Wall clock time and date at job start Wed Apr 1 2020 05:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29934 * 125.37656 * 2 1 4 4 C 1.36061 * 108.47750 * 180.18071 * 3 2 1 5 5 C 1.47420 * 126.45217 * 179.88509 * 4 3 2 6 6 O 1.21610 * 120.00402 * 179.41595 * 5 4 3 7 7 N 1.34784 * 119.99760 * 359.68946 * 5 4 3 8 8 C 1.47137 * 125.60653 * 359.41923 * 7 5 4 9 9 C 1.54591 * 107.32056 * 178.91016 * 8 7 5 10 10 C 1.53703 * 102.87180 * 339.50001 * 9 8 7 11 11 C 1.53202 * 111.54870 * 153.75591 * 10 9 8 12 12 C 1.54805 * 101.39074 * 145.81872 * 11 10 9 13 13 N 1.46933 * 105.53897 * 335.83571 * 12 11 10 14 14 C 1.46501 * 124.37469 * 196.72222 * 13 12 11 15 15 C 1.52997 * 109.47190 * 269.99916 * 14 13 12 16 16 C 1.50696 * 109.47165 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00020 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00132 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00131 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00160 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46895 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47164 * 120.00062 * 20 18 16 23 23 H 1.48501 * 109.46834 * 240.00264 * 20 18 16 24 24 C 1.34889 * 111.24422 * 16.74196 * 13 12 11 25 25 O 1.21281 * 125.21914 * 178.73428 * 24 13 12 26 26 C 1.47696 * 125.60873 * 179.72423 * 7 5 4 27 27 C 1.36092 * 107.10499 * 359.62649 * 4 3 2 28 28 O 1.34047 * 125.38081 * 179.77113 * 2 1 3 29 29 H 1.09008 * 109.47112 * 180.25906 * 1 2 3 30 30 H 1.09001 * 109.47230 * 300.25671 * 1 2 3 31 31 H 1.08996 * 109.47702 * 60.26164 * 1 2 3 32 32 H 1.09001 * 109.87109 * 298.49294 * 8 7 5 33 33 H 1.08994 * 109.87312 * 59.61763 * 8 7 5 34 34 H 1.09008 * 110.90179 * 221.05958 * 9 8 7 35 35 H 1.08997 * 110.67559 * 97.84097 * 9 8 7 36 36 H 1.09001 * 111.04220 * 263.84431 * 11 10 9 37 37 H 1.08995 * 111.04322 * 27.79155 * 11 10 9 38 38 H 1.08995 * 110.23164 * 216.81695 * 12 11 10 39 39 H 1.08997 * 110.30377 * 94.88773 * 12 11 10 40 40 H 1.09006 * 109.46956 * 30.00136 * 14 13 12 41 41 H 1.08998 * 109.46793 * 149.99755 * 14 13 12 42 42 H 1.08998 * 109.46925 * 300.00435 * 15 14 13 43 43 H 1.09004 * 109.47095 * 59.99844 * 15 14 13 44 44 H 0.96995 * 120.00502 * 179.97438 * 19 18 16 45 45 H 1.09006 * 110.39555 * 321.41996 * 26 7 5 46 46 H 1.09003 * 110.39347 * 83.69046 * 26 7 5 47 47 H 1.08001 * 126.53138 * 180.22667 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0594 0.0000 4 6 3.5611 0.6639 -0.0041 5 6 4.7438 1.5439 -0.0079 6 8 5.8604 1.0620 -0.0006 7 7 4.5877 2.8827 -0.0138 8 6 3.3003 3.5949 -0.0292 9 6 3.6116 5.1089 -0.0029 10 6 5.0449 5.1542 0.5503 11 6 5.7888 6.4096 0.0836 12 6 6.6766 6.7143 1.3146 13 7 5.9912 6.0949 2.4572 14 6 6.2686 6.4136 3.8600 15 6 7.3661 5.4866 4.3862 16 6 7.6510 5.8140 5.8293 17 1 7.1042 6.6045 6.3218 18 6 8.6097 5.1043 6.5210 19 7 9.2759 4.1420 5.9211 20 14 8.9623 5.5097 8.3101 21 1 8.0846 6.6250 8.7471 22 1 8.6989 4.3136 9.1498 23 1 10.3840 5.9131 8.4552 24 6 5.0740 5.1948 2.0476 25 8 4.3796 4.5213 2.7791 26 6 5.6808 3.8759 -0.0124 27 6 3.5660 -0.6970 0.0019 28 8 2.2831 -1.0929 0.0044 29 1 -0.3634 -1.0277 0.0046 30 1 -0.3634 0.5178 0.8877 31 1 -0.3634 0.5097 -0.8923 32 1 2.7486 3.3434 -0.9350 33 1 2.7162 3.3235 0.8500 34 1 2.9250 5.6357 0.6599 35 1 3.5724 5.5274 -1.0086 36 1 6.3978 6.1994 -0.7957 37 1 5.0942 7.2269 -0.1099 38 1 6.7589 7.7910 1.4627 39 1 7.6659 6.2753 1.1854 40 1 6.5991 7.4494 3.9388 41 1 5.3625 6.2755 4.4499 42 1 7.0356 4.4509 4.3073 43 1 8.2722 5.6247 3.7962 44 1 9.9505 3.6430 6.4076 45 1 6.4960 3.5428 0.6300 46 1 6.0423 4.0443 -1.0268 47 1 4.4361 -1.3367 0.0043 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268891287.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:26 Heat of formation + Delta-G solvation = -67.882261 kcal Electronic energy + Delta-G solvation = -31008.848592 eV Core-core repulsion = 26771.225122 eV Total energy + Delta-G solvation = -4237.623470 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.50415 -42.31331 -40.48837 -38.26247 -37.49987 -36.08280 -35.67253 -34.11605 -33.17457 -31.95728 -30.52989 -29.42308 -28.76929 -27.22745 -26.45932 -24.43587 -23.85633 -23.40743 -22.56571 -21.83874 -20.84084 -20.05297 -18.87315 -18.72928 -18.03298 -17.73663 -17.41328 -17.16536 -16.88136 -16.64950 -16.53857 -16.04962 -15.41896 -15.07531 -14.92681 -14.85652 -14.62090 -14.52856 -14.37340 -14.05891 -13.94136 -13.91115 -13.86488 -13.62590 -13.29427 -13.15791 -13.00261 -12.91071 -12.56860 -12.47976 -12.33917 -12.14357 -12.01474 -11.98752 -11.70689 -11.64922 -11.44237 -11.40426 -10.68461 -10.62052 -10.18155 -9.75561 -9.57414 -8.27991 -6.42184 -0.02716 0.90768 1.34936 1.37197 1.47713 1.50688 1.52616 1.77550 2.08718 2.13379 2.37844 2.79328 3.05239 3.21523 3.24766 3.34698 3.63866 3.73186 3.83880 3.96508 4.23189 4.26655 4.33188 4.35319 4.40347 4.47409 4.52028 4.57934 4.59705 4.67487 4.71761 4.73875 4.76197 4.80388 4.84952 4.90598 5.00682 5.08979 5.18946 5.21225 5.27210 5.29474 5.40184 5.56007 5.78143 6.09893 6.21666 6.26989 6.41613 6.74242 6.85229 7.18927 7.28488 8.84555 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011383 B = 0.002842 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.244377 B = 9849.567347 C =11076.723097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.200 3.800 3 N -0.480 5.480 4 C -0.097 4.097 5 C 0.603 3.397 6 O -0.579 6.579 7 N -0.602 5.602 8 C 0.121 3.879 9 C -0.096 4.096 10 C -0.106 4.106 11 C -0.095 4.095 12 C 0.087 3.913 13 N -0.621 5.621 14 C 0.144 3.856 15 C 0.024 3.976 16 C -0.544 4.544 17 H 0.070 0.930 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.974 3.026 21 H -0.255 1.255 22 H -0.283 1.283 23 H -0.272 1.272 24 C 0.509 3.491 25 O -0.578 6.578 26 C 0.130 3.870 27 C 0.023 3.977 28 O -0.195 6.195 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.107 0.893 39 H 0.063 0.937 40 H 0.096 0.904 41 H 0.051 0.949 42 H -0.037 1.037 43 H -0.002 1.002 44 H 0.264 0.736 45 H 0.040 0.960 46 H 0.124 0.876 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.068 0.094 -21.822 28.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.009 4.009 3 N -0.210 5.210 4 C -0.216 4.216 5 C 0.392 3.608 6 O -0.460 6.460 7 N -0.333 5.333 8 C -0.001 4.001 9 C -0.133 4.133 10 C -0.110 4.110 11 C -0.132 4.132 12 C -0.035 4.035 13 N -0.353 5.353 14 C 0.022 3.978 15 C -0.014 4.014 16 C -0.582 4.582 17 H 0.088 0.912 18 C -0.202 4.202 19 N -0.575 5.575 20 Si 0.798 3.202 21 H -0.179 1.179 22 H -0.209 1.209 23 H -0.197 1.197 24 C 0.298 3.702 25 O -0.458 6.458 26 C 0.007 3.993 27 C -0.052 4.052 28 O -0.081 6.081 29 H 0.131 0.869 30 H 0.125 0.875 31 H 0.137 0.863 32 H 0.112 0.888 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.154 0.846 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.125 0.875 39 H 0.081 0.919 40 H 0.114 0.886 41 H 0.070 0.930 42 H -0.019 1.019 43 H 0.017 0.983 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.142 0.858 47 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -17.936 -0.017 -21.328 27.867 hybrid contribution 1.263 -1.276 1.701 2.473 sum -16.673 -1.294 -19.627 25.785 Atomic orbital electron populations 1.20624 0.77255 1.06836 1.06529 1.27471 0.98286 0.77537 0.97655 1.70829 1.00191 1.30808 1.19208 1.21530 0.92093 0.93549 1.14385 1.16787 0.86625 0.81150 0.76219 1.90799 1.26013 1.75397 1.53784 1.48356 1.10054 1.04276 1.70619 1.22164 0.83803 0.91617 1.02539 1.22554 0.92107 0.94529 1.04152 1.21577 1.00379 0.97889 0.91185 1.22618 0.98559 0.94647 0.97378 1.22543 0.96230 1.00100 0.84604 1.48827 1.37766 1.41099 1.07567 1.21344 0.97772 0.99615 0.79062 1.19213 0.93418 0.93058 0.95754 1.21583 1.20672 1.18791 0.97168 0.91209 1.26114 0.95614 0.94522 1.03906 1.70149 1.25224 1.23119 1.39035 0.85266 0.78500 0.78413 0.78058 1.17872 1.20870 1.19700 1.21006 0.79148 0.78449 0.91630 1.90660 1.46678 1.45532 1.62906 1.22118 0.89207 0.85554 1.02394 1.25627 0.85750 0.95062 0.98751 1.84429 1.16285 1.38155 1.69226 0.86928 0.87534 0.86318 0.88785 0.93080 0.89614 0.84600 0.85280 0.85697 0.87483 0.91907 0.88556 0.93045 1.01895 0.98337 0.92721 0.94171 0.85787 0.73370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.51 71.23 0.75 0.31 16 2 C 0.20 3.86 8.30 88.39 0.73 4.59 16 3 N -0.48 -12.46 8.83 -293.05 -2.59 -15.05 16 4 C -0.10 -2.91 6.83 40.41 0.28 -2.63 16 5 C 0.60 21.65 7.85 86.66 0.68 22.33 16 6 O -0.58 -24.24 17.17 -4.06 -0.07 -24.31 16 7 N -0.60 -19.11 3.34 -816.98 -2.73 -21.84 16 8 C 0.12 3.06 5.30 86.80 0.46 3.52 16 9 C -0.10 -1.81 5.79 31.37 0.18 -1.62 16 10 C -0.11 -2.65 0.68 -52.75 -0.04 -2.69 16 11 C -0.09 -1.42 6.26 31.28 0.20 -1.22 16 12 C 0.09 2.09 7.37 86.91 0.64 2.73 16 13 N -0.62 -23.00 2.95 -818.18 -2.41 -25.41 16 14 C 0.14 6.38 5.88 86.38 0.51 6.89 16 15 C 0.02 1.35 5.30 29.85 0.16 1.51 16 16 C -0.54 -32.44 9.11 25.60 0.23 -32.21 16 17 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 18 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 19 N -0.94 -60.54 13.29 21.45 0.28 -60.26 16 20 Si 0.97 46.02 29.54 68.60 2.03 48.05 16 21 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 22 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 24 C 0.51 19.76 6.77 87.36 0.59 20.35 16 25 O -0.58 -28.67 17.29 -3.03 -0.05 -28.72 16 26 C 0.13 3.72 5.89 86.30 0.51 4.22 16 27 C 0.02 0.54 11.95 67.32 0.80 1.34 16 28 O -0.19 -4.01 10.73 0.38 0.00 -4.00 16 29 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.09 1.97 7.78 -2.39 -0.02 1.95 16 33 H 0.05 1.62 7.60 -2.39 -0.02 1.61 16 34 H 0.09 1.71 8.00 -2.38 -0.02 1.69 16 35 H 0.14 1.27 8.04 -2.39 -0.02 1.25 16 36 H 0.13 1.12 7.63 -2.39 -0.02 1.10 16 37 H 0.12 1.08 7.96 -2.39 -0.02 1.06 16 38 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.10 3.66 8.14 -2.38 -0.02 3.64 16 41 H 0.05 2.44 7.96 -2.39 -0.02 2.42 16 42 H -0.04 -2.54 8.14 -2.39 -0.02 -2.56 16 43 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 45 H 0.04 1.51 7.94 -2.38 -0.02 1.49 16 46 H 0.12 2.51 7.75 -2.39 -0.02 2.49 16 47 H 0.25 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -96.31 393.59 2.59 -93.72 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.98 Total: 10.18 kcal Atomic # 6 Polarization: 20.51 SS G_CDS: 7.15 Total: 27.66 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -7.44 Total: -122.56 kcal Atomic # 8 Polarization: -56.92 SS G_CDS: -0.12 Total: -57.04 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -96.31 2.59 -93.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268891287.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.835 kcal (2) G-P(sol) polarization free energy of solvation -96.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds