Wall clock time and date at job start Wed Apr 1 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30277 * 126.28067 * 2 1 4 4 N 1.28668 * 109.38006 * 179.73413 * 3 2 1 5 5 C 1.30272 * 109.37926 * 0.44365 * 4 3 2 6 6 C 1.50701 * 126.28003 * 179.82761 * 5 4 3 7 7 H 1.08996 * 109.47025 * 164.69190 * 6 5 4 8 8 C 1.53009 * 109.46932 * 284.69234 * 6 5 4 9 9 N 1.46901 * 109.47232 * 44.68519 * 6 5 4 10 10 C 1.46904 * 110.99895 * 154.99728 * 9 6 5 11 11 C 1.52998 * 109.47342 * 180.02562 * 10 9 6 12 12 H 1.09002 * 109.46886 * 305.00623 * 11 10 9 13 13 O 1.42902 * 109.47007 * 65.00159 * 11 10 9 14 14 C 1.52993 * 109.47198 * 185.00388 * 11 10 9 15 15 O 1.42907 * 109.47148 * 175.00166 * 14 11 10 16 16 C 1.35669 * 117.00155 * 180.02562 * 15 14 11 17 17 C 1.39316 * 119.81649 * 359.72005 * 16 15 14 18 18 C 1.36442 * 120.18180 * 179.76505 * 17 16 15 19 19 C 1.40832 * 119.81047 * 0.51320 * 18 17 16 20 20 C 1.41216 * 120.17675 * 179.72278 * 19 18 17 21 21 H 1.07996 * 120.00294 * 155.16340 * 20 19 18 22 22 C 1.39893 * 119.99935 * 335.16213 * 20 19 18 23 23 N 1.30878 * 120.00259 * 342.16180 * 22 20 19 24 24 Si 1.86805 * 119.99916 * 162.15940 * 22 20 19 25 25 H 1.48496 * 109.47081 * 94.66022 * 24 22 20 26 26 H 1.48503 * 109.47100 * 214.65761 * 24 22 20 27 27 H 1.48498 * 109.47037 * 334.65861 * 24 22 20 28 28 C 1.40829 * 119.64530 * 359.74163 * 19 18 17 29 29 C 1.36442 * 119.81108 * 0.02562 * 28 19 18 30 30 O 1.34359 * 107.43676 * 359.56460 * 5 4 3 31 31 H 1.09001 * 109.46837 * 269.99431 * 1 2 3 32 32 H 1.08997 * 109.47396 * 29.99787 * 1 2 3 33 33 H 1.09003 * 109.47048 * 149.99935 * 1 2 3 34 34 H 1.08999 * 109.47041 * 180.02562 * 8 6 5 35 35 H 1.08999 * 109.46830 * 299.99683 * 8 6 5 36 36 H 1.08996 * 109.47301 * 60.00125 * 8 6 5 37 37 H 1.00890 * 111.00401 * 278.95580 * 9 6 5 38 38 H 1.09001 * 109.47304 * 300.00694 * 10 9 6 39 39 H 1.09000 * 109.46813 * 60.00495 * 10 9 6 40 40 H 0.96697 * 113.99792 * 60.00409 * 13 11 10 41 41 H 1.08998 * 109.47035 * 294.99811 * 14 11 10 42 42 H 1.09002 * 109.47570 * 55.00370 * 14 11 10 43 43 H 1.07999 * 119.91084 * 0.02562 * 17 16 15 44 44 H 1.08004 * 120.08908 * 180.25399 * 18 17 16 45 45 H 0.97001 * 120.00630 * 179.97438 * 23 22 20 46 46 H 1.07999 * 120.09753 * 179.97438 * 28 19 18 47 47 H 1.07993 * 119.90852 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6762 0.0056 5 6 3.5653 -0.6253 -0.0001 6 6 4.8176 -1.4637 -0.0002 7 1 4.5673 -2.4906 0.2657 8 6 5.4491 -1.4370 -1.3936 9 7 5.7694 -0.9222 0.9791 10 6 6.6933 -1.9642 1.4469 11 6 7.6665 -1.3639 2.4635 12 1 8.1693 -0.5039 2.0211 13 8 6.9456 -0.9486 3.6253 14 6 8.7058 -2.4155 2.8569 15 8 9.6821 -1.8223 3.7157 16 6 10.6821 -2.6252 4.1583 17 6 10.7168 -3.9640 3.7748 18 6 11.7218 -4.7769 4.2117 19 6 12.7198 -4.2616 5.0613 20 6 13.7602 -5.0975 5.5228 21 1 14.7068 -4.6691 5.8173 22 6 13.5647 -6.4806 5.5987 23 7 12.3516 -6.9718 5.5860 24 14 15.0351 -7.6266 5.7180 25 1 15.3065 -7.9367 7.1447 26 1 14.7430 -8.8846 4.9850 27 1 16.2246 -6.9696 5.1193 28 6 12.6743 -2.9084 5.4486 29 6 11.6652 -2.1077 4.9990 30 8 2.3021 -1.0830 -0.0001 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5139 34 1 6.3546 -2.0437 -1.3938 35 1 4.7429 -1.8387 -2.1202 36 1 5.6994 -0.4100 -1.6595 37 1 6.2740 -0.1367 0.5968 38 1 6.1267 -2.7677 1.9175 39 1 7.2519 -2.3616 0.5995 40 1 6.4726 -1.6643 4.0714 41 1 8.2131 -3.2357 3.3790 42 1 9.1945 -2.7968 1.9603 43 1 9.9484 -4.3586 3.1265 44 1 11.7495 -5.8136 3.9102 45 1 12.2160 -7.9309 5.6382 46 1 13.4356 -2.5057 6.1002 47 1 11.6286 -1.0699 5.2952 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612531037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:19 Heat of formation + Delta-G solvation = -29.721202 kcal Electronic energy + Delta-G solvation = -28794.946104 eV Core-core repulsion = 24558.977422 eV Total energy + Delta-G solvation = -4235.968683 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.50146 -39.19776 -38.22827 -36.83355 -36.43329 -35.90158 -33.35878 -33.27064 -31.68454 -29.83014 -29.58578 -28.68309 -28.33866 -25.65893 -24.84716 -24.24029 -22.85547 -22.09206 -21.72656 -20.93633 -20.35987 -17.92141 -17.65492 -17.37212 -17.03157 -16.70265 -16.23969 -16.04843 -15.51912 -15.17704 -15.02932 -14.82269 -14.23733 -14.06481 -13.95671 -13.81922 -13.50036 -13.37793 -13.33483 -12.81683 -12.74794 -12.63509 -12.42596 -12.26417 -12.18170 -12.02946 -12.02554 -11.77466 -11.47140 -11.16963 -11.13869 -11.03280 -10.88016 -10.62523 -10.03428 -9.95437 -9.81561 -9.78001 -9.38797 -9.03365 -8.95620 -7.67863 -7.03135 -6.75302 -4.27264 0.83282 1.80611 2.12506 2.74628 2.94299 3.06278 3.10537 3.19644 3.34638 3.49930 3.93225 4.04497 4.10473 4.25073 4.37878 4.43736 4.59533 4.69661 4.78154 4.81246 4.85394 4.92854 4.95117 5.07881 5.13541 5.14250 5.25808 5.30872 5.37101 5.40292 5.56027 5.59617 5.65174 5.97001 6.07042 6.26734 6.33787 6.69381 6.83712 6.87212 7.04635 7.25667 7.38692 7.53829 7.72916 7.87785 7.98135 8.04562 8.13329 8.42361 8.62830 8.88112 8.97040 10.19653 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025525 B = 0.001551 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.679151 B =18049.653517 C =18499.947656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.155 3.845 3 N -0.289 5.289 4 N -0.270 5.270 5 C 0.178 3.822 6 C 0.183 3.817 7 H 0.110 0.890 8 C -0.181 4.181 9 N -0.667 5.667 10 C 0.032 3.968 11 C 0.115 3.885 12 H 0.106 0.894 13 O -0.539 6.539 14 C 0.039 3.961 15 O -0.317 6.317 16 C -0.010 4.010 17 C -0.175 4.175 18 C -0.134 4.134 19 C 0.087 3.913 20 C -0.463 4.463 21 H 0.077 0.923 22 C 0.075 3.925 23 N -0.801 5.801 24 Si 0.906 3.094 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.261 1.261 28 C -0.195 4.195 29 C -0.111 4.111 30 O -0.227 6.227 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.359 0.641 38 H 0.083 0.917 39 H 0.051 0.949 40 H 0.371 0.629 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.093 0.907 44 H 0.120 0.880 45 H 0.279 0.721 46 H 0.100 0.900 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.299 5.288 -13.843 25.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.056 4.056 3 N -0.137 5.137 4 N -0.116 5.116 5 C -0.035 4.035 6 C 0.071 3.929 7 H 0.128 0.872 8 C -0.240 4.240 9 N -0.300 5.300 10 C -0.097 4.097 11 C 0.055 3.945 12 H 0.124 0.876 13 O -0.343 6.343 14 C -0.038 4.038 15 O -0.233 6.233 16 C -0.054 4.054 17 C -0.194 4.194 18 C -0.154 4.154 19 C 0.085 3.915 20 C -0.493 4.493 21 H 0.095 0.905 22 C -0.141 4.141 23 N -0.427 5.427 24 Si 0.730 3.270 25 H -0.196 1.196 26 H -0.201 1.201 27 H -0.185 1.185 28 C -0.215 4.215 29 C -0.130 4.130 30 O -0.106 6.106 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.180 0.820 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.218 0.782 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.111 0.889 44 H 0.138 0.862 45 H 0.090 0.910 46 H 0.118 0.882 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.254 7.013 -13.395 25.275 hybrid contribution 0.461 -2.835 -0.601 2.934 sum -19.793 4.178 -13.996 24.599 Atomic orbital electron populations 1.20344 0.80240 1.05596 1.05313 1.28020 0.97812 0.79709 1.00011 1.74432 0.96223 1.25637 1.17375 1.74344 1.11790 1.09159 1.16303 1.27835 0.84802 0.91652 0.99165 1.19713 0.84684 0.95690 0.92840 0.87224 1.22524 1.01924 1.04109 0.95439 1.59970 1.20430 1.10015 1.39585 1.22672 0.94325 0.94246 0.98475 1.21818 0.89331 0.97520 0.85799 0.87634 1.86657 1.67906 1.38480 1.41297 1.23088 0.90535 0.95748 0.94470 1.85867 1.35834 1.37780 1.63816 1.18596 0.92220 0.89856 1.04688 1.20585 1.01093 0.93089 1.04586 1.20923 0.95940 0.99490 0.99031 1.17599 0.92615 0.91268 0.90038 1.19471 0.99867 0.91011 1.38962 0.90483 1.25871 0.96583 0.99210 0.92468 1.69838 1.21877 1.14584 1.36413 0.86340 0.82217 0.79347 0.79052 1.19624 1.20148 1.18466 1.20613 1.00120 0.95359 1.05411 1.19628 0.95033 0.98572 0.99793 1.84749 1.17505 1.38499 1.69885 0.88264 0.87564 0.88973 0.90198 0.91235 0.90792 0.82012 0.89856 0.93125 0.78198 0.92731 0.92439 0.88941 0.86202 0.91034 0.88173 0.88441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.21 10.51 36.00 0.38 0.16 16 2 C 0.16 1.43 8.48 -12.94 -0.11 1.32 16 3 N -0.29 -3.58 12.22 32.55 0.40 -3.18 16 4 N -0.27 -3.48 12.22 32.55 0.40 -3.08 16 5 C 0.18 1.87 7.32 -12.94 -0.09 1.77 16 6 C 0.18 1.41 3.13 -68.86 -0.22 1.19 16 7 H 0.11 0.69 7.80 -51.93 -0.41 0.28 16 8 C -0.18 -1.06 9.14 37.16 0.34 -0.72 16 9 N -0.67 -5.98 6.18 -107.95 -0.67 -6.65 16 10 C 0.03 0.26 5.12 -3.82 -0.02 0.25 16 11 C 0.12 1.36 3.43 -26.74 -0.09 1.27 16 12 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 13 O -0.54 -7.43 13.25 -40.08 -0.53 -7.96 16 14 C 0.04 0.57 4.36 37.15 0.16 0.73 16 15 O -0.32 -6.37 10.09 -23.56 -0.24 -6.60 16 16 C -0.01 -0.24 6.71 -38.78 -0.26 -0.50 16 17 C -0.17 -4.01 8.96 -39.83 -0.36 -4.36 16 18 C -0.13 -3.44 8.64 -39.25 -0.34 -3.78 16 19 C 0.09 2.31 5.57 -106.81 -0.60 1.72 16 20 C -0.46 -12.22 9.04 -37.83 -0.34 -12.56 16 21 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 22 C 0.08 1.87 5.13 -17.34 -0.09 1.79 16 23 N -0.80 -20.52 10.97 55.54 0.61 -19.91 16 24 Si 0.91 18.50 29.60 -169.99 -5.03 13.47 16 25 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 26 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 27 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 28 C -0.20 -4.82 9.74 -39.25 -0.38 -5.20 16 29 C -0.11 -2.61 9.92 -39.83 -0.40 -3.00 16 30 O -0.23 -2.25 10.87 5.40 0.06 -2.20 16 31 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.08 0.38 7.45 -51.93 -0.39 0.00 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 37 H 0.36 3.24 8.47 -39.30 -0.33 2.91 16 38 H 0.08 0.63 8.06 -51.93 -0.42 0.21 16 39 H 0.05 0.35 7.44 -51.93 -0.39 -0.04 16 40 H 0.37 3.98 9.04 45.56 0.41 4.39 16 41 H 0.05 0.78 7.64 -51.93 -0.40 0.38 16 42 H 0.06 0.79 7.66 -51.93 -0.40 0.39 16 43 H 0.09 1.85 6.27 -52.49 -0.33 1.52 16 44 H 0.12 3.14 6.18 -52.48 -0.32 2.82 16 45 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 46 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 47 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 399.10 15.07 6.01 6.01 Total: -1.00 -33.41 399.10 -7.29 -40.70 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.90 Total: 9.34 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -2.41 Total: -19.93 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.74 Total: -32.83 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.71 Total: -16.76 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.41 -7.29 -40.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612531037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.981 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds