Wall clock time and date at job start Wed Apr 1 2020 05:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29934 * 125.37656 * 2 1 4 4 C 1.36061 * 108.47750 * 180.18071 * 3 2 1 5 5 C 1.47420 * 126.45217 * 179.88509 * 4 3 2 6 6 O 1.21610 * 120.00402 * 179.41595 * 5 4 3 7 7 N 1.34784 * 119.99760 * 359.68946 * 5 4 3 8 8 C 1.47137 * 125.60653 * 359.41923 * 7 5 4 9 9 C 1.54591 * 107.32056 * 178.91016 * 8 7 5 10 10 C 1.53703 * 102.87180 * 339.50001 * 9 8 7 11 11 C 1.53202 * 111.54870 * 153.75591 * 10 9 8 12 12 C 1.54805 * 101.39074 * 145.81872 * 11 10 9 13 13 N 1.46933 * 105.53897 * 335.83571 * 12 11 10 14 14 C 1.46501 * 124.37469 * 196.72222 * 13 12 11 15 15 C 1.52997 * 109.47190 * 269.99916 * 14 13 12 16 16 C 1.50696 * 109.47165 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00020 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00132 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00131 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00160 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46895 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47164 * 120.00062 * 20 18 16 23 23 H 1.48501 * 109.46834 * 240.00264 * 20 18 16 24 24 C 1.34889 * 111.24422 * 16.74196 * 13 12 11 25 25 O 1.21281 * 125.21914 * 178.73428 * 24 13 12 26 26 C 1.47696 * 125.60873 * 179.72423 * 7 5 4 27 27 C 1.36092 * 107.10499 * 359.62649 * 4 3 2 28 28 O 1.34047 * 125.38081 * 179.77113 * 2 1 3 29 29 H 1.09008 * 109.47112 * 180.25906 * 1 2 3 30 30 H 1.09001 * 109.47230 * 300.25671 * 1 2 3 31 31 H 1.08996 * 109.47702 * 60.26164 * 1 2 3 32 32 H 1.09001 * 109.87109 * 298.49294 * 8 7 5 33 33 H 1.08994 * 109.87312 * 59.61763 * 8 7 5 34 34 H 1.09008 * 110.90179 * 221.05958 * 9 8 7 35 35 H 1.08997 * 110.67559 * 97.84097 * 9 8 7 36 36 H 1.09001 * 111.04220 * 263.84431 * 11 10 9 37 37 H 1.08995 * 111.04322 * 27.79155 * 11 10 9 38 38 H 1.08995 * 110.23164 * 216.81695 * 12 11 10 39 39 H 1.08997 * 110.30377 * 94.88773 * 12 11 10 40 40 H 1.09006 * 109.46956 * 30.00136 * 14 13 12 41 41 H 1.08998 * 109.46793 * 149.99755 * 14 13 12 42 42 H 1.08998 * 109.46925 * 300.00435 * 15 14 13 43 43 H 1.09004 * 109.47095 * 59.99844 * 15 14 13 44 44 H 0.96995 * 120.00502 * 179.97438 * 19 18 16 45 45 H 1.09006 * 110.39555 * 321.41996 * 26 7 5 46 46 H 1.09003 * 110.39347 * 83.69046 * 26 7 5 47 47 H 1.08001 * 126.53138 * 180.22667 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0594 0.0000 4 6 3.5611 0.6639 -0.0041 5 6 4.7438 1.5439 -0.0079 6 8 5.8604 1.0620 -0.0006 7 7 4.5877 2.8827 -0.0138 8 6 3.3003 3.5949 -0.0292 9 6 3.6116 5.1089 -0.0029 10 6 5.0449 5.1542 0.5503 11 6 5.7888 6.4096 0.0836 12 6 6.6766 6.7143 1.3146 13 7 5.9912 6.0949 2.4572 14 6 6.2686 6.4136 3.8600 15 6 7.3661 5.4866 4.3862 16 6 7.6510 5.8140 5.8293 17 1 7.1042 6.6045 6.3218 18 6 8.6097 5.1043 6.5210 19 7 9.2759 4.1420 5.9211 20 14 8.9623 5.5097 8.3101 21 1 8.0846 6.6250 8.7471 22 1 8.6989 4.3136 9.1498 23 1 10.3840 5.9131 8.4552 24 6 5.0740 5.1948 2.0476 25 8 4.3796 4.5213 2.7791 26 6 5.6808 3.8759 -0.0124 27 6 3.5660 -0.6970 0.0019 28 8 2.2831 -1.0929 0.0044 29 1 -0.3634 -1.0277 0.0046 30 1 -0.3634 0.5178 0.8877 31 1 -0.3634 0.5097 -0.8923 32 1 2.7486 3.3434 -0.9350 33 1 2.7162 3.3235 0.8500 34 1 2.9250 5.6357 0.6599 35 1 3.5724 5.5274 -1.0086 36 1 6.3978 6.1994 -0.7957 37 1 5.0942 7.2269 -0.1099 38 1 6.7589 7.7910 1.4627 39 1 7.6659 6.2753 1.1854 40 1 6.5991 7.4494 3.9388 41 1 5.3625 6.2755 4.4499 42 1 7.0356 4.4509 4.3073 43 1 8.2722 5.6247 3.7962 44 1 9.9505 3.6430 6.4076 45 1 6.4960 3.5428 0.6300 46 1 6.0423 4.0443 -1.0268 47 1 4.4361 -1.3367 0.0043 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268891287.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:27 Heat of formation + Delta-G solvation = -37.611538 kcal Electronic energy + Delta-G solvation = -31007.535955 eV Core-core repulsion = 26771.225122 eV Total energy + Delta-G solvation = -4236.310833 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.62094 -41.08985 -39.19513 -36.95405 -36.00229 -35.11756 -33.82010 -32.57786 -32.28572 -30.49032 -29.14539 -28.30628 -27.92819 -25.71306 -24.88181 -23.33103 -22.61865 -21.91069 -21.71507 -20.38853 -19.79818 -18.69457 -17.77918 -17.14623 -16.76988 -16.57251 -16.23019 -15.62913 -15.55820 -15.44961 -14.85000 -14.40400 -14.34284 -14.10829 -13.99487 -13.75047 -13.49213 -13.18626 -13.09682 -12.91700 -12.78397 -12.68846 -12.65179 -12.35081 -12.24807 -11.88513 -11.49729 -11.36902 -11.31173 -11.13899 -10.95094 -10.90450 -10.69961 -10.62666 -10.19999 -9.98338 -9.84172 -9.32440 -9.21995 -9.06839 -8.60447 -8.35653 -8.00902 -5.99795 -4.03782 0.94455 1.83523 2.35456 2.82236 2.94648 3.25704 3.31968 3.38730 3.42445 3.53026 3.63157 4.21567 4.30730 4.38269 4.47129 4.57233 4.61909 4.79559 4.96188 4.97506 5.01327 5.17436 5.19457 5.27046 5.36044 5.39510 5.41624 5.47647 5.51743 5.63340 5.67547 5.71008 5.78696 5.87287 5.88997 5.99173 6.05366 6.11336 6.29962 6.45822 6.81998 7.00446 7.25098 7.45317 7.50769 7.68590 7.85955 7.99689 8.07376 8.35333 8.67037 9.03226 9.60270 11.11535 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011383 B = 0.002842 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.244377 B = 9849.567347 C =11076.723097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.191 3.809 3 N -0.455 5.455 4 C -0.061 4.061 5 C 0.616 3.384 6 O -0.535 6.535 7 N -0.597 5.597 8 C 0.119 3.881 9 C -0.108 4.108 10 C -0.115 4.115 11 C -0.116 4.116 12 C 0.100 3.900 13 N -0.612 5.612 14 C 0.129 3.871 15 C 0.011 3.989 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.058 3.942 19 N -0.891 5.891 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.528 3.472 25 O -0.519 6.519 26 C 0.134 3.866 27 C 0.011 3.989 28 O -0.198 6.198 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.020 0.980 43 H 0.017 0.983 44 H 0.261 0.739 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.464 -2.141 -20.062 26.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.018 4.018 3 N -0.186 5.186 4 C -0.181 4.181 5 C 0.404 3.596 6 O -0.413 6.413 7 N -0.329 5.329 8 C -0.004 4.004 9 C -0.147 4.147 10 C -0.119 4.119 11 C -0.154 4.154 12 C -0.024 4.024 13 N -0.346 5.346 14 C 0.009 3.991 15 C -0.027 4.027 16 C -0.561 4.561 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.530 5.530 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C 0.313 3.687 25 O -0.394 6.394 26 C 0.011 3.989 27 C -0.063 4.063 28 O -0.084 6.084 29 H 0.107 0.893 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.038 0.962 43 H 0.035 0.965 44 H 0.070 0.930 45 H 0.105 0.895 46 H 0.101 0.899 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -16.319 -2.325 -19.525 25.553 hybrid contribution 0.797 -0.500 1.124 1.466 sum -15.522 -2.824 -18.400 24.238 Atomic orbital electron populations 1.20292 0.80921 1.04862 1.05317 1.26388 0.96702 0.78394 1.00282 1.70867 1.00689 1.29553 1.17508 1.21642 0.91990 0.92840 1.11614 1.16299 0.86267 0.80312 0.76716 1.90851 1.24371 1.74532 1.51510 1.48131 1.08751 1.04319 1.71663 1.22090 0.85036 0.90196 1.03070 1.22446 0.94335 0.96230 1.01642 1.21601 0.97970 0.96627 0.95696 1.22471 0.98764 0.95979 0.98232 1.22131 0.96329 0.98891 0.85017 1.48684 1.37512 1.40740 1.07615 1.21802 1.00749 0.99693 0.76814 1.19409 0.92508 0.95008 0.95747 1.21110 1.20466 1.18374 0.96161 0.92452 1.25016 0.95997 0.94953 0.98361 1.69989 1.24472 1.21838 1.36673 0.86501 0.78001 0.78310 0.84979 1.19671 1.20955 1.20982 1.19878 0.80140 0.79680 0.88961 1.90708 1.44407 1.43564 1.60711 1.21935 0.90415 0.85344 1.01174 1.25258 0.84783 0.95624 1.00591 1.84387 1.16717 1.37978 1.69324 0.89278 0.88213 0.88361 0.90867 0.89894 0.89498 0.89724 0.88937 0.89408 0.90385 0.90887 0.91578 0.91217 0.96164 0.96454 0.92965 0.89529 0.89925 0.75259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.28 10.51 36.00 0.38 0.09 16 2 C 0.19 1.92 8.30 -13.08 -0.11 1.81 16 3 N -0.46 -5.83 8.83 -7.66 -0.07 -5.90 16 4 C -0.06 -0.87 6.83 -83.02 -0.57 -1.44 16 5 C 0.62 10.36 7.85 -12.52 -0.10 10.26 16 6 O -0.54 -10.37 17.17 5.27 0.09 -10.28 16 7 N -0.60 -9.16 3.34 -172.20 -0.57 -9.73 16 8 C 0.12 1.53 5.30 -2.86 -0.02 1.51 16 9 C -0.11 -1.17 5.79 -25.53 -0.15 -1.32 16 10 C -0.11 -1.51 0.68 -155.38 -0.10 -1.62 16 11 C -0.12 -1.12 6.26 -25.68 -0.16 -1.28 16 12 C 0.10 1.30 7.37 -2.85 -0.02 1.28 16 13 N -0.61 -11.14 2.95 -172.56 -0.51 -11.65 16 14 C 0.13 2.78 5.88 -4.04 -0.02 2.75 16 15 C 0.01 0.30 5.30 -27.89 -0.15 0.15 16 16 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 17 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -27.69 13.29 55.43 0.74 -26.96 16 20 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 C 0.53 9.87 6.77 -11.36 -0.08 9.79 16 25 O -0.52 -11.95 17.29 5.56 0.10 -11.85 16 26 C 0.13 1.91 5.89 -3.15 -0.02 1.89 16 27 C 0.01 0.13 11.95 29.96 0.36 0.49 16 28 O -0.20 -2.09 10.73 6.51 0.07 -2.02 16 29 H 0.09 0.28 8.14 -51.92 -0.42 -0.14 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.82 7.78 -51.93 -0.40 0.42 16 33 H 0.08 1.26 7.60 -51.93 -0.39 0.86 16 34 H 0.09 0.96 8.00 -51.92 -0.42 0.55 16 35 H 0.08 0.65 8.04 -51.93 -0.42 0.23 16 36 H 0.09 0.67 7.63 -51.93 -0.40 0.28 16 37 H 0.09 0.67 7.96 -51.93 -0.41 0.26 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.07 1.58 7.96 -51.93 -0.41 1.16 16 42 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 45 H 0.09 1.51 7.94 -51.93 -0.41 1.10 16 46 H 0.08 0.93 7.75 -51.93 -0.40 0.53 16 47 H 0.23 2.03 8.06 -52.49 -0.42 1.60 16 LS Contribution 393.59 15.07 5.93 5.93 Total: -1.00 -39.19 393.59 -7.43 -46.62 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -7.02 Total: -1.85 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: -1.17 Total: 10.58 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -0.42 Total: -54.24 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: 0.26 Total: -24.15 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.19 -7.43 -46.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268891287.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.010 kcal (2) G-P(sol) polarization free energy of solvation -39.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds