 0.95317 0.94541 0.84449 1.23917 0.98836 0.95360
0.98842 1.24144 0.94786 0.94262 0.86424 0.85732 1.23637 0.89395
0.96427 0.99177 1.64620 1.29060 1.12870 1.14561 1.22143 0.96858
0.95913 0.94783 1.19637 0.85847 0.83728 0.87607 1.90530 1.69683
1.67855 1.16946 1.41929 1.30409 1.37536 1.11831 1.20512 1.09423
1.21335 0.99655 0.88377 1.26493 1.02529 0.97256 0.94937 1.70911
1.28968 1.41542 1.12739 0.83143 0.74291 0.75894 0.75037 1.20419
1.20978 1.21045 1.83906 1.16162 1.35171 1.71625 0.90702 0.89682
0.89730 0.83459 0.83468 0.85949 0.87241 0.89984 0.90551 0.88228
0.89909 0.88753 0.92122 0.93053 0.89305 0.79317 0.92857
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.49 10.42 36.01 0.38 -0.12 16
2 C -0.01 -0.16 7.32 -35.62 -0.26 -0.42 16
3 C -0.21 -2.44 10.81 -39.70 -0.43 -2.87 16
4 C -0.19 -2.40 10.81 -39.70 -0.43 -2.83 16
5 C 0.00 0.01 5.81 -35.63 -0.21 -0.20 16
6 C -0.05 -0.57 5.60 -29.04 -0.16 -0.73 16
7 C 0.53 7.22 7.90 -10.99 -0.09 7.13 16
8 O -0.53 -9.36 16.38 5.55 0.09 -9.27 16
9 N -0.62 -7.39 3.01 -155.28 -0.47 -7.85 16
10 C 0.06 0.54 5.79 -0.61 0.00 0.54 16
11 C 0.05 0.54 5.22 -62.29 -0.32 0.21 16
12 H 0.14 1.10 8.14 -51.93 -0.42 0.68 16
13 C -0.13 -1.25 6.81 -22.32 -0.15 -1.40 16
14 C 0.11 1.31 5.18 -62.58 -0.32 0.98 16
15 H 0.12 1.55 8.05 -51.93 -0.42 1.13 16
16 C 0.04 0.65 5.43 -1.45 -0.01 0.64 16
17 N -0.49 -7.32 4.84 -218.15 -1.06 -8.38 16
18 C 0.03 0.57 4.13 -4.98 -0.02 0.55 16
19 C 0.45 10.34 7.63 -10.98 -0.08 10.26 16
20 O -0.57 -15.37 15.47 5.55 0.09 -15.29 16
21 N -0.58 -14.35 5.28 -10.96 -0.06 -14.41 16
22 C -0.38 -10.64 9.68 -14.93 -0.14 -10.79 16
23 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16
24 C -0.01 -0.27 5.50 -17.46 -0.10 -0.37 16
25 N -0.90 -25.14 13.68 55.50 0.76 -24.38 16
26 Si 1.09 24.33 29.92 -169.99 -5.09 19.24 16
27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16
28 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16
29 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16
30 O -0.17 -2.27 10.65 5.71 0.06 -2.21 16
31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16
33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
34 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16
35 H 0.15 1.72 8.06 -52.48 -0.42 1.30 16
36 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16
37 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16
38 H 0.08 0.78 5.54 -51.93 -0.29 0.49 16
39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16
40 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16
41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
42 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16
43 H 0.06 1.08 7.41 -51.93 -0.39 0.69 16
44 H 0.05 0.78 6.11 -51.93 -0.32 0.46 16
45 H 0.09 1.25 8.03 -51.93 -0.42 0.83 16
46 H 0.37 8.51 6.73 -40.82 -0.27 8.24 16
47 H 0.26 6.93 6.77 -40.82 -0.28 6.65 16
LS Contribution 387.94 15.07 5.85 5.85
Total: -1.00 -37.40 387.94 -8.80 -46.21
By element:
Atomic # 1 Polarization: 16.53 SS G_CDS: -6.62 Total: 9.90 kcal
Atomic # 6 Polarization: 2.94 SS G_CDS: -2.36 Total: 0.58 kcal
Atomic # 7 Polarization: -54.19 SS G_CDS: -0.82 Total: -55.02 kcal
Atomic # 8 Polarization: -27.00 SS G_CDS: 0.24 Total: -26.77 kcal
Atomic # 14 Polarization: 24.33 SS G_CDS: -5.09 Total: 19.24 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -37.40 -8.80 -46.21 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001753419644.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.457 kcal
(2) G-P(sol) polarization free energy of solvation -37.404 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.053 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.207 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.750 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds