Wall clock time and date at job start Wed Apr 1 2020 05:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31068 * 126.66110 * 2 1 4 4 N 1.28841 * 107.99170 * 179.97438 * 3 2 1 5 5 N 1.28741 * 109.39647 * 359.72616 * 4 3 2 6 6 N 1.29024 * 108.80618 * 0.44516 * 5 4 3 7 7 C 1.46497 * 126.43770 * 179.83171 * 6 5 4 8 8 H 1.08992 * 109.47391 * 179.69017 * 7 6 5 9 9 C 1.53005 * 109.47248 * 59.68259 * 7 6 5 10 10 C 1.50698 * 109.46595 * 65.00186 * 9 7 6 11 11 C 1.38268 * 119.98784 * 90.00253 * 10 9 7 12 12 C 1.38222 * 120.05453 * 180.02562 * 11 10 9 13 13 C 1.38221 * 120.02353 * 0.24944 * 12 11 10 14 14 C 1.38444 * 119.97391 * 359.42626 * 13 12 11 15 15 F 1.35092 * 120.02735 * 180.29771 * 14 13 12 16 16 C 1.38175 * 119.99019 * 269.97732 * 10 9 7 17 17 C 1.50706 * 109.47096 * 299.68546 * 7 6 5 18 18 O 1.21285 * 119.99919 * 119.99768 * 17 7 6 19 19 N 1.34769 * 120.00161 * 300.00507 * 17 7 6 20 20 C 1.46502 * 120.00203 * 179.97438 * 19 17 7 21 21 H 1.09003 * 109.46901 * 35.00197 * 20 19 17 22 22 C 1.52997 * 109.47010 * 274.99733 * 20 19 17 23 23 C 1.50709 * 109.47086 * 154.99459 * 20 19 17 24 24 H 1.07996 * 119.99503 * 35.00308 * 23 20 19 25 25 C 1.37872 * 119.99642 * 215.00209 * 23 20 19 26 26 N 1.31518 * 119.99377 * 184.91741 * 25 23 20 27 27 Si 1.86793 * 120.00360 * 4.91816 * 25 23 20 28 28 H 1.48504 * 109.47260 * 84.83225 * 27 25 23 29 29 H 1.48501 * 109.47350 * 204.83108 * 27 25 23 30 30 H 1.48495 * 109.47197 * 324.83367 * 27 25 23 31 31 H 1.09004 * 109.47029 * 270.05025 * 1 2 3 32 32 H 1.09000 * 109.46606 * 30.04449 * 1 2 3 33 33 H 1.08998 * 109.47156 * 150.04527 * 1 2 3 34 34 H 1.09000 * 109.47089 * 305.00644 * 9 7 6 35 35 H 1.08999 * 109.46908 * 185.00166 * 9 7 6 36 36 H 1.07999 * 119.97444 * 359.97438 * 11 10 9 37 37 H 1.08003 * 119.99113 * 179.97438 * 12 11 10 38 38 H 1.08003 * 120.01546 * 179.72673 * 13 12 11 39 39 H 1.07999 * 120.01129 * 359.97438 * 16 10 9 40 40 H 0.97002 * 119.99753 * 359.97438 * 19 17 7 41 41 H 1.09000 * 109.46839 * 175.03715 * 22 20 19 42 42 H 1.09002 * 109.47235 * 295.03151 * 22 20 19 43 43 H 1.08992 * 109.47352 * 55.03509 * 22 20 19 44 44 H 0.97009 * 119.99660 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2896 1.0514 0.0000 4 7 3.5102 0.6390 0.0005 5 7 3.5266 -0.6483 0.0067 6 7 2.3106 -1.0797 0.0007 7 6 1.8847 -2.4814 0.0010 8 1 0.7958 -2.5303 0.0006 9 6 2.4261 -3.1788 1.2507 10 6 1.7968 -2.5706 2.4775 11 6 0.6183 -3.0908 2.9799 12 6 0.0397 -2.5337 4.1048 13 6 0.6361 -1.4524 4.7258 14 6 1.8196 -0.9349 4.2278 15 9 2.4065 0.1181 4.8375 16 6 2.3980 -1.4936 3.1004 17 6 2.4188 -3.1690 -1.2291 18 8 3.1596 -4.1229 -1.1172 19 7 2.0735 -2.7240 -2.4534 20 6 2.5931 -3.3921 -3.6492 21 1 2.6780 -4.4621 -3.4596 22 6 3.9716 -2.8239 -3.9924 23 6 1.6523 -3.1597 -4.8034 24 1 1.1283 -2.2195 -4.8919 25 6 1.4607 -4.1473 -5.7461 26 7 0.7161 -3.9108 -6.8041 27 14 2.2586 -5.8211 -5.5208 28 1 1.3956 -6.6690 -4.6595 29 1 2.4275 -6.4714 -6.8451 30 1 3.5870 -5.6539 -4.8785 31 1 -0.3633 0.0009 1.0277 32 1 -0.3632 0.8896 -0.5145 33 1 -0.3633 -0.8904 -0.5131 34 1 3.5078 -3.0531 1.2970 35 1 2.1851 -4.2409 1.2072 36 1 0.1491 -3.9326 2.4924 37 1 -0.8810 -2.9406 4.4960 38 1 0.1815 -1.0145 5.6022 39 1 3.3190 -1.0879 2.7084 40 1 1.4808 -1.9613 -2.5428 41 1 4.3962 -3.3804 -4.8278 42 1 3.8735 -1.7738 -4.2678 43 1 4.6271 -2.9126 -3.1261 44 1 0.5810 -4.6057 -7.4673 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194641038.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:33 Heat of formation + Delta-G solvation = 55.055378 kcal Electronic energy + Delta-G solvation = -31148.774609 eV Core-core repulsion = 26825.314561 eV Total energy + Delta-G solvation = -4323.460048 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.18482 -44.22684 -40.09614 -39.23613 -36.22478 -35.21601 -33.65404 -33.21167 -32.54563 -31.04222 -30.51210 -29.44212 -28.52860 -25.77258 -25.41470 -23.77558 -23.15328 -22.45536 -21.96261 -20.72674 -19.93136 -18.54385 -17.52572 -17.45518 -17.13480 -16.62379 -16.54999 -16.12482 -15.89871 -15.70094 -15.04788 -14.59644 -14.38945 -14.26415 -14.01636 -13.77189 -13.64451 -13.49042 -13.41247 -12.92225 -12.71783 -12.65907 -12.51919 -12.35918 -12.20117 -12.10539 -11.82722 -11.64108 -11.43439 -11.25212 -11.21148 -11.08478 -10.96250 -10.73841 -10.07350 -10.00816 -9.64502 -9.38085 -9.35622 -9.05834 -8.86031 -8.44316 -6.37437 -4.42963 0.69307 0.78336 1.20857 1.60318 2.26619 2.90199 3.05163 3.14682 3.23567 3.29351 3.33728 3.85456 3.88502 4.05614 4.18850 4.22269 4.33959 4.35871 4.46947 4.63887 4.74799 4.83679 4.92466 5.06602 5.07799 5.13377 5.24964 5.34270 5.37488 5.51466 5.62155 5.67408 5.72642 5.75532 5.87712 6.03132 6.12779 6.16828 6.37695 6.47818 6.52666 6.72955 6.94215 7.15080 7.30504 7.81229 8.27828 8.43374 8.63147 8.63435 9.22529 10.73862 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.015977 B = 0.003240 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.077639 B = 8639.846283 C = 9239.833036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.187 3.813 3 N -0.303 5.303 4 N -0.075 5.075 5 N -0.081 5.081 6 N -0.297 5.297 7 C 0.130 3.870 8 H 0.138 0.862 9 C -0.077 4.077 10 C -0.063 4.063 11 C -0.123 4.123 12 C -0.087 4.087 13 C -0.154 4.154 14 C 0.103 3.897 15 F -0.138 7.138 16 C -0.146 4.146 17 C 0.499 3.501 18 O -0.527 6.527 19 N -0.688 5.688 20 C 0.232 3.768 21 H 0.054 0.946 22 C -0.148 4.148 23 C -0.535 4.535 24 H 0.079 0.921 25 C 0.084 3.916 26 N -0.883 5.883 27 Si 0.874 3.126 28 H -0.272 1.272 29 H -0.284 1.284 30 H -0.260 1.260 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.392 0.608 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.031 0.969 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.449 2.495 21.071 21.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 N -0.153 5.153 4 N -0.069 5.069 5 N -0.066 5.066 6 N -0.101 5.101 7 C 0.024 3.976 8 H 0.155 0.845 9 C -0.115 4.115 10 C -0.063 4.063 11 C -0.141 4.141 12 C -0.105 4.105 13 C -0.173 4.173 14 C 0.084 3.916 15 F -0.116 7.116 16 C -0.165 4.165 17 C 0.279 3.721 18 O -0.403 6.403 19 N -0.336 5.336 20 C 0.131 3.869 21 H 0.072 0.928 22 C -0.207 4.207 23 C -0.573 4.573 24 H 0.097 0.903 25 C -0.122 4.122 26 N -0.519 5.519 27 Si 0.700 3.300 28 H -0.197 1.197 29 H -0.210 1.210 30 H -0.184 1.184 31 H 0.112 0.888 32 H 0.124 0.876 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.136 0.864 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.149 0.851 40 H 0.225 0.775 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.050 0.950 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.687 2.411 20.916 21.375 hybrid contribution -0.603 -0.794 0.021 0.998 sum -4.290 1.616 20.937 21.433 Atomic orbital electron populations 1.20456 0.82645 1.05875 1.04842 1.26130 0.98762 0.82524 1.01666 1.75011 0.96909 1.24110 1.19246 1.78633 1.12797 1.00597 1.14828 1.78952 1.02091 1.07989 1.17600 1.48403 1.04787 1.08963 1.47930 1.22193 1.02619 0.75212 0.97561 0.84456 1.20801 1.02678 1.00775 0.87243 1.19667 0.95141 0.94984 0.96536 1.21202 0.95232 1.00758 0.96889 1.21028 0.99722 0.94767 0.95004 1.21203 0.95230 0.98727 1.02151 1.17706 0.93448 0.86966 0.93501 1.91522 1.83592 1.54397 1.82131 1.21139 1.01807 0.97746 0.95762 1.19960 0.82538 0.85252 0.84318 1.90729 1.35633 1.27970 1.86013 1.46804 1.47827 1.33260 1.05707 1.19257 0.92106 0.93545 0.82029 0.92785 1.22210 0.97748 1.01053 0.99672 1.20948 1.26634 1.03196 1.06480 0.90323 1.24936 0.94063 0.98566 0.94612 1.69878 1.37543 1.34331 1.10138 0.86896 0.81103 0.84115 0.77860 1.19723 1.20959 1.18430 0.88752 0.87585 0.89284 0.87895 0.86447 0.84670 0.84633 0.84659 0.85147 0.77509 0.92557 0.93428 0.95021 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.06 36.01 0.36 -0.21 16 2 C 0.19 2.27 8.13 -155.44 -1.26 1.00 16 3 N -0.30 -4.64 12.36 32.70 0.40 -4.24 16 4 N -0.07 -1.28 13.43 60.35 0.81 -0.47 16 5 N -0.08 -1.29 12.97 60.35 0.78 -0.51 16 6 N -0.30 -3.86 2.43 -52.93 -0.13 -3.98 16 7 C 0.13 1.51 2.80 -69.08 -0.19 1.31 16 8 H 0.14 1.09 6.77 -51.93 -0.35 0.74 16 9 C -0.08 -0.80 4.27 -27.88 -0.12 -0.92 16 10 C -0.06 -0.58 4.95 -104.64 -0.52 -1.10 16 11 C -0.12 -0.86 9.70 -39.58 -0.38 -1.24 16 12 C -0.09 -0.55 10.04 -39.59 -0.40 -0.95 16 13 C -0.15 -1.21 10.03 -39.51 -0.40 -1.61 16 14 C 0.10 1.08 7.30 -39.42 -0.29 0.79 16 15 F -0.14 -1.67 17.27 2.25 0.04 -1.63 16 16 C -0.15 -1.59 9.29 -39.52 -0.37 -1.95 16 17 C 0.50 8.24 7.26 -10.99 -0.08 8.16 16 18 O -0.53 -10.37 15.58 5.55 0.09 -10.28 16 19 N -0.69 -12.61 5.07 -54.93 -0.28 -12.89 16 20 C 0.23 5.19 2.22 -69.08 -0.15 5.04 16 21 H 0.05 1.30 4.73 -51.93 -0.25 1.05 16 22 C -0.15 -3.22 9.47 37.16 0.35 -2.87 16 23 C -0.53 -13.62 9.05 -34.44 -0.31 -13.93 16 24 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16 25 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 26 N -0.88 -24.91 13.96 55.43 0.77 -24.14 16 27 Si 0.87 20.38 26.99 -169.99 -4.59 15.80 16 28 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 30 H -0.26 -6.00 6.82 56.52 0.39 -5.62 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.50 7.17 -51.93 -0.37 0.12 16 34 H 0.10 1.26 8.05 -51.93 -0.42 0.85 16 35 H 0.12 1.10 7.90 -51.93 -0.41 0.69 16 36 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 37 H 0.14 0.51 8.06 -52.48 -0.42 0.09 16 38 H 0.14 0.82 8.06 -52.48 -0.42 0.39 16 39 H 0.13 1.65 8.04 -52.49 -0.42 1.23 16 40 H 0.39 6.46 8.59 -40.82 -0.35 6.11 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 383.62 15.07 5.78 5.78 Total: -1.00 -32.75 383.62 -5.70 -38.45 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.53 Total: 4.44 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -3.86 Total: -6.33 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 2.36 Total: -46.22 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.59 Total: 15.80 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.75 -5.70 -38.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194641038.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.505 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds