Wall clock time and date at job start Wed Apr 1 2020 05:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31068 * 126.66110 * 2 1 4 4 N 1.28841 * 107.99170 * 179.97438 * 3 2 1 5 5 N 1.28741 * 109.39647 * 359.72616 * 4 3 2 6 6 N 1.29024 * 108.80618 * 0.44516 * 5 4 3 7 7 C 1.46497 * 126.43770 * 179.83171 * 6 5 4 8 8 H 1.08992 * 109.47391 * 179.69017 * 7 6 5 9 9 C 1.53005 * 109.47248 * 59.68259 * 7 6 5 10 10 C 1.50698 * 109.46595 * 65.00186 * 9 7 6 11 11 C 1.38268 * 119.98784 * 90.00253 * 10 9 7 12 12 C 1.38222 * 120.05453 * 180.02562 * 11 10 9 13 13 C 1.38221 * 120.02353 * 0.24944 * 12 11 10 14 14 C 1.38444 * 119.97391 * 359.42626 * 13 12 11 15 15 F 1.35092 * 120.02735 * 180.29771 * 14 13 12 16 16 C 1.38175 * 119.99019 * 269.97732 * 10 9 7 17 17 C 1.50706 * 109.47096 * 299.68546 * 7 6 5 18 18 O 1.21285 * 119.99919 * 119.99768 * 17 7 6 19 19 N 1.34769 * 120.00161 * 300.00507 * 17 7 6 20 20 C 1.46502 * 120.00203 * 179.97438 * 19 17 7 21 21 H 1.09003 * 109.46901 * 35.00197 * 20 19 17 22 22 C 1.52997 * 109.47010 * 274.99733 * 20 19 17 23 23 C 1.50709 * 109.47086 * 154.99459 * 20 19 17 24 24 H 1.07996 * 119.99503 * 35.00308 * 23 20 19 25 25 C 1.37872 * 119.99642 * 215.00209 * 23 20 19 26 26 N 1.31518 * 119.99377 * 184.91741 * 25 23 20 27 27 Si 1.86793 * 120.00360 * 4.91816 * 25 23 20 28 28 H 1.48504 * 109.47260 * 84.83225 * 27 25 23 29 29 H 1.48501 * 109.47350 * 204.83108 * 27 25 23 30 30 H 1.48495 * 109.47197 * 324.83367 * 27 25 23 31 31 H 1.09004 * 109.47029 * 270.05025 * 1 2 3 32 32 H 1.09000 * 109.46606 * 30.04449 * 1 2 3 33 33 H 1.08998 * 109.47156 * 150.04527 * 1 2 3 34 34 H 1.09000 * 109.47089 * 305.00644 * 9 7 6 35 35 H 1.08999 * 109.46908 * 185.00166 * 9 7 6 36 36 H 1.07999 * 119.97444 * 359.97438 * 11 10 9 37 37 H 1.08003 * 119.99113 * 179.97438 * 12 11 10 38 38 H 1.08003 * 120.01546 * 179.72673 * 13 12 11 39 39 H 1.07999 * 120.01129 * 359.97438 * 16 10 9 40 40 H 0.97002 * 119.99753 * 359.97438 * 19 17 7 41 41 H 1.09000 * 109.46839 * 175.03715 * 22 20 19 42 42 H 1.09002 * 109.47235 * 295.03151 * 22 20 19 43 43 H 1.08992 * 109.47352 * 55.03509 * 22 20 19 44 44 H 0.97009 * 119.99660 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2896 1.0514 0.0000 4 7 3.5102 0.6390 0.0005 5 7 3.5266 -0.6483 0.0067 6 7 2.3106 -1.0797 0.0007 7 6 1.8847 -2.4814 0.0010 8 1 0.7958 -2.5303 0.0006 9 6 2.4261 -3.1788 1.2507 10 6 1.7968 -2.5706 2.4775 11 6 0.6183 -3.0908 2.9799 12 6 0.0397 -2.5337 4.1048 13 6 0.6361 -1.4524 4.7258 14 6 1.8196 -0.9349 4.2278 15 9 2.4065 0.1181 4.8375 16 6 2.3980 -1.4936 3.1004 17 6 2.4188 -3.1690 -1.2291 18 8 3.1596 -4.1229 -1.1172 19 7 2.0735 -2.7240 -2.4534 20 6 2.5931 -3.3921 -3.6492 21 1 2.6780 -4.4621 -3.4596 22 6 3.9716 -2.8239 -3.9924 23 6 1.6523 -3.1597 -4.8034 24 1 1.1283 -2.2195 -4.8919 25 6 1.4607 -4.1473 -5.7461 26 7 0.7161 -3.9108 -6.8041 27 14 2.2586 -5.8211 -5.5208 28 1 1.3956 -6.6690 -4.6595 29 1 2.4275 -6.4714 -6.8451 30 1 3.5870 -5.6539 -4.8785 31 1 -0.3633 0.0009 1.0277 32 1 -0.3632 0.8896 -0.5145 33 1 -0.3633 -0.8904 -0.5131 34 1 3.5078 -3.0531 1.2970 35 1 2.1851 -4.2409 1.2072 36 1 0.1491 -3.9326 2.4924 37 1 -0.8810 -2.9406 4.4960 38 1 0.1815 -1.0145 5.6022 39 1 3.3190 -1.0879 2.7084 40 1 1.4808 -1.9613 -2.5428 41 1 4.3962 -3.3804 -4.8278 42 1 3.8735 -1.7738 -4.2678 43 1 4.6271 -2.9126 -3.1261 44 1 0.5810 -4.6057 -7.4673 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194641038.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:32 Heat of formation + Delta-G solvation = 33.588904 kcal Electronic energy + Delta-G solvation = -31149.705465 eV Core-core repulsion = 26825.314561 eV Total energy + Delta-G solvation = -4324.390904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.150 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.99687 -45.31168 -41.26014 -40.12121 -37.38434 -36.79944 -34.63033 -34.48221 -34.00171 -32.07953 -31.60635 -30.51795 -29.34491 -27.42425 -26.65645 -24.94247 -23.83437 -23.49200 -22.97927 -21.98534 -21.40072 -19.89586 -18.77560 -18.38936 -18.25565 -17.74651 -17.34476 -17.21340 -17.10917 -16.69988 -16.13748 -16.01281 -15.53904 -15.18981 -15.18223 -14.89378 -14.60151 -14.52449 -14.44804 -14.13367 -14.07881 -13.76556 -13.61541 -13.36538 -13.12139 -13.06926 -13.02046 -12.90944 -12.84281 -12.62486 -12.51532 -12.33992 -12.21641 -12.03284 -11.90765 -11.31979 -11.18350 -10.92865 -10.83245 -10.04912 -10.04110 -9.72433 -8.41404 -6.49936 0.05102 0.14038 0.17392 0.55126 1.15308 1.29896 1.35478 1.44600 1.66083 1.96806 2.25520 2.52238 2.94632 3.07016 3.10911 3.18775 3.28609 3.53707 3.60254 3.71137 3.78113 4.04285 4.20089 4.24732 4.27236 4.33877 4.44064 4.56281 4.59699 4.61060 4.70936 4.71914 4.74848 4.87185 4.92986 4.95156 5.04801 5.12255 5.21996 5.23446 5.33082 5.33568 5.43772 5.53464 5.87373 6.01728 6.51693 6.61856 7.03526 7.20672 7.51464 8.73145 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.015977 B = 0.003240 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.077639 B = 8639.846283 C = 9239.833036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.202 3.798 3 N -0.333 5.333 4 N -0.104 5.104 5 N -0.105 5.105 6 N -0.295 5.295 7 C 0.140 3.860 8 H 0.187 0.813 9 C -0.071 4.071 10 C -0.066 4.066 11 C -0.108 4.108 12 C -0.074 4.074 13 C -0.148 4.148 14 C 0.073 3.927 15 F -0.157 7.157 16 C -0.162 4.162 17 C 0.500 3.500 18 O -0.558 6.558 19 N -0.693 5.693 20 C 0.239 3.761 21 H 0.044 0.956 22 C -0.143 4.143 23 C -0.530 4.530 24 H 0.054 0.946 25 C 0.037 3.963 26 N -0.926 5.926 27 Si 0.926 3.074 28 H -0.262 1.262 29 H -0.281 1.281 30 H -0.259 1.259 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.134 0.866 36 H 0.168 0.832 37 H 0.174 0.826 38 H 0.154 0.846 39 H 0.098 0.902 40 H 0.402 0.598 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.033 0.967 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.172 0.903 23.059 24.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.075 4.075 3 N -0.183 5.183 4 N -0.098 5.098 5 N -0.091 5.091 6 N -0.099 5.099 7 C 0.035 3.965 8 H 0.204 0.796 9 C -0.109 4.109 10 C -0.067 4.067 11 C -0.126 4.126 12 C -0.092 4.092 13 C -0.166 4.166 14 C 0.054 3.946 15 F -0.136 7.136 16 C -0.182 4.182 17 C 0.283 3.717 18 O -0.435 6.435 19 N -0.341 5.341 20 C 0.136 3.864 21 H 0.062 0.938 22 C -0.202 4.202 23 C -0.568 4.568 24 H 0.072 0.928 25 C -0.164 4.164 26 N -0.564 5.564 27 Si 0.751 3.249 28 H -0.187 1.187 29 H -0.206 1.206 30 H -0.183 1.183 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.094 0.906 35 H 0.152 0.848 36 H 0.185 0.815 37 H 0.191 0.809 38 H 0.172 0.828 39 H 0.117 0.883 40 H 0.236 0.764 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.415 0.838 22.936 23.831 hybrid contribution 0.202 -0.253 -0.524 0.616 sum -6.213 0.585 22.411 23.264 Atomic orbital electron populations 1.20853 0.78806 1.07620 1.06939 1.27003 1.00387 0.81316 0.98782 1.74938 0.96853 1.25707 1.20766 1.78594 1.14063 1.01169 1.15964 1.78889 1.03913 1.07868 1.18469 1.48450 1.04147 1.09584 1.47710 1.22306 1.04976 0.74074 0.95150 0.79630 1.20743 1.01224 1.01599 0.87327 1.19510 0.96206 0.94776 0.96178 1.21556 0.93695 1.00752 0.96616 1.21463 1.00370 0.93356 0.93992 1.21505 0.93848 0.98808 1.02454 1.18030 0.94948 0.87437 0.94141 1.91468 1.84188 1.55445 1.82495 1.20993 1.01342 0.99061 0.96761 1.20588 0.81504 0.84713 0.84875 1.90716 1.36683 1.29493 1.86640 1.46466 1.48496 1.33628 1.05510 1.18911 0.91580 0.93343 0.82595 0.93839 1.22135 0.97609 1.00817 0.99604 1.21072 1.26265 1.02022 1.07402 0.92762 1.25605 0.94690 1.01769 0.94357 1.69980 1.39611 1.35543 1.11238 0.86055 0.80382 0.80528 0.77958 1.18719 1.20630 1.18286 0.86225 0.86707 0.86674 0.90648 0.84814 0.81491 0.80876 0.82842 0.88346 0.76370 0.92910 0.93601 0.94802 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.06 71.24 0.72 -0.18 16 2 C 0.20 4.60 8.13 138.14 1.12 5.72 16 3 N -0.33 -10.24 12.36 -50.45 -0.62 -10.87 16 4 N -0.10 -3.68 13.43 37.01 0.50 -3.18 16 5 N -0.11 -3.46 12.97 37.02 0.48 -2.98 16 6 N -0.29 -7.36 2.43 -321.37 -0.78 -8.14 16 7 C 0.14 2.90 2.80 44.25 0.12 3.02 16 8 H 0.19 2.02 6.77 -2.39 -0.02 2.00 16 9 C -0.07 -1.35 4.27 29.85 0.13 -1.22 16 10 C -0.07 -1.06 4.95 -19.87 -0.10 -1.15 16 11 C -0.11 -0.97 9.70 22.27 0.22 -0.75 16 12 C -0.07 -0.55 10.04 22.26 0.22 -0.33 16 13 C -0.15 -1.84 10.03 22.31 0.22 -1.62 16 14 C 0.07 1.48 7.30 22.38 0.16 1.65 16 15 F -0.16 -3.92 17.27 44.97 0.78 -3.14 16 16 C -0.16 -3.50 9.29 22.31 0.21 -3.29 16 17 C 0.50 15.74 7.26 87.66 0.64 16.38 16 18 O -0.56 -21.33 15.58 -3.05 -0.05 -21.37 16 19 N -0.69 -24.52 5.07 -446.08 -2.26 -26.78 16 20 C 0.24 10.55 2.22 44.25 0.10 10.65 16 21 H 0.04 2.04 4.73 -2.39 -0.01 2.03 16 22 C -0.14 -6.19 9.47 71.98 0.68 -5.51 16 23 C -0.53 -26.97 9.05 25.60 0.23 -26.74 16 24 H 0.05 2.98 8.06 -2.91 -0.02 2.95 16 25 C 0.04 1.97 5.47 84.65 0.46 2.43 16 26 N -0.93 -52.63 13.96 21.45 0.30 -52.33 16 27 Si 0.93 41.56 26.99 68.60 1.85 43.41 16 28 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 29 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 30 H -0.26 -11.44 6.82 99.48 0.68 -10.76 16 31 H 0.12 0.79 8.14 -2.38 -0.02 0.78 16 32 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.11 0.69 7.17 -2.39 -0.02 0.67 16 34 H 0.07 1.88 8.05 -2.39 -0.02 1.86 16 35 H 0.13 2.10 7.90 -2.39 -0.02 2.08 16 36 H 0.17 0.51 8.06 -2.91 -0.02 0.48 16 37 H 0.17 0.09 8.06 -2.91 -0.02 0.06 16 38 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 39 H 0.10 2.71 8.04 -2.91 -0.02 2.69 16 40 H 0.40 12.66 8.59 -92.71 -0.80 11.87 16 41 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.27 14.51 8.31 -92.70 -0.77 13.74 16 Total: -1.00 -75.66 383.62 5.56 -70.10 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.23 Total: 16.21 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 5.14 Total: -0.93 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -2.39 Total: -104.28 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.05 Total: -21.37 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.78 Total: -3.14 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.85 Total: 43.41 kcal Total: -75.66 5.56 -70.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194641038.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.691 kcal (2) G-P(sol) polarization free energy of solvation -75.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds