Wall clock time and date at job start Wed Apr 1 2020 05:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34511 * 125.79003 * 2 1 4 4 C 1.41383 * 106.84008 * 179.79171 * 3 2 1 5 5 C 1.34515 * 106.84174 * 0.37770 * 4 3 2 6 6 C 1.50695 * 125.79299 * 179.89096 * 5 4 3 7 7 C 1.50696 * 109.47695 * 89.70904 * 6 5 4 8 8 O 1.21286 * 119.99596 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00608 * 179.97438 * 7 6 5 10 10 C 1.49755 * 127.87726 * 359.24229 * 9 7 6 11 11 C 1.56019 * 105.32662 * 182.06172 * 10 9 7 12 12 H 1.08993 * 116.90977 * 159.54648 * 11 10 9 13 13 C 1.57089 * 99.59791 * 33.12543 * 11 10 9 14 14 C 1.49278 * 126.92919 * 180.02562 * 9 7 6 15 15 H 1.09000 * 116.12641 * 15.99991 * 14 9 7 16 16 C 1.56018 * 104.12727 * 246.89130 * 14 9 7 17 17 N 1.48283 * 105.07179 * 287.95616 * 16 14 9 18 18 C 1.46896 * 111.00349 * 122.54091 * 17 16 14 19 19 C 1.50702 * 109.46713 * 76.51541 * 18 17 16 20 20 O 1.21288 * 120.00244 * 0.02562 * 19 18 17 21 21 N 1.34785 * 119.99801 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99645 * 180.02562 * 21 19 18 23 23 H 1.08000 * 120.00692 * 359.97438 * 22 21 19 24 24 C 1.38956 * 119.99837 * 179.97438 * 22 21 19 25 25 N 1.31418 * 119.99623 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00135 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47141 * 180.02562 * 26 24 22 28 28 H 1.48503 * 109.47106 * 59.99890 * 26 24 22 29 29 H 1.48500 * 109.46889 * 299.99827 * 26 24 22 30 30 O 1.34303 * 125.78851 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47289 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46703 * 299.99784 * 1 2 3 33 33 H 1.09003 * 109.47126 * 59.99630 * 1 2 3 34 34 H 1.07994 * 126.58199 * 0.04638 * 3 2 1 35 35 H 1.08004 * 126.58217 * 180.23306 * 4 3 2 36 36 H 1.09002 * 109.46748 * 329.71107 * 6 5 4 37 37 H 1.08998 * 109.47599 * 209.71363 * 6 5 4 38 38 H 1.08997 * 109.93846 * 63.22265 * 10 9 7 39 39 H 1.08994 * 110.56355 * 301.22602 * 10 9 7 40 40 H 1.08997 * 112.35625 * 191.74564 * 13 11 10 41 41 H 1.08998 * 112.43447 * 64.35351 * 13 11 10 42 42 H 1.09006 * 110.32090 * 169.05523 * 16 14 9 43 43 H 1.09002 * 110.32018 * 46.85772 * 16 14 9 44 44 H 1.09006 * 109.47122 * 316.51773 * 18 17 16 45 45 H 1.08997 * 109.47300 * 196.51545 * 18 17 16 46 46 H 0.96998 * 120.00211 * 0.02562 * 21 19 18 47 47 H 0.96996 * 119.99906 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 0.0049 5 6 3.5814 -0.7122 -0.0009 6 6 4.7705 -1.6379 -0.0009 7 6 5.1669 -1.9469 1.4198 8 8 4.5447 -1.4632 2.3417 9 7 6.2121 -2.7613 1.6660 10 6 7.0860 -3.4619 0.6719 11 6 8.0882 -4.3014 1.5233 12 1 8.5800 -5.1366 1.0248 13 6 7.1624 -4.6581 2.7413 14 6 6.7354 -3.1697 3.0030 15 1 6.0731 -2.9962 3.8512 16 6 8.1438 -2.5029 3.0807 17 7 8.9894 -3.2772 2.1404 18 6 9.5726 -2.4025 1.1144 19 6 10.7187 -1.6255 1.7091 20 8 11.0203 -1.7851 2.8730 21 7 11.4086 -0.7533 0.9476 22 6 12.4516 -0.0468 1.4886 23 1 12.7202 -0.1888 2.5250 24 6 13.1632 0.8521 0.7034 25 7 12.8367 1.0245 -0.5578 26 14 14.5848 1.8141 1.4403 27 1 15.1739 2.6990 0.4033 28 1 15.6198 0.8695 1.9318 29 1 14.0904 2.6393 2.5716 30 8 2.2924 -1.0894 -0.0005 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.9666 2.1203 0.0007 35 1 4.5213 1.2432 0.0098 36 1 5.6039 -1.1587 -0.5146 37 1 4.5107 -2.5633 -0.5150 38 1 7.6227 -2.7302 0.0681 39 1 6.4917 -4.1155 0.0335 40 1 7.7205 -5.0824 3.5759 41 1 6.3196 -5.2863 2.4532 42 1 8.5409 -2.5739 4.0934 43 1 8.0867 -1.4603 2.7679 44 1 8.8127 -1.7096 0.7529 45 1 9.9362 -3.0083 0.2844 46 1 11.1672 -0.6254 0.0169 47 1 12.0988 0.5247 -0.9404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753419644.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:39 Heat of formation + Delta-G solvation = -32.293478 kcal Electronic energy + Delta-G solvation = -30588.673590 eV Core-core repulsion = 26352.593365 eV Total energy + Delta-G solvation = -4236.080225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.62825 -42.28657 -40.25161 -39.56746 -36.40020 -35.02333 -34.24795 -34.02974 -33.17551 -32.29360 -30.89563 -30.62425 -28.03647 -26.53371 -26.07164 -25.46978 -23.01579 -22.61744 -21.75593 -21.50237 -21.09901 -20.02790 -19.72773 -18.59081 -18.24730 -17.84591 -17.31652 -17.20722 -16.75698 -16.65892 -16.19119 -15.90237 -15.51694 -15.39493 -15.37372 -14.89700 -14.42960 -14.15813 -14.03904 -13.84349 -13.77737 -13.73832 -13.66923 -13.54753 -13.37876 -13.15646 -13.07447 -12.84286 -12.66348 -12.57585 -12.39726 -12.20002 -12.14954 -11.93397 -11.88475 -11.51765 -11.22884 -10.88567 -10.43454 -10.09675 -9.91179 -9.30947 -9.21210 -8.92215 -6.05802 0.60298 1.42023 1.47745 1.51853 1.53137 1.74611 1.80930 1.98428 2.02249 2.36479 2.61030 3.13372 3.16929 3.23168 3.42096 3.49656 3.59664 3.67804 3.89891 3.90879 4.03469 4.07347 4.10395 4.15291 4.24330 4.31316 4.38246 4.45486 4.51977 4.52461 4.64772 4.69050 4.75286 4.80213 4.84549 4.88044 4.91691 4.99501 5.00985 5.11376 5.22955 5.55743 5.58209 5.71196 5.87471 5.97980 6.12708 6.34591 6.59094 6.76782 6.94352 7.45534 7.96011 8.55884 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011125 B = 0.002616 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.179609 B =10701.750248 C =12529.926057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.020 4.020 3 C -0.230 4.230 4 C -0.211 4.211 5 C -0.017 4.017 6 C -0.047 4.047 7 C 0.529 3.471 8 O -0.584 6.584 9 N -0.622 5.622 10 C 0.058 3.942 11 C 0.060 3.940 12 H 0.172 0.828 13 C -0.115 4.115 14 C 0.105 3.895 15 H 0.115 0.885 16 C 0.046 3.954 17 N -0.510 5.510 18 C 0.052 3.948 19 C 0.442 3.558 20 O -0.613 6.613 21 N -0.589 5.589 22 C -0.408 4.408 23 H 0.069 0.931 24 C -0.042 4.042 25 N -0.917 5.917 26 Si 1.131 2.869 27 H -0.271 1.271 28 H -0.272 1.272 29 H -0.277 1.277 30 O -0.187 6.187 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.165 0.835 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.069 0.931 43 H 0.026 0.974 44 H 0.067 0.933 45 H 0.124 0.876 46 H 0.384 0.616 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.376 -10.481 -5.502 25.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.070 4.070 3 C -0.249 4.249 4 C -0.230 4.230 5 C -0.067 4.067 6 C -0.086 4.086 7 C 0.319 3.681 8 O -0.464 6.464 9 N -0.356 5.356 10 C -0.064 4.064 11 C -0.047 4.047 12 H 0.189 0.811 13 C -0.153 4.153 14 C 0.001 3.999 15 H 0.133 0.867 16 C -0.083 4.083 17 N -0.234 5.234 18 C -0.080 4.080 19 C 0.230 3.770 20 O -0.498 6.498 21 N -0.229 5.229 22 C -0.537 4.537 23 H 0.087 0.913 24 C -0.240 4.240 25 N -0.557 5.557 26 Si 0.951 3.049 27 H -0.196 1.196 28 H -0.197 1.197 29 H -0.202 1.202 30 O -0.085 6.085 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.125 0.875 34 H 0.183 0.817 35 H 0.166 0.834 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.102 0.898 39 H 0.138 0.862 40 H 0.117 0.883 41 H 0.129 0.871 42 H 0.087 0.913 43 H 0.044 0.956 44 H 0.085 0.915 45 H 0.142 0.858 46 H 0.218 0.782 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.051 -9.657 -4.350 23.565 hybrid contribution -1.508 0.142 -0.140 1.521 sum -22.559 -9.515 -4.491 24.892 Atomic orbital electron populations 1.20495 0.82190 1.04912 1.05120 1.23226 0.95658 0.83572 1.04568 1.21854 0.92376 1.00649 1.10012 1.21824 0.99193 0.94318 1.07709 1.21798 0.83109 0.94364 1.07408 1.20135 0.93445 1.01303 0.93738 1.20561 0.78440 0.77348 0.91732 1.90727 1.54308 1.53259 1.48058 1.49754 1.30225 1.46529 1.09119 1.23930 0.93314 0.97229 0.91964 1.25088 0.90124 0.94643 0.94878 0.81082 1.23890 0.99442 0.93241 0.98707 1.24063 0.92674 0.96214 0.86960 0.86733 1.23435 0.91683 0.95025 0.98139 1.64509 1.30793 1.13147 1.14968 1.21979 0.94470 0.96230 0.95278 1.20957 0.86381 0.82722 0.86984 1.90501 1.71142 1.68966 1.19146 1.41984 1.30379 1.38079 1.12497 1.20463 1.11343 1.23043 0.98857 0.91254 1.27743 1.04100 0.97462 0.94731 1.70973 1.29457 1.42086 1.13143 0.82664 0.72192 0.75245 0.74830 1.19602 1.19723 1.20220 1.83903 1.16561 1.36114 1.71902 0.89985 0.88494 0.87530 0.81729 0.83397 0.83944 0.84028 0.89775 0.86250 0.88289 0.87111 0.91286 0.95584 0.91479 0.85795 0.78172 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.42 71.24 0.74 -0.11 16 2 C -0.02 -0.44 7.32 24.83 0.18 -0.26 16 3 C -0.23 -5.29 10.81 22.19 0.24 -5.05 16 4 C -0.21 -5.45 10.81 22.19 0.24 -5.21 16 5 C -0.02 -0.42 5.81 24.83 0.14 -0.28 16 6 C -0.05 -0.88 5.60 29.10 0.16 -0.72 16 7 C 0.53 13.80 7.90 87.66 0.69 14.49 16 8 O -0.58 -21.15 16.38 -3.05 -0.05 -21.20 16 9 N -0.62 -13.52 3.01 -763.58 -2.30 -15.82 16 10 C 0.06 0.81 5.79 86.79 0.50 1.31 16 11 C 0.06 0.96 5.22 46.84 0.24 1.21 16 12 H 0.17 1.74 8.14 -2.39 -0.02 1.72 16 13 C -0.11 -1.84 6.81 33.45 0.23 -1.61 16 14 C 0.10 2.49 5.18 46.92 0.24 2.73 16 15 H 0.11 2.94 8.05 -2.39 -0.02 2.93 16 16 C 0.05 1.46 5.43 87.08 0.47 1.93 16 17 N -0.51 -14.57 4.84 -844.09 -4.09 -18.66 16 18 C 0.05 1.61 4.13 85.56 0.35 1.97 16 19 C 0.44 20.73 7.63 87.66 0.67 21.40 16 20 O -0.61 -34.36 15.47 -3.05 -0.05 -34.40 16 21 N -0.59 -29.70 5.28 -306.97 -1.62 -31.32 16 22 C -0.41 -23.43 9.68 84.04 0.81 -22.61 16 23 H 0.07 4.32 7.16 -2.91 -0.02 4.30 16 24 C -0.04 -2.30 5.50 84.93 0.47 -1.83 16 25 N -0.92 -50.97 13.68 21.67 0.30 -50.68 16 26 Si 1.13 49.03 29.92 68.60 2.05 51.08 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 29 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 30 O -0.19 -4.84 10.65 -2.50 -0.03 -4.87 16 31 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 35 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 36 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.22 5.54 -2.39 -0.01 1.20 16 39 H 0.12 0.80 8.14 -2.39 -0.02 0.79 16 40 H 0.10 1.65 8.14 -2.39 -0.02 1.64 16 41 H 0.11 1.25 8.14 -2.39 -0.02 1.24 16 42 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 43 H 0.03 0.97 7.41 -2.39 -0.02 0.95 16 44 H 0.07 1.92 6.11 -2.38 -0.01 1.90 16 45 H 0.12 3.03 8.03 -2.39 -0.02 3.01 16 46 H 0.38 17.53 6.73 -92.71 -0.62 16.90 16 47 H 0.26 13.84 6.77 -92.71 -0.63 13.21 16 Total: -1.00 -86.67 387.94 1.14 -85.54 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.52 Total: 32.96 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 6.40 Total: 7.36 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -7.71 Total: -116.47 kcal Atomic # 8 Polarization: -60.35 SS G_CDS: -0.12 Total: -60.47 kcal Atomic # 14 Polarization: 49.03 SS G_CDS: 2.05 Total: 51.08 kcal Total: -86.67 1.14 -85.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753419644.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.242 kcal (2) G-P(sol) polarization free energy of solvation -86.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds