Wall clock time and date at job start Wed Apr 1 2020 05:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35319 * 128.03731 * 2 1 4 4 O 1.34008 * 106.66646 * 180.02562 * 3 2 1 5 5 N 1.20904 * 111.84879 * 359.74299 * 4 3 2 6 6 C 1.30987 * 111.44059 * 0.42386 * 5 4 3 7 7 C 1.48324 * 126.94026 * 179.85956 * 6 5 4 8 8 O 1.21503 * 119.99783 * 179.68434 * 7 6 5 9 9 N 1.34773 * 120.00209 * 359.95883 * 7 6 5 10 10 C 1.47136 * 125.73163 * 359.42153 * 9 7 6 11 11 C 1.54347 * 107.22972 * 179.49842 * 10 9 7 12 12 C 1.55420 * 103.09398 * 338.23477 * 11 10 9 13 13 H 1.09002 * 112.31945 * 153.77657 * 12 11 10 14 14 C 1.46926 * 125.73385 * 179.72244 * 9 7 6 15 15 H 1.08994 * 109.82698 * 84.59581 * 14 9 7 16 16 C 1.52313 * 110.83027 * 323.07505 * 14 9 7 17 17 C 1.52987 * 109.48529 * 306.87295 * 16 14 9 18 18 C 1.50308 * 109.17581 * 308.11415 * 17 16 14 19 19 O 1.21281 * 118.57086 * 201.45592 * 18 17 16 20 20 N 1.33118 * 122.85301 * 21.47578 * 18 17 16 21 21 C 1.46501 * 117.26682 * 179.88610 * 20 18 17 22 22 C 1.53006 * 109.47052 * 90.00171 * 21 20 18 23 23 C 1.50700 * 109.47075 * 179.97438 * 22 21 20 24 24 H 1.08003 * 119.99722 * 0.02562 * 23 22 21 25 25 C 1.37875 * 120.00024 * 179.97438 * 23 22 21 26 26 N 1.31516 * 120.00087 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00126 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47237 * 59.99756 * 27 25 23 29 29 H 1.48496 * 109.47384 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.46969 * 300.00136 * 27 25 23 31 31 H 1.08994 * 109.46754 * 269.99983 * 1 2 3 32 32 H 1.08999 * 109.47063 * 29.99583 * 1 2 3 33 33 H 1.08997 * 109.47120 * 149.99791 * 1 2 3 34 34 H 1.07999 * 126.66587 * 0.02562 * 3 2 1 35 35 H 1.09000 * 109.88875 * 299.04890 * 10 9 7 36 36 H 1.09004 * 109.89055 * 60.24102 * 10 9 7 37 37 H 1.08990 * 110.86050 * 219.73515 * 11 10 9 38 38 H 1.09002 * 110.61457 * 96.61749 * 11 10 9 39 39 H 1.09001 * 109.47505 * 66.87796 * 16 14 9 40 40 H 1.09010 * 109.47156 * 186.87408 * 16 14 9 41 41 H 1.09003 * 109.51534 * 68.02083 * 17 16 14 42 42 H 1.09002 * 109.52153 * 188.20043 * 17 16 14 43 43 H 1.09006 * 109.46902 * 209.99992 * 21 20 18 44 44 H 1.08995 * 109.47336 * 329.99945 * 21 20 18 45 45 H 1.08992 * 109.47109 * 299.99789 * 22 21 20 46 46 H 1.09001 * 109.46850 * 60.00296 * 22 21 20 47 47 H 0.96994 * 120.00122 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3409 1.0658 0.0000 4 8 3.5888 0.5775 -0.0006 5 7 3.5989 -0.6315 0.0041 6 6 2.3837 -1.1205 -0.0006 7 6 1.9993 -2.5531 -0.0001 8 8 0.8256 -2.8671 0.0010 9 7 2.9519 -3.5064 0.0049 10 6 4.4042 -3.2701 -0.0020 11 6 5.0923 -4.6515 0.0204 12 6 3.9919 -5.5836 0.5999 13 1 4.1132 -6.6177 0.2771 14 6 2.7147 -4.9564 0.0118 15 1 2.5602 -5.3106 -1.0074 16 6 1.5039 -5.3031 0.8682 17 6 1.6696 -4.6879 2.2591 18 6 3.0087 -5.0816 2.8167 19 8 3.1723 -5.0387 4.0177 20 7 4.0231 -5.4750 2.0497 21 6 5.2756 -5.8284 2.7224 22 6 5.2658 -7.3188 3.0682 23 6 6.5545 -7.6825 3.7596 24 1 7.3052 -6.9262 3.9353 25 6 6.7747 -8.9806 4.1689 26 7 5.8603 -9.9015 3.9555 27 14 8.3718 -9.4313 5.0267 28 1 8.5065 -8.6345 6.2726 29 1 8.3624 -10.8778 5.3622 30 1 9.5164 -9.1399 4.1266 31 1 -0.3632 0.0000 1.0276 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8899 -0.5139 34 1 2.0559 2.1075 0.0004 35 1 4.6872 -2.7269 -0.9036 36 1 4.6914 -2.7008 0.8821 37 1 5.9676 -4.6386 0.6696 38 1 5.3667 -4.9600 -0.9884 39 1 0.6026 -4.9067 0.4007 40 1 1.4203 -6.3863 0.9578 41 1 1.6104 -3.6019 2.1863 42 1 0.8799 -5.0535 2.9155 43 1 6.1158 -5.6142 2.0618 44 1 5.3743 -5.2438 3.6370 45 1 4.4257 -7.5331 3.7287 46 1 5.1672 -7.9034 2.1534 47 1 6.0154 -10.8147 4.2431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271598633.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:50 Heat of formation + Delta-G solvation = 7.230372 kcal Electronic energy + Delta-G solvation = -32042.089256 eV Core-core repulsion = 27807.722914 eV Total energy + Delta-G solvation = -4234.366342 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.41192 -41.36953 -39.26330 -37.58683 -35.11741 -34.94532 -33.96390 -32.90294 -32.61462 -30.93219 -29.26363 -28.58123 -28.43808 -25.50247 -25.08148 -23.86228 -22.64650 -22.14594 -21.67129 -21.08406 -19.84019 -18.17107 -18.06719 -17.82505 -17.09297 -16.91934 -16.26247 -16.13636 -15.53633 -15.49559 -14.81791 -14.54534 -14.40468 -14.23576 -13.81516 -13.74263 -13.53262 -13.51330 -13.35035 -12.85305 -12.73095 -12.58324 -12.52111 -12.28457 -11.99633 -11.82823 -11.56678 -11.36676 -11.20465 -11.00298 -10.90483 -10.86760 -10.67715 -10.59961 -10.18430 -9.85605 -9.81815 -9.79611 -9.31949 -9.01670 -8.87706 -8.34034 -8.06591 -5.99804 -4.02657 0.83088 1.32211 2.43651 2.80719 2.87426 3.14831 3.33995 3.38217 3.39700 3.46564 3.56725 4.03992 4.31962 4.34838 4.47210 4.49813 4.70661 4.73844 4.79131 4.89091 4.99454 5.07438 5.13495 5.28039 5.31090 5.36343 5.38928 5.47376 5.51946 5.58414 5.66933 5.71780 5.84125 5.88948 5.89990 5.95613 6.06482 6.18672 6.25669 6.56322 6.82826 6.90848 7.12974 7.59547 7.63093 7.75724 7.83474 8.00836 8.05148 8.38021 8.70815 9.03797 9.60975 11.11665 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019669 B = 0.002802 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.237693 B = 9990.134141 C =10457.293624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.150 4.150 3 C -0.068 4.068 4 O 0.123 5.877 5 N -0.324 5.324 6 C -0.026 4.026 7 C 0.615 3.385 8 O -0.517 6.517 9 N -0.597 5.597 10 C 0.108 3.892 11 C -0.150 4.150 12 C 0.138 3.862 13 H 0.111 0.889 14 C 0.132 3.868 15 H 0.097 0.903 16 C -0.133 4.133 17 C -0.126 4.126 18 C 0.513 3.487 19 O -0.548 6.548 20 N -0.591 5.591 21 C 0.106 3.894 22 C 0.017 3.983 23 C -0.520 4.520 24 H 0.055 0.945 25 C 0.059 3.941 26 N -0.894 5.894 27 Si 0.894 3.106 28 H -0.276 1.276 29 H -0.287 1.287 30 H -0.277 1.277 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.223 0.777 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.021 0.979 46 H 0.014 0.986 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.376 20.923 -15.013 27.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.155 4.155 3 C -0.149 4.149 4 O 0.047 5.953 5 N -0.024 5.024 6 C -0.186 4.186 7 C 0.401 3.599 8 O -0.392 6.392 9 N -0.330 5.330 10 C -0.015 4.015 11 C -0.188 4.188 12 C 0.033 3.967 13 H 0.129 0.871 14 C 0.030 3.970 15 H 0.115 0.885 16 C -0.171 4.171 17 C -0.166 4.166 18 C 0.301 3.699 19 O -0.426 6.426 20 N -0.323 5.323 21 C -0.015 4.015 22 C -0.021 4.021 23 C -0.559 4.559 24 H 0.073 0.927 25 C -0.143 4.143 26 N -0.533 5.533 27 Si 0.722 3.278 28 H -0.202 1.202 29 H -0.213 1.213 30 H -0.202 1.202 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.239 0.761 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.115 0.885 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.040 0.960 46 H 0.033 0.967 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.845 20.024 -14.361 26.181 hybrid contribution 0.226 -0.072 0.424 0.486 sum -8.618 19.952 -13.938 25.819 Atomic orbital electron populations 1.20226 0.86476 1.03848 1.03344 1.21371 0.99159 0.90023 1.04976 1.25791 0.82399 1.01331 1.05359 1.84793 1.29502 1.15371 1.65596 1.74298 1.21546 0.91447 1.15152 1.23376 0.89606 0.96882 1.08686 1.16371 0.84580 0.81767 0.77149 1.90750 1.16798 1.81103 1.50509 1.48256 1.07121 1.06110 1.71563 1.22154 0.78596 0.98126 1.02617 1.23280 0.99292 0.93345 1.02884 1.21965 0.93654 0.99812 0.81274 0.87103 1.21809 0.95687 0.79125 1.00408 0.88540 1.21756 0.98719 1.01901 0.94687 1.21549 0.95550 1.02285 0.97219 1.19941 0.85887 0.77251 0.86848 1.90728 1.82899 1.54029 1.14927 1.47249 1.14481 1.65224 1.05357 1.21985 0.82497 1.00401 0.96594 1.19316 0.97651 0.88370 0.96742 1.21053 1.02193 0.94343 1.38272 0.92658 1.24989 0.96751 0.96563 0.95949 1.69959 1.33955 1.02219 1.47141 0.86634 0.83745 0.77296 0.80173 1.20184 1.21300 1.20234 0.90448 0.91039 0.89393 0.76071 0.90666 0.90784 0.88091 0.89275 0.88222 0.89916 0.89636 0.88456 0.91671 0.90658 0.96038 0.96735 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.01 36.01 0.36 -0.23 16 2 C -0.15 -1.35 6.34 -104.11 -0.66 -2.01 16 3 C -0.07 -0.44 12.24 29.69 0.36 -0.07 16 4 O 0.12 1.11 11.18 17.27 0.19 1.31 16 5 N -0.32 -3.67 9.74 33.29 0.32 -3.35 16 6 C -0.03 -0.31 7.03 -82.53 -0.58 -0.89 16 7 C 0.61 8.00 6.37 -12.11 -0.08 7.92 16 8 O -0.52 -7.25 12.60 5.36 0.07 -7.18 16 9 N -0.60 -7.33 2.81 -165.21 -0.46 -7.80 16 10 C 0.11 1.23 5.54 -2.99 -0.02 1.21 16 11 C -0.15 -1.66 6.37 -24.74 -0.16 -1.82 16 12 C 0.14 1.85 3.67 -66.73 -0.24 1.61 16 13 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 14 C 0.13 1.57 3.27 -67.55 -0.22 1.35 16 15 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 16 C -0.13 -1.70 4.95 -27.09 -0.13 -1.84 16 17 C -0.13 -1.96 5.59 -28.08 -0.16 -2.12 16 18 C 0.51 10.00 7.45 -11.91 -0.09 9.91 16 19 O -0.55 -13.25 16.17 5.56 0.09 -13.16 16 20 N -0.59 -10.53 2.50 -165.50 -0.41 -10.94 16 21 C 0.11 2.23 4.85 -4.04 -0.02 2.21 16 22 C 0.02 0.45 5.28 -27.88 -0.15 0.30 16 23 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 24 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 25 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 26 N -0.89 -27.16 13.29 55.43 0.74 -26.43 16 27 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.79 6.89 -51.93 -0.36 0.43 16 34 H 0.22 0.35 8.06 -52.49 -0.42 -0.07 16 35 H 0.08 0.77 7.80 -51.93 -0.40 0.37 16 36 H 0.07 0.97 7.70 -51.93 -0.40 0.57 16 37 H 0.10 1.23 5.85 -51.93 -0.30 0.92 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 1.26 6.27 -51.93 -0.33 0.94 16 40 H 0.08 1.03 8.14 -51.92 -0.42 0.60 16 41 H 0.09 1.35 6.12 -51.93 -0.32 1.04 16 42 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.07 1.21 5.88 -51.93 -0.31 0.91 16 44 H 0.08 1.76 7.13 -51.93 -0.37 1.39 16 45 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 373.70 15.07 5.63 5.63 Total: -1.00 -35.95 373.70 -7.60 -43.55 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -6.55 Total: -0.52 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -2.19 Total: 2.03 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.18 Total: -48.52 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.35 Total: -19.03 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.95 -7.60 -43.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271598633.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.778 kcal (2) G-P(sol) polarization free energy of solvation -35.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds