Wall clock time and date at job start Wed Apr 1 2020 05:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35135 * 125.61769 * 2 1 4 4 C 1.40365 * 107.11128 * 179.97438 * 3 2 1 5 5 C 1.36542 * 106.71321 * 0.02562 * 4 3 2 6 6 C 1.46655 * 125.99035 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99810 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00110 * 179.72349 * 6 5 4 9 9 C 1.48313 * 128.20208 * 359.94770 * 8 6 5 10 10 C 1.53996 * 104.57800 * 221.86970 * 9 8 6 11 11 H 1.09004 * 112.89411 * 97.90392 * 10 9 8 12 12 C 1.55901 * 108.94971 * 224.42581 * 10 9 8 13 13 N 1.48731 * 104.36613 * 136.69339 * 12 10 9 14 14 C 1.46901 * 111.00090 * 198.76358 * 13 12 10 15 15 C 1.50707 * 109.46955 * 284.52674 * 14 13 12 16 16 O 1.21292 * 120.00069 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99716 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99593 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99874 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99919 * 180.02562 * 18 17 15 21 21 N 1.31409 * 119.99872 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99975 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47307 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46746 * 120.00229 * 22 20 18 25 25 H 1.48502 * 109.47197 * 240.00020 * 22 20 18 26 26 C 1.48730 * 103.49900 * 317.89745 * 13 12 10 27 27 C 1.54409 * 104.34761 * 41.79778 * 26 13 12 28 28 H 1.08999 * 112.56478 * 98.12697 * 27 26 13 29 29 C 1.48319 * 128.20007 * 180.27528 * 8 6 5 30 30 O 1.33936 * 125.61421 * 180.26981 * 2 1 3 31 31 H 1.09005 * 109.47226 * 89.99908 * 1 2 3 32 32 H 1.08995 * 109.47126 * 210.00043 * 1 2 3 33 33 H 1.09004 * 109.46843 * 329.99964 * 1 2 3 34 34 H 1.07992 * 126.44300 * 359.97438 * 3 2 1 35 35 H 1.08005 * 126.64223 * 179.97438 * 4 3 2 36 36 H 1.09002 * 110.45594 * 340.62785 * 9 8 6 37 37 H 1.09004 * 110.45329 * 103.18570 * 9 8 6 38 38 H 1.09007 * 110.70464 * 17.84509 * 12 10 9 39 39 H 1.08998 * 110.30349 * 255.34227 * 12 10 9 40 40 H 1.08996 * 109.47401 * 44.52735 * 14 13 12 41 41 H 1.08999 * 109.47484 * 164.52621 * 14 13 12 42 42 H 0.97001 * 120.00288 * 0.02562 * 17 15 14 43 43 H 0.96997 * 120.00197 * 179.97438 * 21 20 18 44 44 H 1.09005 * 110.45588 * 283.09031 * 26 13 12 45 45 H 1.08995 * 110.56667 * 160.57299 * 26 13 12 46 46 H 1.08997 * 110.45359 * 256.80987 * 29 8 6 47 47 H 1.08996 * 110.45726 * 19.24444 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6530 0.0006 5 6 3.5823 -0.7117 0.0004 6 6 4.7414 -1.6103 0.0003 7 8 5.8680 -1.1501 -0.0001 8 7 4.5589 -2.9456 0.0056 9 6 3.2799 -3.6965 0.0131 10 6 3.5114 -4.8464 1.0111 11 1 3.1134 -4.6333 2.0032 12 6 2.9540 -6.1675 0.3993 13 7 3.9973 -7.1834 0.7021 14 6 3.8546 -8.3596 -0.1664 15 6 2.6897 -9.1924 0.3034 16 8 2.0418 -8.8405 1.2665 17 7 2.3672 -10.3277 -0.3474 18 6 1.3078 -11.0857 0.0803 19 1 0.7315 -10.7727 0.9383 20 6 0.9756 -12.2564 -0.5903 21 7 1.6771 -12.6375 -1.6341 22 14 -0.4683 -13.2887 -0.0081 23 1 -1.0896 -12.6465 1.1780 24 1 -1.4728 -13.3934 -1.0968 25 1 0.0093 -14.6466 0.3570 26 6 5.2706 -6.4669 0.4238 27 6 5.0533 -5.0570 1.0148 28 1 5.4906 -4.9475 2.0072 29 6 5.5895 -4.0122 0.0121 30 8 2.2869 -1.0888 -0.0051 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.9614 2.1260 -0.0004 35 1 4.5114 1.2702 0.0004 36 1 2.4649 -3.0574 0.3528 37 1 3.0656 -4.0938 -0.9790 38 1 2.8209 -6.0674 -0.6779 39 1 2.0110 -6.4364 0.8754 40 1 3.6789 -8.0349 -1.1919 41 1 4.7668 -8.9547 -0.1249 42 1 2.8851 -10.6090 -1.1179 43 1 1.4455 -13.4549 -2.1020 44 1 5.4470 -6.4066 -0.6502 45 1 6.1052 -6.9631 0.9189 46 1 5.6885 -4.4523 -0.9801 47 1 6.5470 -3.6147 0.3488 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754841812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:29 Heat of formation + Delta-G solvation = -53.651884 kcal Electronic energy + Delta-G solvation = -30117.610216 eV Core-core repulsion = 25880.603821 eV Total energy + Delta-G solvation = -4237.006395 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.76265 -41.57763 -40.26065 -39.48389 -36.96566 -35.84663 -34.35097 -33.33946 -33.11610 -32.53438 -31.63103 -29.21528 -28.08331 -26.91205 -26.47490 -24.92854 -22.94238 -22.54617 -22.31636 -21.11687 -20.88712 -20.54637 -19.81705 -18.71362 -17.79628 -17.68263 -17.44503 -16.94063 -16.69762 -16.43576 -16.25216 -16.00280 -15.94485 -15.38921 -15.32113 -14.67046 -14.47818 -14.23010 -14.09309 -14.06449 -13.97427 -13.72381 -13.58932 -13.45541 -13.18598 -13.15126 -12.95855 -12.78175 -12.62111 -12.42405 -12.38198 -12.12204 -11.96825 -11.86149 -11.68083 -11.49260 -11.44120 -11.08303 -10.31271 -10.10120 -9.98346 -9.47977 -9.35748 -8.44915 -5.93053 -0.07047 1.30189 1.37338 1.41839 1.42584 1.56448 1.89601 1.99321 2.08844 2.29760 2.82494 3.15138 3.22775 3.29600 3.52709 3.57280 3.79979 3.85001 3.89726 3.99979 4.16134 4.19758 4.23555 4.33061 4.41504 4.45933 4.50555 4.54432 4.60869 4.63366 4.67673 4.71171 4.72918 4.75051 4.81124 4.86136 5.00722 5.09707 5.13069 5.14423 5.25023 5.42981 5.44188 5.85012 5.86213 5.89856 6.10151 6.23101 6.63313 6.78283 7.15759 7.59747 8.15939 8.72795 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016220 B = 0.002108 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.833228 B =13281.297823 C =14606.893500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.022 3.978 3 C -0.229 4.229 4 C -0.116 4.116 5 C -0.111 4.111 6 C 0.620 3.380 7 O -0.561 6.561 8 N -0.617 5.617 9 C 0.108 3.892 10 C -0.092 4.092 11 H 0.095 0.905 12 C 0.047 3.953 13 N -0.507 5.507 14 C 0.046 3.954 15 C 0.443 3.557 16 O -0.616 6.616 17 N -0.577 5.577 18 C -0.329 4.329 19 H 0.078 0.922 20 C -0.015 4.015 21 N -0.922 5.922 22 Si 0.991 3.009 23 H -0.274 1.274 24 H -0.271 1.271 25 H -0.272 1.272 26 C 0.039 3.961 27 C -0.093 4.093 28 H 0.102 0.898 29 C 0.112 3.888 30 O -0.168 6.168 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.184 0.816 35 H 0.164 0.836 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.067 0.933 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.666 25.094 -1.055 25.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.031 4.031 3 C -0.247 4.247 4 C -0.137 4.137 5 C -0.162 4.162 6 C 0.411 3.589 7 O -0.442 6.442 8 N -0.348 5.348 9 C -0.014 4.014 10 C -0.112 4.112 11 H 0.114 0.886 12 C -0.082 4.082 13 N -0.231 5.231 14 C -0.085 4.085 15 C 0.230 3.770 16 O -0.501 6.501 17 N -0.215 5.215 18 C -0.458 4.458 19 H 0.096 0.904 20 C -0.214 4.214 21 N -0.563 5.563 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.089 4.089 27 C -0.112 4.112 28 H 0.121 0.879 29 C -0.010 4.010 30 O -0.065 6.065 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.134 0.866 34 H 0.202 0.798 35 H 0.181 0.819 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.229 0.771 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.114 0.886 46 H 0.111 0.889 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.712 24.971 -0.005 25.118 hybrid contribution -0.231 -0.639 -0.974 1.188 sum 2.481 24.332 -0.979 24.478 Atomic orbital electron populations 1.20670 0.81786 1.05900 1.05320 1.23750 0.95895 0.83784 0.99638 1.21932 0.91149 1.01253 1.10399 1.22217 0.99975 0.92467 0.99002 1.21742 0.82096 0.94647 1.17739 1.16314 0.86196 0.80102 0.76279 1.90849 1.23564 1.75862 1.53934 1.49046 1.10601 1.04005 1.71109 1.22749 0.85942 0.92687 0.99997 1.23042 0.95790 0.93050 0.99342 0.88621 1.23463 0.96035 0.90211 0.98446 1.65360 1.03195 1.04398 1.50122 1.21913 0.97642 0.93382 0.95589 1.20790 0.87949 0.83048 0.85197 1.90487 1.56293 1.72742 1.30601 1.41950 1.29257 1.21008 1.29271 1.19664 1.08418 1.04160 1.13576 0.90418 1.26015 1.01361 0.98161 0.95882 1.69674 1.41226 1.25202 1.20180 0.84893 0.77607 0.77786 0.78193 1.19826 1.19613 1.19744 1.23387 0.92694 0.92655 1.00120 1.22901 0.94854 0.93632 0.99858 0.87942 1.22747 0.92044 0.86145 1.00079 1.84098 1.15691 1.35582 1.71174 0.88073 0.89805 0.86572 0.79823 0.81857 0.88783 0.89418 0.92728 0.92020 0.90832 0.87125 0.77052 0.91393 0.91531 0.88615 0.88917 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.41 71.24 0.74 0.20 16 2 C 0.02 0.32 7.31 24.97 0.18 0.50 16 3 C -0.23 -3.27 10.77 22.07 0.24 -3.03 16 4 C -0.12 -2.27 10.62 22.39 0.24 -2.03 16 5 C -0.11 -2.57 6.98 24.07 0.17 -2.40 16 6 C 0.62 16.31 7.89 86.44 0.68 16.99 16 7 O -0.56 -17.70 17.15 -4.36 -0.07 -17.77 16 8 N -0.62 -13.84 3.31 -812.49 -2.69 -16.53 16 9 C 0.11 2.18 6.27 86.37 0.54 2.72 16 10 C -0.09 -2.06 4.23 -8.55 -0.04 -2.10 16 11 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 12 C 0.05 1.32 5.50 86.95 0.48 1.80 16 13 N -0.51 -15.40 4.99 -881.82 -4.40 -19.80 16 14 C 0.05 1.53 5.34 85.56 0.46 1.98 16 15 C 0.44 20.71 7.64 87.66 0.67 21.38 16 16 O -0.62 -33.69 14.85 -3.07 -0.05 -33.73 16 17 N -0.58 -29.25 5.29 -306.97 -1.62 -30.87 16 18 C -0.33 -18.53 9.68 84.04 0.81 -17.71 16 19 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 20 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 21 N -0.92 -49.43 13.05 21.66 0.28 -49.15 16 22 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 C 0.04 0.82 5.95 86.43 0.51 1.33 16 27 C -0.09 -1.84 4.13 -8.93 -0.04 -1.88 16 28 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 29 C 0.11 2.13 6.59 86.51 0.57 2.70 16 30 O -0.17 -3.41 7.82 -5.11 -0.04 -3.45 16 31 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.12 0.26 8.14 -2.38 -0.02 0.24 16 34 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 36 H 0.09 1.88 5.50 -2.39 -0.01 1.87 16 37 H 0.09 1.64 7.19 -2.38 -0.02 1.62 16 38 H 0.05 1.40 6.86 -2.38 -0.02 1.39 16 39 H 0.06 2.20 7.25 -2.39 -0.02 2.19 16 40 H 0.07 2.11 7.77 -2.39 -0.02 2.09 16 41 H 0.11 3.20 8.08 -2.39 -0.02 3.18 16 42 H 0.40 19.01 7.90 -92.71 -0.73 18.27 16 43 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 44 H 0.07 1.17 7.06 -2.38 -0.02 1.15 16 45 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.09 1.52 7.18 -2.39 -0.02 1.51 16 47 H 0.09 1.71 7.87 -2.39 -0.02 1.69 16 Total: -1.00 -74.76 385.23 0.40 -74.36 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: 0.28 Total: 32.04 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 6.69 Total: 20.14 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -8.43 Total: -116.36 kcal Atomic # 8 Polarization: -54.79 SS G_CDS: -0.16 Total: -54.95 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -74.76 0.40 -74.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754841812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.705 kcal (2) G-P(sol) polarization free energy of solvation -74.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds