Wall clock time and date at job start Wed Apr 1 2020 04:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00010 * 2 1 4 4 C 1.50707 * 109.46878 * 269.99925 * 3 2 1 5 5 H 1.08001 * 119.99732 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99690 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99910 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99676 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47341 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.46958 * 119.99973 * 8 6 4 11 11 H 1.48498 * 109.47182 * 239.99761 * 8 6 4 12 12 C 1.34778 * 119.99918 * 179.97438 * 2 1 3 13 13 O 1.21588 * 119.99791 * 179.97438 * 12 2 1 14 14 N 1.34780 * 119.99867 * 0.02562 * 12 2 1 15 15 C 1.40142 * 119.99417 * 185.11113 * 14 12 2 16 16 C 1.38859 * 119.98680 * 213.24415 * 15 14 12 17 17 C 1.38231 * 120.18970 * 179.66894 * 16 15 14 18 18 C 1.38468 * 120.01633 * 0.22908 * 17 16 15 19 19 C 1.39390 * 119.90304 * 0.19039 * 18 17 16 20 20 C 1.38481 * 120.07445 * 359.74012 * 19 18 17 21 21 N 1.40145 * 119.36087 * 179.65888 * 19 18 17 22 22 C 1.35172 * 119.33026 * 48.79421 * 21 19 18 23 23 O 1.21296 * 120.16078 * 183.54144 * 22 21 19 24 24 C 1.50685 * 119.68193 * 3.56320 * 22 21 19 25 25 C 1.52998 * 109.37096 * 45.76171 * 24 22 21 26 26 C 1.52995 * 109.37259 * 165.51553 * 24 22 21 27 27 C 1.52724 * 110.07266 * 285.57968 * 24 22 21 28 28 O 1.36007 * 120.40734 * 180.56751 * 18 17 16 29 29 H 1.09000 * 109.47454 * 270.00157 * 1 2 3 30 30 H 1.09002 * 109.47010 * 30.00023 * 1 2 3 31 31 H 1.09000 * 109.47329 * 150.00121 * 1 2 3 32 32 H 1.08999 * 109.47262 * 29.99741 * 3 2 1 33 33 H 1.08993 * 109.47078 * 150.00016 * 3 2 1 34 34 H 0.97010 * 119.99403 * 180.02562 * 7 6 4 35 35 H 0.96995 * 119.99729 * 5.11383 * 14 12 2 36 36 H 1.08003 * 119.90621 * 359.94307 * 16 15 14 37 37 H 1.07996 * 119.99017 * 180.20645 * 17 16 15 38 38 H 1.08005 * 120.10683 * 180.17455 * 20 19 18 39 39 H 0.97000 * 120.33905 * 228.80477 * 21 19 18 40 40 H 1.09001 * 109.46914 * 41.16782 * 25 24 22 41 41 H 1.08998 * 109.47255 * 161.16597 * 25 24 22 42 42 H 1.09002 * 109.47311 * 281.16925 * 25 24 22 43 43 H 1.09004 * 109.47487 * 59.99924 * 26 24 22 44 44 H 1.08996 * 109.47111 * 179.97438 * 26 24 22 45 45 H 1.09001 * 109.47129 * 299.99818 * 26 24 22 46 46 H 1.08994 * 109.30339 * 164.24236 * 27 24 22 47 47 H 1.09000 * 109.30439 * 283.63066 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.5542 3.6175 -0.6732 8 14 3.4389 3.4162 -3.4340 9 1 2.8618 2.4157 -4.3674 10 1 2.8018 4.7371 -3.6678 11 1 4.9015 3.5240 -3.6670 12 6 2.1389 -1.1672 0.0005 13 8 3.3547 -1.1672 0.0001 14 7 1.4649 -2.3344 0.0005 15 6 2.1615 -3.5456 0.1092 16 6 1.6882 -4.6789 -0.5387 17 6 2.3757 -5.8741 -0.4400 18 6 3.5372 -5.9452 0.3104 19 6 4.0096 -4.8110 0.9689 20 6 3.3216 -3.6134 0.8687 21 7 5.1825 -4.8976 1.7311 22 6 6.2800 -5.4755 1.1940 23 8 7.2831 -5.6162 1.8614 24 6 6.2518 -5.9436 -0.2380 25 6 5.6270 -4.8566 -1.1150 26 6 7.6808 -6.2177 -0.7106 27 6 5.4278 -7.2242 -0.3547 28 8 4.2261 -7.1141 0.4036 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5138 34 1 4.0311 4.4435 -0.8505 35 1 0.4979 -2.3360 -0.0747 36 1 0.7828 -4.6254 -1.1251 37 1 2.0065 -6.7528 -0.9479 38 1 3.6887 -2.7336 1.3764 39 1 5.2064 -4.5464 2.6350 40 1 5.9948 -3.8800 -0.8003 41 1 5.8990 -5.0290 -2.1563 42 1 4.5422 -4.8864 -1.0130 43 1 8.1291 -6.9889 -0.0841 44 1 7.6622 -6.5569 -1.7463 45 1 8.2693 -5.3031 -0.6380 46 1 5.1789 -7.3984 -1.4014 47 1 6.0134 -8.0646 0.0180 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880889098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:16 Heat of formation + Delta-G solvation = -46.222874 kcal Electronic energy + Delta-G solvation = -31576.917815 eV Core-core repulsion = 27340.233567 eV Total energy + Delta-G solvation = -4236.684249 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.95888 -40.15725 -38.84966 -37.71282 -35.56425 -35.06310 -34.88582 -33.81570 -32.56324 -30.07870 -29.15397 -27.78561 -27.34685 -26.44137 -25.72473 -24.15751 -23.41612 -22.93456 -21.66304 -19.95404 -19.59491 -18.46040 -17.63707 -17.27930 -16.85155 -16.62863 -16.36298 -16.00005 -15.86048 -15.18364 -14.88499 -14.78773 -14.53875 -14.15644 -14.08721 -13.75917 -13.51190 -13.18923 -12.94723 -12.93441 -12.76932 -12.61202 -12.36767 -12.26562 -12.22478 -11.99549 -11.89921 -11.28523 -11.25166 -11.12169 -10.94502 -10.74489 -10.66115 -10.23057 -10.12764 -9.96768 -9.82269 -9.66659 -9.42594 -8.53624 -8.49617 -7.97897 -7.67132 -6.10401 -4.15369 0.91909 1.16050 2.36870 2.84607 3.05384 3.19658 3.25822 3.34033 3.37833 3.61172 3.85862 4.07753 4.30979 4.36429 4.43832 4.44312 4.72863 4.83371 5.00875 5.11294 5.15657 5.23968 5.27170 5.32074 5.39365 5.44344 5.58219 5.59557 5.65306 5.73131 5.73900 5.76248 5.96940 6.01859 6.10385 6.11898 6.18680 6.28195 6.61605 6.68402 6.86903 6.94215 7.24228 7.33759 7.38177 7.54328 7.86588 7.93341 8.15229 8.42664 8.84797 9.08548 9.50248 10.97544 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013112 B = 0.003035 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.977761 B = 9224.859124 C =10216.192813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.610 5.610 3 C 0.259 3.741 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.695 3.305 13 O -0.565 6.565 14 N -0.695 5.695 15 C 0.204 3.796 16 C -0.151 4.151 17 C -0.091 4.091 18 C 0.050 3.950 19 C 0.141 3.859 20 C -0.127 4.127 21 N -0.666 5.666 22 C 0.540 3.460 23 O -0.526 6.526 24 C -0.120 4.120 25 C -0.167 4.167 26 C -0.127 4.127 27 C 0.078 3.922 28 O -0.322 6.322 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.405 0.595 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.150 0.850 39 H 0.413 0.587 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.740 -20.891 0.436 21.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.344 5.344 3 C 0.140 3.860 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.397 3.603 13 O -0.441 6.441 14 N -0.345 5.345 15 C 0.106 3.894 16 C -0.173 4.173 17 C -0.111 4.111 18 C 0.004 3.996 19 C 0.046 3.954 20 C -0.150 4.150 21 N -0.314 5.314 22 C 0.327 3.673 23 O -0.400 6.400 24 C -0.123 4.123 25 C -0.224 4.224 26 C -0.185 4.185 27 C 0.003 3.997 28 O -0.239 6.239 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.242 0.758 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.168 0.832 39 H 0.252 0.748 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.217 -20.850 0.799 21.112 hybrid contribution -0.319 0.922 -0.828 1.280 sum -3.536 -19.928 -0.030 20.240 Atomic orbital electron populations 1.21618 0.81524 1.02463 1.00556 1.47535 1.05836 1.06316 1.74762 1.19283 0.92370 0.76744 0.97609 1.21471 1.36637 1.06307 0.92305 0.92411 1.24927 0.95284 0.96368 0.97467 1.69939 1.38296 1.14346 1.30680 0.86442 0.78143 0.78304 0.84520 1.19837 1.20924 1.20846 1.15944 0.85613 0.80070 0.78657 1.90922 1.11207 1.85436 1.56491 1.43101 1.10164 1.03591 1.77602 1.17335 0.92854 0.85179 0.94008 1.20788 1.02812 0.91708 1.02000 1.20820 0.94926 0.97926 0.97415 1.18417 0.94433 0.84806 1.01986 1.17799 0.88357 0.92697 0.96525 1.20997 0.96854 0.96442 1.00660 1.43536 1.09918 1.60469 1.17482 1.20517 0.81903 0.76004 0.88829 1.90727 1.31654 1.54806 1.62861 1.21469 0.99871 0.98073 0.92909 1.22469 1.02916 0.97748 0.99275 1.21660 0.92480 1.03309 1.01021 1.22930 0.83826 0.96018 0.96937 1.86066 1.36875 1.32967 1.67963 0.93461 0.90168 0.93119 0.94654 0.93640 0.92696 0.75779 0.84827 0.84407 0.83193 0.74800 0.91157 0.91166 0.89917 0.91330 0.91395 0.91400 0.91047 0.87738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 10.25 59.85 0.61 1.77 16 2 N -0.61 -12.06 2.86 -188.74 -0.54 -12.60 16 3 C 0.26 6.48 5.16 -5.19 -0.03 6.45 16 4 C -0.53 -14.51 9.39 -34.44 -0.32 -14.84 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.70 13.59 8.02 -86.91 -0.70 12.89 16 13 O -0.56 -13.37 13.61 5.29 0.07 -13.30 16 14 N -0.69 -9.81 5.23 -14.18 -0.07 -9.88 16 15 C 0.20 2.72 6.28 -83.61 -0.53 2.20 16 16 C -0.15 -1.56 9.95 -39.35 -0.39 -1.95 16 17 C -0.09 -0.91 9.54 -39.50 -0.38 -1.28 16 18 C 0.05 0.59 4.02 -39.07 -0.16 0.43 16 19 C 0.14 1.86 3.91 -83.54 -0.33 1.53 16 20 C -0.13 -1.85 8.37 -39.27 -0.33 -2.17 16 21 N -0.67 -8.94 5.32 -9.69 -0.05 -9.00 16 22 C 0.54 7.72 6.41 -10.81 -0.07 7.65 16 23 O -0.53 -8.85 16.84 5.54 0.09 -8.76 16 24 C -0.12 -1.38 0.73 -155.81 -0.11 -1.49 16 25 C -0.17 -2.06 7.48 37.16 0.28 -1.78 16 26 C -0.13 -1.27 7.69 37.15 0.29 -0.98 16 27 C 0.08 0.75 5.85 37.02 0.22 0.97 16 28 O -0.32 -3.77 9.91 -19.76 -0.20 -3.97 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 31 H 0.05 0.54 6.29 -51.93 -0.33 0.21 16 32 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 35 H 0.40 4.30 6.51 -40.82 -0.27 4.04 16 36 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 37 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.15 2.56 6.42 -52.48 -0.34 2.22 16 39 H 0.41 5.05 8.94 -40.82 -0.36 4.68 16 40 H 0.07 1.03 7.99 -51.93 -0.41 0.61 16 41 H 0.07 0.73 8.00 -51.93 -0.42 0.32 16 42 H 0.08 1.06 3.60 -51.93 -0.19 0.88 16 43 H 0.07 0.68 7.94 -51.93 -0.41 0.26 16 44 H 0.07 0.52 8.13 -51.93 -0.42 0.09 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.07 0.55 8.03 -51.93 -0.42 0.13 16 47 H 0.10 0.87 8.02 -51.93 -0.42 0.45 16 LS Contribution 378.38 15.07 5.70 5.70 Total: -1.00 -34.66 378.38 -7.76 -42.41 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.44 Total: 7.18 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: -2.04 Total: 11.03 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.07 Total: -56.73 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.03 Total: -26.03 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.66 -7.76 -42.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880889098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.808 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds