Wall clock time and date at job start Wed Apr 1 2020 04:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00010 * 2 1 4 4 C 1.50707 * 109.46878 * 269.99925 * 3 2 1 5 5 H 1.08001 * 119.99732 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99690 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99910 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99676 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47341 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.46958 * 119.99973 * 8 6 4 11 11 H 1.48498 * 109.47182 * 239.99761 * 8 6 4 12 12 C 1.34778 * 119.99918 * 179.97438 * 2 1 3 13 13 O 1.21588 * 119.99791 * 179.97438 * 12 2 1 14 14 N 1.34780 * 119.99867 * 0.02562 * 12 2 1 15 15 C 1.40142 * 119.99417 * 185.11113 * 14 12 2 16 16 C 1.38859 * 119.98680 * 213.24415 * 15 14 12 17 17 C 1.38231 * 120.18970 * 179.66894 * 16 15 14 18 18 C 1.38468 * 120.01633 * 0.22908 * 17 16 15 19 19 C 1.39390 * 119.90304 * 0.19039 * 18 17 16 20 20 C 1.38481 * 120.07445 * 359.74012 * 19 18 17 21 21 N 1.40145 * 119.36087 * 179.65888 * 19 18 17 22 22 C 1.35172 * 119.33026 * 48.79421 * 21 19 18 23 23 O 1.21296 * 120.16078 * 183.54144 * 22 21 19 24 24 C 1.50685 * 119.68193 * 3.56320 * 22 21 19 25 25 C 1.52998 * 109.37096 * 45.76171 * 24 22 21 26 26 C 1.52995 * 109.37259 * 165.51553 * 24 22 21 27 27 C 1.52724 * 110.07266 * 285.57968 * 24 22 21 28 28 O 1.36007 * 120.40734 * 180.56751 * 18 17 16 29 29 H 1.09000 * 109.47454 * 270.00157 * 1 2 3 30 30 H 1.09002 * 109.47010 * 30.00023 * 1 2 3 31 31 H 1.09000 * 109.47329 * 150.00121 * 1 2 3 32 32 H 1.08999 * 109.47262 * 29.99741 * 3 2 1 33 33 H 1.08993 * 109.47078 * 150.00016 * 3 2 1 34 34 H 0.97010 * 119.99403 * 180.02562 * 7 6 4 35 35 H 0.96995 * 119.99729 * 5.11383 * 14 12 2 36 36 H 1.08003 * 119.90621 * 359.94307 * 16 15 14 37 37 H 1.07996 * 119.99017 * 180.20645 * 17 16 15 38 38 H 1.08005 * 120.10683 * 180.17455 * 20 19 18 39 39 H 0.97000 * 120.33905 * 228.80477 * 21 19 18 40 40 H 1.09001 * 109.46914 * 41.16782 * 25 24 22 41 41 H 1.08998 * 109.47255 * 161.16597 * 25 24 22 42 42 H 1.09002 * 109.47311 * 281.16925 * 25 24 22 43 43 H 1.09004 * 109.47487 * 59.99924 * 26 24 22 44 44 H 1.08996 * 109.47111 * 179.97438 * 26 24 22 45 45 H 1.09001 * 109.47129 * 299.99818 * 26 24 22 46 46 H 1.08994 * 109.30339 * 164.24236 * 27 24 22 47 47 H 1.09000 * 109.30439 * 283.63066 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.5542 3.6175 -0.6732 8 14 3.4389 3.4162 -3.4340 9 1 2.8618 2.4157 -4.3674 10 1 2.8018 4.7371 -3.6678 11 1 4.9015 3.5240 -3.6670 12 6 2.1389 -1.1672 0.0005 13 8 3.3547 -1.1672 0.0001 14 7 1.4649 -2.3344 0.0005 15 6 2.1615 -3.5456 0.1092 16 6 1.6882 -4.6789 -0.5387 17 6 2.3757 -5.8741 -0.4400 18 6 3.5372 -5.9452 0.3104 19 6 4.0096 -4.8110 0.9689 20 6 3.3216 -3.6134 0.8687 21 7 5.1825 -4.8976 1.7311 22 6 6.2800 -5.4755 1.1940 23 8 7.2831 -5.6162 1.8614 24 6 6.2518 -5.9436 -0.2380 25 6 5.6270 -4.8566 -1.1150 26 6 7.6808 -6.2177 -0.7106 27 6 5.4278 -7.2242 -0.3547 28 8 4.2261 -7.1141 0.4036 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5138 34 1 4.0311 4.4435 -0.8505 35 1 0.4979 -2.3360 -0.0747 36 1 0.7828 -4.6254 -1.1251 37 1 2.0065 -6.7528 -0.9479 38 1 3.6887 -2.7336 1.3764 39 1 5.2064 -4.5464 2.6350 40 1 5.9948 -3.8800 -0.8003 41 1 5.8990 -5.0290 -2.1563 42 1 4.5422 -4.8864 -1.0130 43 1 8.1291 -6.9889 -0.0841 44 1 7.6622 -6.5569 -1.7463 45 1 8.2693 -5.3031 -0.6380 46 1 5.1789 -7.3984 -1.4014 47 1 6.0134 -8.0646 0.0180 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880889098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:15 Heat of formation + Delta-G solvation = -71.312006 kcal Electronic energy + Delta-G solvation = -31578.005762 eV Core-core repulsion = 27340.233567 eV Total energy + Delta-G solvation = -4237.772195 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.94060 -41.50080 -39.98094 -38.75590 -36.81718 -36.47967 -35.96134 -35.12697 -34.44055 -31.11493 -30.36071 -29.38277 -28.24993 -27.50318 -27.00183 -25.31006 -24.91935 -24.10246 -22.79034 -21.09096 -20.82659 -19.63620 -18.71592 -18.66427 -18.51322 -17.91136 -17.41408 -17.15702 -16.89039 -16.58200 -16.47897 -15.88237 -15.71904 -15.58650 -15.18408 -14.89227 -14.71819 -14.44229 -14.22316 -13.94308 -13.85181 -13.70313 -13.66014 -13.47573 -13.33625 -13.13095 -13.06874 -12.89162 -12.79153 -12.54750 -12.21648 -12.20158 -11.98628 -11.81739 -11.68705 -11.26770 -11.03376 -10.90045 -10.80225 -10.64760 -9.63120 -9.45716 -8.82109 -8.22023 -6.36787 -0.04299 0.21111 1.28463 1.36465 1.39090 1.50025 1.64535 1.94541 2.06572 2.37986 2.46320 2.82338 3.00917 3.08115 3.15966 3.50755 3.58242 3.81410 3.94082 4.17186 4.25177 4.26914 4.33114 4.44501 4.46357 4.60480 4.65365 4.66602 4.70682 4.78267 4.82028 4.86786 4.88408 4.97710 5.10223 5.14421 5.18461 5.22154 5.27878 5.34462 5.54091 5.56528 5.77397 5.78280 5.91205 6.05186 6.07956 6.42850 6.72583 6.83871 7.04016 7.30610 7.61337 8.84497 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013112 B = 0.003035 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.977761 B = 9224.859124 C =10216.192813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.619 5.619 3 C 0.276 3.724 4 C -0.540 4.540 5 H 0.055 0.945 6 C 0.008 3.992 7 N -0.929 5.929 8 Si 0.966 3.034 9 H -0.265 1.265 10 H -0.269 1.269 11 H -0.285 1.285 12 C 0.692 3.308 13 O -0.618 6.618 14 N -0.672 5.672 15 C 0.179 3.821 16 C -0.126 4.126 17 C -0.078 4.078 18 C 0.054 3.946 19 C 0.128 3.872 20 C -0.143 4.143 21 N -0.669 5.669 22 C 0.528 3.472 23 O -0.562 6.562 24 C -0.117 4.117 25 C -0.162 4.162 26 C -0.125 4.125 27 C 0.077 3.923 28 O -0.330 6.330 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.029 0.971 33 H -0.002 1.002 34 H 0.266 0.734 35 H 0.424 0.576 36 H 0.173 0.827 37 H 0.178 0.822 38 H 0.111 0.889 39 H 0.411 0.589 40 H 0.033 0.967 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.100 0.900 45 H 0.047 0.953 46 H 0.104 0.896 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.216 -23.819 -2.438 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.353 5.353 3 C 0.154 3.846 4 C -0.579 4.579 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.569 5.569 8 Si 0.791 3.209 9 H -0.189 1.189 10 H -0.194 1.194 11 H -0.211 1.211 12 C 0.393 3.607 13 O -0.497 6.497 14 N -0.323 5.323 15 C 0.082 3.918 16 C -0.147 4.147 17 C -0.097 4.097 18 C 0.008 3.992 19 C 0.033 3.967 20 C -0.166 4.166 21 N -0.316 5.316 22 C 0.318 3.682 23 O -0.440 6.440 24 C -0.120 4.120 25 C -0.218 4.218 26 C -0.182 4.182 27 C 0.003 3.997 28 O -0.247 6.247 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.047 0.953 33 H 0.016 0.984 34 H 0.075 0.925 35 H 0.265 0.735 36 H 0.191 0.809 37 H 0.195 0.805 38 H 0.129 0.871 39 H 0.249 0.751 40 H 0.052 0.948 41 H 0.112 0.888 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.119 0.881 45 H 0.066 0.934 46 H 0.122 0.878 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.794 -23.828 -2.077 24.610 hybrid contribution 0.445 1.759 0.150 1.821 sum -5.349 -22.068 -1.928 22.789 Atomic orbital electron populations 1.21931 0.77754 1.04187 1.02698 1.47364 1.08073 1.04818 1.75054 1.18694 0.90875 0.79046 0.96001 1.21750 1.36609 1.06373 0.93130 0.92718 1.25834 0.94980 0.96518 1.01799 1.70059 1.39034 1.14849 1.32934 0.85387 0.77719 0.78464 0.79349 1.18946 1.19421 1.21117 1.16119 0.85102 0.81218 0.78223 1.90894 1.13820 1.86420 1.58614 1.42653 1.10848 1.02136 1.76707 1.17573 0.93074 0.85729 0.95405 1.21143 1.03259 0.90104 1.00195 1.21224 0.93387 0.98968 0.96146 1.18599 0.95017 0.84165 1.01402 1.17874 0.88212 0.93130 0.97446 1.20764 0.98248 0.95748 1.01870 1.43650 1.10378 1.59987 1.17634 1.21225 0.81378 0.75547 0.90098 1.90694 1.32762 1.56531 1.64031 1.21551 1.01274 0.98811 0.90365 1.22412 1.02593 0.96203 1.00634 1.21678 0.91142 1.02445 1.02941 1.23165 0.82852 0.95006 0.98720 1.86040 1.37473 1.32379 1.68799 0.91075 0.90860 0.88990 0.95325 0.98392 0.92474 0.73468 0.80922 0.80493 0.87099 0.75050 0.94807 0.88821 0.90216 0.91262 0.88147 0.93423 0.87760 0.86096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.01 10.25 127.77 1.31 3.32 16 2 N -0.62 -24.89 2.86 -869.30 -2.48 -27.38 16 3 C 0.28 14.47 5.16 85.63 0.44 14.92 16 4 C -0.54 -30.42 9.39 25.60 0.24 -30.18 16 5 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.43 5.46 84.65 0.46 0.89 16 7 N -0.93 -55.71 13.29 21.45 0.28 -55.42 16 8 Si 0.97 44.35 29.54 68.60 2.03 46.37 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 12 C 0.69 27.71 8.02 179.05 1.44 29.14 16 13 O -0.62 -31.25 13.61 -3.99 -0.05 -31.30 16 14 N -0.67 -18.14 5.23 -317.05 -1.66 -19.80 16 15 C 0.18 4.55 6.28 38.10 0.24 4.79 16 16 C -0.13 -2.06 9.95 22.42 0.22 -1.84 16 17 C -0.08 -1.20 9.54 22.32 0.21 -0.98 16 18 C 0.05 1.16 4.02 22.60 0.09 1.25 16 19 C 0.13 3.42 3.91 38.15 0.15 3.57 16 20 C -0.14 -4.37 8.37 22.47 0.19 -4.18 16 21 N -0.67 -19.23 5.32 -302.74 -1.61 -20.84 16 22 C 0.53 15.74 6.41 87.59 0.56 16.30 16 23 O -0.56 -20.00 16.84 -3.08 -0.05 -20.06 16 24 C -0.12 -2.58 0.73 -53.03 -0.04 -2.62 16 25 C -0.16 -3.89 7.48 71.98 0.54 -3.35 16 26 C -0.12 -2.35 7.69 71.98 0.55 -1.80 16 27 C 0.08 1.25 5.85 71.89 0.42 1.67 16 28 O -0.33 -6.76 9.91 -93.62 -0.93 -7.69 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 31 H 0.09 1.63 6.29 -2.39 -0.02 1.61 16 32 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 33 H 0.00 -0.13 7.42 -2.39 -0.02 -0.14 16 34 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 35 H 0.42 7.69 6.51 -92.71 -0.60 7.09 16 36 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.18 1.45 8.06 -2.91 -0.02 1.42 16 38 H 0.11 4.25 6.42 -2.91 -0.02 4.23 16 39 H 0.41 11.31 8.94 -92.71 -0.83 10.48 16 40 H 0.03 1.04 7.99 -2.39 -0.02 1.02 16 41 H 0.09 1.76 8.00 -2.39 -0.02 1.74 16 42 H 0.08 1.95 3.60 -2.39 -0.01 1.94 16 43 H 0.07 1.30 7.94 -2.38 -0.02 1.28 16 44 H 0.10 1.22 8.13 -2.39 -0.02 1.20 16 45 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.10 1.08 8.03 -2.39 -0.02 1.06 16 47 H 0.12 1.60 8.02 -2.39 -0.02 1.58 16 Total: -1.00 -82.36 378.38 2.15 -80.21 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: -0.40 Total: 24.99 kcal Atomic # 6 Polarization: 23.88 SS G_CDS: 7.03 Total: 30.91 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -5.47 Total: -123.44 kcal Atomic # 8 Polarization: -58.01 SS G_CDS: -1.03 Total: -59.05 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -82.36 2.15 -80.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880889098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.895 kcal (2) G-P(sol) polarization free energy of solvation -82.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds