Wall clock time and date at job start Wed Apr 1 2020 04:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30337 * 126.73010 * 2 1 4 4 O 1.20901 * 111.81875 * 180.26417 * 3 2 1 5 5 C 1.34249 * 111.48853 * 0.02562 * 4 3 2 6 6 N 1.38723 * 126.87982 * 179.97438 * 5 4 3 7 7 C 1.34777 * 120.00119 * 0.02562 * 6 5 4 8 8 O 1.21273 * 119.99951 * 354.89937 * 7 6 5 9 9 C 1.50708 * 119.99735 * 174.90459 * 7 6 5 10 10 C 1.52872 * 118.99674 * 163.82891 * 9 7 6 11 11 C 1.54000 * 120.83245 * 92.33217 * 9 7 6 12 12 H 1.08998 * 122.24017 * 359.08530 * 11 9 7 13 13 C 1.54706 * 105.06595 * 221.78565 * 11 9 7 14 14 C 1.54962 * 102.70070 * 337.54970 * 13 11 9 15 15 N 1.47377 * 117.18197 * 318.62862 * 9 7 6 16 16 C 1.34781 * 126.94338 * 344.25062 * 15 9 7 17 17 O 1.21273 * 120.00362 * 4.56471 * 16 15 9 18 18 C 1.50700 * 119.99656 * 184.56884 * 16 15 9 19 19 C 1.53004 * 109.47103 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.47103 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99783 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00072 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00006 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00227 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47391 * 89.99862 * 24 22 20 26 26 H 1.48503 * 109.47222 * 209.99846 * 24 22 20 27 27 H 1.48499 * 109.46955 * 329.99457 * 24 22 20 28 28 C 1.36525 * 106.23655 * 359.97438 * 5 4 3 29 29 C 1.50704 * 128.03672 * 180.02562 * 28 5 4 30 30 H 1.09001 * 109.47110 * 269.67915 * 1 2 3 31 31 H 1.08999 * 109.47274 * 29.68491 * 1 2 3 32 32 H 1.09004 * 109.46462 * 149.68443 * 1 2 3 33 33 H 0.97000 * 119.99905 * 179.97438 * 6 5 4 34 34 H 1.09007 * 117.45246 * 356.77397 * 10 9 7 35 35 H 1.08994 * 117.45648 * 141.53556 * 10 9 7 36 36 H 1.08996 * 110.76761 * 219.24606 * 13 11 9 37 37 H 1.09004 * 110.76530 * 95.84767 * 13 11 9 38 38 H 1.09006 * 110.66194 * 279.10990 * 14 13 11 39 39 H 1.08990 * 110.80589 * 156.06164 * 14 13 11 40 40 H 1.09000 * 109.47179 * 299.99787 * 18 16 15 41 41 H 1.08999 * 109.47365 * 59.99885 * 18 16 15 42 42 H 1.09000 * 109.46583 * 299.99728 * 19 18 16 43 43 H 1.08998 * 109.46930 * 59.99454 * 19 18 16 44 44 H 0.96991 * 120.00342 * 180.02562 * 23 22 20 45 45 H 1.08998 * 109.47316 * 269.98330 * 29 28 5 46 46 H 1.09002 * 109.46789 * 29.98489 * 29 28 5 47 47 H 1.09000 * 109.47031 * 149.98488 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2864 1.0446 0.0000 4 8 3.4547 0.7335 -0.0052 5 6 3.6085 -0.6001 -0.0100 6 7 4.8062 -1.3001 -0.0170 7 6 5.9769 -0.6324 -0.0191 8 8 5.9851 0.5770 -0.1082 9 6 7.2759 -1.3888 0.0892 10 6 8.5787 -0.6815 -0.2842 11 6 8.0366 -1.8359 -1.1730 12 1 7.6628 -1.6383 -2.1776 13 6 8.5238 -3.2709 -0.8617 14 6 8.5243 -3.3019 0.6876 15 7 7.3241 -2.5108 1.0436 16 6 6.4523 -2.7651 2.0396 17 8 5.4619 -2.0773 2.1689 18 6 6.7082 -3.9042 2.9924 19 6 5.5757 -3.9750 4.0187 20 6 5.8313 -5.1145 4.9711 21 1 6.7132 -5.7273 4.8557 22 6 4.9395 -5.3749 5.9899 23 7 3.8659 -4.6284 6.1307 24 14 5.2560 -6.7878 7.1700 25 1 6.0506 -6.2991 8.3255 26 1 3.9602 -7.3285 7.6536 27 1 6.0087 -7.8590 6.4691 28 6 2.3501 -1.1295 -0.0066 29 6 1.9543 -2.5837 -0.0090 30 1 -0.3633 -0.0058 1.0277 31 1 -0.3634 0.8928 -0.5089 32 1 -0.3632 -0.8872 -0.5188 33 1 4.8010 -2.2701 -0.0196 34 1 8.5058 0.3360 -0.6685 35 1 9.4570 -0.8908 0.3263 36 1 9.5289 -3.4308 -1.2517 37 1 7.8303 -4.0100 -1.2627 38 1 9.4255 -2.8318 1.0814 39 1 8.4338 -4.3242 1.0544 40 1 6.7527 -4.8404 2.4359 41 1 7.6555 -3.7419 3.5067 42 1 5.5308 -3.0389 4.5752 43 1 4.6287 -4.1375 3.5041 44 1 3.2387 -4.8112 6.8476 45 1 1.8547 -2.9314 -1.0372 46 1 2.7198 -3.1693 0.5001 47 1 1.0023 -2.7020 0.5084 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271767491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:57 Heat of formation + Delta-G solvation = 33.206312 kcal Electronic energy + Delta-G solvation = -31601.673844 eV Core-core repulsion = 27368.433903 eV Total energy + Delta-G solvation = -4233.239941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.68945 -41.31464 -39.10814 -38.20072 -35.77142 -34.84939 -33.64748 -33.01943 -31.43713 -30.91116 -30.45528 -28.67756 -27.71442 -26.07962 -24.88801 -24.21033 -22.55095 -21.79340 -20.92668 -20.65458 -19.74339 -19.03453 -17.96340 -17.61990 -17.52056 -16.60200 -16.04076 -15.70668 -15.60452 -15.12080 -15.02172 -14.62336 -14.45553 -14.18496 -13.60617 -13.53098 -13.47088 -13.21412 -13.01302 -12.98484 -12.75744 -12.68513 -12.40879 -12.26337 -12.22588 -12.18278 -11.52366 -11.26248 -11.20887 -11.02729 -10.98088 -10.91179 -10.83224 -10.66904 -10.10309 -10.06773 -9.79988 -9.68879 -9.39160 -9.17789 -8.64779 -8.40306 -8.14559 -6.04148 -4.09490 1.39611 2.07351 2.27287 2.53378 2.82630 2.92919 3.27781 3.34498 3.36092 3.37264 3.48253 4.07981 4.21595 4.26010 4.39839 4.48061 4.51667 4.68100 4.78837 4.96738 5.02277 5.12344 5.27323 5.28749 5.31144 5.37710 5.46433 5.48736 5.54146 5.55118 5.66415 5.70231 5.71958 5.73085 5.90637 5.97704 5.98625 6.02682 6.13895 6.20847 6.38717 6.70488 7.00712 7.49537 7.63557 7.72571 7.81608 7.96069 8.24781 8.42358 8.49379 8.98129 9.54869 11.06537 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008019 B = 0.004025 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3490.813396 B = 6955.452767 C = 9745.079650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.041 3.959 3 N -0.374 5.374 4 O 0.106 5.894 5 C 0.229 3.771 6 N -0.595 5.595 7 C 0.567 3.433 8 O -0.497 6.497 9 C 0.052 3.948 10 C -0.118 4.118 11 C -0.153 4.153 12 H 0.128 0.872 13 C -0.106 4.106 14 C 0.096 3.904 15 N -0.600 5.600 16 C 0.523 3.477 17 O -0.517 6.517 18 C -0.121 4.121 19 C 0.039 3.961 20 C -0.530 4.530 21 H 0.056 0.944 22 C 0.060 3.940 23 N -0.888 5.888 24 Si 0.892 3.108 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.274 1.274 28 C -0.242 4.242 29 C -0.068 4.068 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.430 0.570 34 H 0.122 0.878 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.023 0.977 43 H 0.024 0.976 44 H 0.262 0.738 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.658 1.786 -19.006 19.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.117 4.117 3 N -0.086 5.086 4 O 0.047 5.953 5 C 0.069 3.931 6 N -0.246 5.246 7 C 0.353 3.647 8 O -0.368 6.368 9 C -0.038 4.038 10 C -0.157 4.157 11 C -0.173 4.173 12 H 0.146 0.854 13 C -0.144 4.144 14 C -0.026 4.026 15 N -0.338 5.338 16 C 0.315 3.685 17 O -0.390 6.390 18 C -0.160 4.160 19 C 0.001 3.999 20 C -0.568 4.568 21 H 0.074 0.926 22 C -0.142 4.142 23 N -0.526 5.526 24 Si 0.720 3.280 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.198 1.198 28 C -0.251 4.251 29 C -0.125 4.125 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.271 0.729 34 H 0.140 0.860 35 H 0.128 0.872 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.116 0.884 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.712 4.336 -18.724 19.789 hybrid contribution 0.247 -2.012 0.988 2.255 sum 4.959 2.325 -17.737 18.563 Atomic orbital electron populations 1.20144 0.85928 1.03432 1.03503 1.23012 0.98593 0.88216 1.01907 1.73873 0.88550 1.22989 1.23169 1.85053 1.21570 1.19514 1.69119 1.20374 0.87822 0.84339 1.00611 1.42464 1.01087 1.10346 1.70744 1.19220 0.83431 0.87111 0.74910 1.90793 1.86549 1.13053 1.46445 1.21353 0.92122 0.95293 0.95003 1.23757 0.94611 0.97510 0.99852 1.24280 1.03124 0.94853 0.95012 0.85440 1.22370 1.02766 0.94080 0.95203 1.22634 0.87851 0.97373 0.94754 1.48799 1.28256 1.24664 1.32047 1.21724 0.81209 0.86567 0.79037 1.90770 1.27282 1.50224 1.70763 1.21898 1.04081 0.93656 0.96402 1.18913 0.91603 0.97575 0.91806 1.21158 1.07900 1.14675 1.13047 0.92593 1.25007 0.95077 0.96484 0.97624 1.69988 1.11713 1.38834 1.32062 0.86599 0.77619 0.82457 0.81325 1.20639 1.21177 1.19846 1.20351 0.89338 0.98244 1.17161 1.19994 1.02707 0.88137 1.01692 0.90014 0.90690 0.90052 0.72852 0.86007 0.87187 0.89048 0.89554 0.90470 0.88447 0.89985 0.89930 0.95832 0.95787 0.92863 0.91618 0.91170 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.38 36.00 0.37 -0.42 16 2 C 0.04 0.64 7.31 -82.20 -0.60 0.04 16 3 N -0.37 -6.80 12.06 33.48 0.40 -6.40 16 4 O 0.11 2.05 9.64 -4.71 -0.05 2.01 16 5 C 0.23 3.99 7.89 -15.05 -0.12 3.87 16 6 N -0.59 -9.42 3.48 -11.78 -0.04 -9.46 16 7 C 0.57 9.19 6.46 -10.98 -0.07 9.12 16 8 O -0.50 -9.46 15.41 -15.77 -0.24 -9.70 16 9 C 0.05 0.66 3.21 -132.03 -0.42 0.23 16 10 C -0.12 -1.13 9.54 -25.49 -0.24 -1.37 16 11 C -0.15 -1.25 7.15 -87.90 -0.63 -1.87 16 12 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 13 C -0.11 -0.66 7.02 -24.80 -0.17 -0.84 16 14 C 0.10 0.81 6.45 -2.13 -0.01 0.80 16 15 N -0.60 -7.77 3.28 -156.50 -0.51 -8.29 16 16 C 0.52 9.11 7.45 -10.98 -0.08 9.03 16 17 O -0.52 -11.01 12.71 5.56 0.07 -10.94 16 18 C -0.12 -2.22 4.65 -27.88 -0.13 -2.35 16 19 C 0.04 0.97 4.26 -27.88 -0.12 0.86 16 20 C -0.53 -14.31 9.11 -34.44 -0.31 -14.63 16 21 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 24 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 C -0.24 -3.75 6.35 -104.21 -0.66 -4.41 16 29 C -0.07 -0.84 10.26 36.01 0.37 -0.47 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.43 6.10 7.40 -40.82 -0.30 5.80 16 34 H 0.12 1.19 7.90 -51.92 -0.41 0.78 16 35 H 0.11 0.88 7.16 -51.93 -0.37 0.51 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.57 7.29 -51.93 -0.38 0.19 16 39 H 0.10 0.75 7.22 -51.93 -0.37 0.37 16 40 H 0.08 1.32 7.79 -51.93 -0.40 0.92 16 41 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 43 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 47 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 391.84 15.07 5.90 5.90 Total: -1.00 -36.48 391.84 -8.52 -45.00 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.84 Total: 2.61 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -2.93 Total: -0.82 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.59 Total: -50.03 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.22 Total: -18.64 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.48 -8.52 -45.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271767491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.202 kcal (2) G-P(sol) polarization free energy of solvation -36.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds