Wall clock time and date at job start Wed Apr 1 2020 05:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35135 * 125.61769 * 2 1 4 4 C 1.40365 * 107.11128 * 179.97438 * 3 2 1 5 5 C 1.36542 * 106.71321 * 0.02562 * 4 3 2 6 6 C 1.46655 * 125.99035 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99810 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00110 * 179.72349 * 6 5 4 9 9 C 1.48313 * 128.20208 * 359.94770 * 8 6 5 10 10 C 1.53996 * 104.57800 * 221.86970 * 9 8 6 11 11 H 1.09004 * 112.89411 * 97.90392 * 10 9 8 12 12 C 1.55901 * 108.94971 * 224.42581 * 10 9 8 13 13 N 1.48731 * 104.36613 * 136.69339 * 12 10 9 14 14 C 1.46901 * 111.00090 * 198.76358 * 13 12 10 15 15 C 1.50707 * 109.46955 * 284.52674 * 14 13 12 16 16 O 1.21292 * 120.00069 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99716 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99593 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99874 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99919 * 180.02562 * 18 17 15 21 21 N 1.31409 * 119.99872 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99975 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47307 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46746 * 120.00229 * 22 20 18 25 25 H 1.48502 * 109.47197 * 240.00020 * 22 20 18 26 26 C 1.48730 * 103.49900 * 317.89745 * 13 12 10 27 27 C 1.54409 * 104.34761 * 41.79778 * 26 13 12 28 28 H 1.08999 * 112.56478 * 98.12697 * 27 26 13 29 29 C 1.48319 * 128.20007 * 180.27528 * 8 6 5 30 30 O 1.33936 * 125.61421 * 180.26981 * 2 1 3 31 31 H 1.09005 * 109.47226 * 89.99908 * 1 2 3 32 32 H 1.08995 * 109.47126 * 210.00043 * 1 2 3 33 33 H 1.09004 * 109.46843 * 329.99964 * 1 2 3 34 34 H 1.07992 * 126.44300 * 359.97438 * 3 2 1 35 35 H 1.08005 * 126.64223 * 179.97438 * 4 3 2 36 36 H 1.09002 * 110.45594 * 340.62785 * 9 8 6 37 37 H 1.09004 * 110.45329 * 103.18570 * 9 8 6 38 38 H 1.09007 * 110.70464 * 17.84509 * 12 10 9 39 39 H 1.08998 * 110.30349 * 255.34227 * 12 10 9 40 40 H 1.08996 * 109.47401 * 44.52735 * 14 13 12 41 41 H 1.08999 * 109.47484 * 164.52621 * 14 13 12 42 42 H 0.97001 * 120.00288 * 0.02562 * 17 15 14 43 43 H 0.96997 * 120.00197 * 179.97438 * 21 20 18 44 44 H 1.09005 * 110.45588 * 283.09031 * 26 13 12 45 45 H 1.08995 * 110.56667 * 160.57299 * 26 13 12 46 46 H 1.08997 * 110.45359 * 256.80987 * 29 8 6 47 47 H 1.08996 * 110.45726 * 19.24444 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6530 0.0006 5 6 3.5823 -0.7117 0.0004 6 6 4.7414 -1.6103 0.0003 7 8 5.8680 -1.1501 -0.0001 8 7 4.5589 -2.9456 0.0056 9 6 3.2799 -3.6965 0.0131 10 6 3.5114 -4.8464 1.0111 11 1 3.1134 -4.6333 2.0032 12 6 2.9540 -6.1675 0.3993 13 7 3.9973 -7.1834 0.7021 14 6 3.8546 -8.3596 -0.1664 15 6 2.6897 -9.1924 0.3034 16 8 2.0418 -8.8405 1.2665 17 7 2.3672 -10.3277 -0.3474 18 6 1.3078 -11.0857 0.0803 19 1 0.7315 -10.7727 0.9383 20 6 0.9756 -12.2564 -0.5903 21 7 1.6771 -12.6375 -1.6341 22 14 -0.4683 -13.2887 -0.0081 23 1 -1.0896 -12.6465 1.1780 24 1 -1.4728 -13.3934 -1.0968 25 1 0.0093 -14.6466 0.3570 26 6 5.2706 -6.4669 0.4238 27 6 5.0533 -5.0570 1.0148 28 1 5.4906 -4.9475 2.0072 29 6 5.5895 -4.0122 0.0121 30 8 2.2869 -1.0888 -0.0051 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.9614 2.1260 -0.0004 35 1 4.5114 1.2702 0.0004 36 1 2.4649 -3.0574 0.3528 37 1 3.0656 -4.0938 -0.9790 38 1 2.8209 -6.0674 -0.6779 39 1 2.0110 -6.4364 0.8754 40 1 3.6789 -8.0349 -1.1919 41 1 4.7668 -8.9547 -0.1249 42 1 2.8851 -10.6090 -1.1179 43 1 1.4455 -13.4549 -2.1020 44 1 5.4470 -6.4066 -0.6502 45 1 6.1052 -6.9631 0.9189 46 1 5.6885 -4.4523 -0.9801 47 1 6.5470 -3.6147 0.3488 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754841812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:30 Heat of formation + Delta-G solvation = -29.782518 kcal Electronic energy + Delta-G solvation = -30116.575163 eV Core-core repulsion = 25880.603821 eV Total energy + Delta-G solvation = -4235.971341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.04882 -40.59229 -38.97450 -37.94623 -35.80291 -33.89522 -33.65519 -32.43445 -31.68588 -31.14533 -30.69241 -28.19042 -26.98163 -25.94569 -24.92732 -23.72860 -22.19986 -21.61717 -21.40139 -20.12335 -19.79239 -19.06067 -17.89488 -17.79840 -16.90979 -16.64778 -16.06624 -15.88910 -15.64579 -15.39959 -14.79939 -14.76658 -14.47277 -14.18537 -13.74290 -13.65064 -13.57485 -13.51925 -13.38521 -13.19318 -12.92592 -12.86922 -12.42445 -12.31729 -12.15628 -11.94379 -11.64103 -11.48193 -11.31249 -11.09870 -10.96141 -10.89009 -10.69270 -10.46010 -10.37197 -10.34962 -10.22769 -9.50783 -9.19199 -8.77262 -8.55392 -8.05636 -7.95606 -6.42080 -3.82753 0.72341 1.97545 2.18940 2.69249 2.88688 3.15674 3.26255 3.33323 3.89662 3.94897 4.02149 4.19565 4.29177 4.36977 4.54258 4.56108 4.70062 4.88061 4.90508 5.00103 5.04277 5.06191 5.10110 5.19045 5.23888 5.26157 5.27914 5.41338 5.43308 5.51608 5.56273 5.57760 5.66235 5.71758 5.78355 5.81389 5.90138 6.02122 6.03381 6.15461 6.26133 6.30953 6.55701 7.00429 7.14228 7.15767 7.55035 7.71780 8.06229 8.61747 9.18240 9.54551 10.06495 10.75856 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016220 B = 0.002108 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.833228 B =13281.297823 C =14606.893500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.019 3.981 3 C -0.225 4.225 4 C -0.116 4.116 5 C -0.078 4.078 6 C 0.624 3.376 7 O -0.525 6.525 8 N -0.616 5.616 9 C 0.100 3.900 10 C -0.100 4.100 11 H 0.100 0.900 12 C 0.044 3.956 13 N -0.479 5.479 14 C 0.033 3.967 15 C 0.446 3.554 16 O -0.576 6.576 17 N -0.567 5.567 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.034 3.966 27 C -0.101 4.101 28 H 0.099 0.901 29 C 0.110 3.890 30 O -0.158 6.158 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.043 0.957 39 H 0.098 0.902 40 H 0.051 0.949 41 H 0.090 0.910 42 H 0.391 0.609 43 H 0.271 0.729 44 H 0.047 0.953 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.973 24.172 -0.303 24.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 C -0.244 4.244 4 C -0.136 4.136 5 C -0.129 4.129 6 C 0.413 3.587 7 O -0.404 6.404 8 N -0.348 5.348 9 C -0.022 4.022 10 C -0.120 4.120 11 H 0.119 0.881 12 C -0.085 4.085 13 N -0.203 5.203 14 C -0.099 4.099 15 C 0.231 3.769 16 O -0.460 6.460 17 N -0.204 5.204 18 C -0.426 4.426 19 H 0.121 0.879 20 C -0.181 4.181 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.094 4.094 27 C -0.121 4.121 28 H 0.117 0.883 29 C -0.012 4.012 30 O -0.054 6.054 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.174 0.826 35 H 0.178 0.822 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.117 0.883 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.225 0.775 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.103 0.897 46 H 0.097 0.903 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.005 24.058 0.764 24.256 hybrid contribution -0.273 -0.431 -1.239 1.340 sum 2.732 23.627 -0.475 23.789 Atomic orbital electron populations 1.20451 0.84433 1.04706 1.04122 1.22942 0.94457 0.84274 1.01618 1.21587 0.92258 0.99844 1.10741 1.21933 0.98691 0.92781 1.00215 1.21896 0.81842 0.94342 1.14833 1.16105 0.86111 0.79670 0.76786 1.90886 1.22243 1.75237 1.52034 1.48995 1.09952 1.04080 1.71768 1.22806 0.86202 0.93259 0.99943 1.23169 0.95227 0.94086 0.99488 0.88139 1.23574 0.97583 0.89277 0.98029 1.65439 1.01081 1.04060 1.49690 1.22067 0.99897 0.93323 0.94598 1.19693 0.87267 0.83594 0.86372 1.90513 1.54593 1.71963 1.28919 1.41876 1.29393 1.20329 1.28767 1.19737 1.06943 1.02640 1.13307 0.87888 1.25259 0.99120 0.97692 0.95980 1.69617 1.40286 1.24730 1.19781 0.85809 0.80548 0.79347 0.78699 1.19229 1.20805 1.20764 1.23328 0.94527 0.92931 0.98646 1.22960 0.95729 0.93881 0.99494 0.88273 1.22684 0.92361 0.86664 0.99521 1.84123 1.15975 1.34517 1.70792 0.89440 0.89881 0.88899 0.82640 0.82249 0.88993 0.90270 0.93851 0.88337 0.93102 0.89219 0.77542 0.91958 0.93514 0.89691 0.90349 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.41 36.01 0.37 0.00 16 2 C 0.02 0.16 7.31 -35.41 -0.26 -0.10 16 3 C -0.23 -1.82 10.77 -39.89 -0.43 -2.25 16 4 C -0.12 -1.17 10.62 -39.39 -0.42 -1.59 16 5 C -0.08 -0.90 6.98 -36.80 -0.26 -1.16 16 6 C 0.62 8.19 7.89 -12.86 -0.10 8.09 16 7 O -0.53 -8.18 17.15 5.19 0.09 -8.09 16 8 N -0.62 -7.15 3.31 -170.80 -0.57 -7.71 16 9 C 0.10 1.06 6.27 -2.52 -0.02 1.04 16 10 C -0.10 -1.15 4.23 -87.16 -0.37 -1.52 16 11 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 12 C 0.04 0.62 5.50 -1.26 -0.01 0.62 16 13 N -0.48 -7.55 4.99 -230.07 -1.15 -8.70 16 14 C 0.03 0.57 5.34 -4.97 -0.03 0.54 16 15 C 0.45 10.30 7.64 -10.98 -0.08 10.22 16 16 O -0.58 -15.30 14.85 5.55 0.08 -15.22 16 17 N -0.57 -14.15 5.29 -10.96 -0.06 -14.21 16 18 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 21 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 22 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 C 0.03 0.40 5.95 -2.07 -0.01 0.39 16 27 C -0.10 -1.08 4.13 -87.74 -0.36 -1.44 16 28 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 29 C 0.11 1.13 6.59 -2.30 -0.02 1.12 16 30 O -0.16 -1.65 7.82 4.98 0.04 -1.62 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.16 1.44 8.06 -52.48 -0.42 1.02 16 36 H 0.09 0.94 5.50 -51.93 -0.29 0.66 16 37 H 0.08 0.80 7.19 -51.93 -0.37 0.43 16 38 H 0.04 0.58 6.86 -51.93 -0.36 0.23 16 39 H 0.10 1.69 7.25 -51.93 -0.38 1.32 16 40 H 0.05 0.79 7.77 -51.93 -0.40 0.38 16 41 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 42 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 43 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 44 H 0.05 0.49 7.06 -51.93 -0.37 0.13 16 45 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.08 0.74 7.18 -51.93 -0.37 0.37 16 47 H 0.09 0.91 7.87 -51.93 -0.41 0.50 16 LS Contribution 385.23 15.07 5.81 5.81 Total: -1.00 -33.71 385.23 -8.86 -42.57 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -6.58 Total: 8.86 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -2.22 Total: 6.09 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -1.05 Total: -54.26 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: 0.21 Total: -24.92 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.71 -8.86 -42.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754841812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.787 kcal (2) G-P(sol) polarization free energy of solvation -33.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds