Wall clock time and date at job start Wed Apr 1 2020 05:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30620 * 125.41928 * 2 1 4 4 C 1.33688 * 108.99477 * 179.78547 * 3 2 1 5 5 C 1.36342 * 107.45077 * 0.37149 * 4 3 2 6 6 C 1.46722 * 126.64099 * 179.89528 * 5 4 3 7 7 O 1.21684 * 120.00364 * 359.71896 * 6 5 4 8 8 N 1.34775 * 119.99973 * 179.70930 * 6 5 4 9 9 C 1.47144 * 125.73272 * 359.96521 * 8 6 5 10 10 C 1.54342 * 107.23064 * 179.67709 * 9 8 6 11 11 C 1.55428 * 103.00458 * 337.84696 * 10 9 8 12 12 H 1.09000 * 111.53705 * 153.65656 * 11 10 9 13 13 C 1.46923 * 125.73330 * 179.97438 * 8 6 5 14 14 H 1.08996 * 109.82190 * 84.80972 * 13 8 6 15 15 C 1.52312 * 110.84291 * 323.05592 * 13 8 6 16 16 C 1.52978 * 109.48363 * 306.86379 * 15 13 8 17 17 C 1.50311 * 109.18455 * 308.12594 * 16 15 13 18 18 O 1.21287 * 118.57640 * 201.49644 * 17 16 15 19 19 N 1.33120 * 122.85100 * 21.47989 * 17 16 15 20 20 C 1.46498 * 117.27073 * 179.86015 * 19 17 16 21 21 C 1.52998 * 109.47651 * 84.58273 * 20 19 17 22 22 C 1.50700 * 109.47684 * 184.96176 * 21 20 19 23 23 H 1.07994 * 119.99838 * 0.02562 * 22 21 20 24 24 C 1.37880 * 119.99967 * 180.02562 * 22 21 20 25 25 N 1.31509 * 119.99448 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 120.00080 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.47039 * 89.99688 * 26 24 22 28 28 H 1.48500 * 109.47161 * 209.99826 * 26 24 22 29 29 H 1.48497 * 109.46991 * 330.00039 * 26 24 22 30 30 O 1.33658 * 125.42385 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47078 * 269.97293 * 1 2 3 32 32 H 1.08995 * 109.47313 * 29.97902 * 1 2 3 33 33 H 1.09004 * 109.46618 * 149.97809 * 1 2 3 34 34 H 1.07999 * 126.27662 * 180.25775 * 4 3 2 35 35 H 1.08999 * 109.89090 * 60.27155 * 9 8 6 36 36 H 1.09000 * 110.02478 * 299.15236 * 9 8 6 37 37 H 1.08999 * 110.70993 * 219.46611 * 10 9 8 38 38 H 1.08998 * 110.85371 * 96.29156 * 10 9 8 39 39 H 1.08994 * 109.47231 * 66.86988 * 15 13 8 40 40 H 1.09008 * 109.46610 * 186.85878 * 15 13 8 41 41 H 1.09001 * 109.51721 * 188.22384 * 16 15 13 42 42 H 1.08992 * 109.56783 * 68.07251 * 16 15 13 43 43 H 1.09004 * 109.47679 * 204.58903 * 20 19 17 44 44 H 1.09008 * 109.47143 * 324.58572 * 20 19 17 45 45 H 1.09003 * 109.47273 * 304.96773 * 21 20 19 46 46 H 1.09007 * 109.46777 * 64.96173 * 21 20 19 47 47 H 0.97007 * 119.99531 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0645 0.0000 4 6 3.5464 0.6865 0.0047 5 6 3.5708 -0.6767 -0.0007 6 6 4.7636 -1.5311 -0.0005 7 8 5.8719 -1.0288 -0.0002 8 7 4.6318 -2.8724 -0.0003 9 6 3.3590 -3.6108 0.0004 10 6 3.7032 -5.1153 -0.0081 11 6 5.1466 -5.1406 -0.5841 12 1 5.6981 -6.0169 -0.2433 13 6 5.7347 -3.8430 -0.0006 14 1 6.0738 -4.0175 1.0204 15 6 6.8928 -3.3470 -0.8566 16 6 6.3778 -2.9827 -2.2503 17 6 5.5931 -4.1387 -2.8046 18 8 5.4428 -4.2150 -4.0057 19 7 5.0562 -5.0825 -2.0345 20 6 4.3127 -6.1526 -2.7041 21 6 5.2861 -7.2400 -3.1633 22 6 4.5391 -8.2802 -3.9576 23 1 3.4764 -8.1760 -4.1192 24 6 5.2125 -9.3650 -4.4781 25 7 4.5604 -10.2730 -5.1708 26 14 7.0505 -9.5457 -4.1980 27 1 7.2878 -10.3123 -2.9485 28 1 7.6573 -10.2680 -5.3449 29 1 7.6674 -8.2003 -4.0780 30 8 2.2817 -1.0892 -0.0005 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3634 0.8901 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 4.4055 1.3409 0.0099 35 1 2.7827 -3.3572 -0.8894 36 1 2.7862 -3.3665 0.8950 37 1 3.0198 -5.6635 -0.6565 38 1 3.6843 -5.5233 1.0025 39 1 7.3372 -2.4669 -0.3920 40 1 7.6446 -4.1319 -0.9407 41 1 7.2218 -2.7679 -2.9057 42 1 5.7354 -2.1047 -2.1840 43 1 3.5895 -6.5816 -2.0105 44 1 3.7890 -5.7450 -3.5689 45 1 6.0612 -6.7941 -3.7867 46 1 5.7450 -7.7081 -2.2924 47 1 5.0342 -11.0360 -5.5373 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272134030.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:05 Heat of formation + Delta-G solvation = -28.227040 kcal Electronic energy + Delta-G solvation = -32005.720914 eV Core-core repulsion = 27769.817023 eV Total energy + Delta-G solvation = -4235.903891 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.80641 -41.47395 -39.33367 -37.71136 -35.45232 -35.03237 -34.05477 -32.88094 -32.61185 -31.28379 -29.79511 -28.83971 -28.26151 -25.36017 -24.86666 -23.68944 -22.56556 -22.20325 -21.89014 -21.01235 -20.04051 -18.28778 -17.79231 -17.53918 -17.23349 -16.77504 -16.50246 -16.23794 -15.83192 -15.59958 -14.96120 -14.50422 -14.35994 -14.17696 -14.12663 -13.78095 -13.67468 -13.58435 -13.46448 -13.09592 -12.96899 -12.81103 -12.76413 -12.57441 -12.23946 -11.91329 -11.79506 -11.59051 -11.36979 -11.19001 -11.17005 -11.06447 -10.93127 -10.44413 -10.36124 -9.98719 -9.83716 -9.40948 -9.36068 -9.12122 -8.97301 -8.54612 -8.27514 -6.05692 -4.03794 0.43697 1.93441 2.01768 2.55529 2.73711 3.01307 3.28492 3.29024 3.38104 3.44068 3.52543 3.93114 4.17664 4.34921 4.45050 4.51707 4.59779 4.65387 4.74605 4.82799 4.85586 4.91441 4.93317 4.99133 5.22287 5.26233 5.28972 5.32087 5.35582 5.40437 5.51955 5.56691 5.69778 5.73738 5.81169 5.84371 5.93412 6.03281 6.10515 6.33093 6.61009 6.66694 6.94915 7.18021 7.21104 7.39831 7.60907 7.74944 7.87685 8.48713 8.57293 8.97645 9.56731 11.07598 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017660 B = 0.002996 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.138552 B = 9343.576372 C =10000.980316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.218 3.782 3 N -0.491 5.491 4 C 0.057 3.943 5 C -0.110 4.110 6 C 0.625 3.375 7 O -0.511 6.511 8 N -0.601 5.601 9 C 0.104 3.896 10 C -0.149 4.149 11 C 0.136 3.864 12 H 0.110 0.890 13 C 0.133 3.867 14 H 0.098 0.902 15 C -0.134 4.134 16 C -0.127 4.127 17 C 0.512 3.488 18 O -0.541 6.541 19 N -0.596 5.596 20 C 0.117 3.883 21 C -0.020 4.020 22 C -0.517 4.517 23 H 0.072 0.928 24 C 0.069 3.931 25 N -0.902 5.902 26 Si 0.880 3.120 27 H -0.278 1.278 28 H -0.287 1.287 29 H -0.266 1.266 30 O -0.184 6.184 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.198 0.802 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.023 0.977 46 H 0.009 0.991 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.959 19.165 17.962 26.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.013 3.987 3 N -0.221 5.221 4 C -0.087 4.087 5 C -0.165 4.165 6 C 0.413 3.587 7 O -0.389 6.389 8 N -0.335 5.335 9 C -0.018 4.018 10 C -0.188 4.188 11 C 0.031 3.969 12 H 0.128 0.872 13 C 0.030 3.970 14 H 0.116 0.884 15 C -0.171 4.171 16 C -0.168 4.168 17 C 0.300 3.700 18 O -0.418 6.418 19 N -0.328 5.328 20 C -0.004 4.004 21 C -0.059 4.059 22 C -0.556 4.556 23 H 0.091 0.909 24 C -0.132 4.132 25 N -0.541 5.541 26 Si 0.707 3.293 27 H -0.204 1.204 28 H -0.213 1.213 29 H -0.191 1.191 30 O -0.071 6.071 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.215 0.785 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.119 0.881 40 H 0.100 0.900 41 H 0.117 0.883 42 H 0.106 0.894 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.041 0.959 46 H 0.027 0.973 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.691 19.863 17.235 26.713 hybrid contribution 1.162 -0.955 0.134 1.511 sum -3.529 18.908 17.369 25.916 Atomic orbital electron populations 1.20414 0.80686 1.05814 1.05159 1.26696 0.96839 0.78695 0.96514 1.70470 1.01994 1.29929 1.19709 1.23603 0.95191 0.92007 0.97883 1.23056 0.82363 0.95485 1.15630 1.15872 0.85624 0.79989 0.77208 1.90872 1.23440 1.73222 1.51317 1.48278 1.08931 1.04316 1.71929 1.22141 0.85361 0.91854 1.02470 1.23294 0.97703 0.94740 1.03036 1.21977 0.96315 0.97349 0.81298 0.87210 1.21794 0.87560 0.87133 1.00479 0.88401 1.21760 0.97038 1.03634 0.94710 1.21569 1.00918 0.97078 0.97189 1.19985 0.79915 0.83267 0.86868 1.90761 1.59660 1.76597 1.14827 1.47313 1.53961 1.26251 1.05295 1.21744 0.94884 0.86984 0.96748 1.19817 0.96033 0.93805 0.96203 1.20955 0.96736 1.05067 1.32798 0.90942 1.24971 0.98142 0.95562 0.94559 1.69907 1.36224 1.12035 1.35949 0.86776 0.86233 0.78516 0.77777 1.20362 1.21336 1.19061 1.84540 1.16213 1.37205 1.69120 0.88328 0.87625 0.88731 0.78545 0.90866 0.90691 0.87988 0.89093 0.88104 0.89978 0.88335 0.89428 0.91052 0.90306 0.95881 0.97287 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 36.01 0.38 0.12 16 2 C 0.22 1.92 8.32 -12.79 -0.11 1.81 16 3 N -0.49 -5.25 11.26 -10.81 -0.12 -5.37 16 4 C 0.06 0.60 11.66 -17.43 -0.20 0.40 16 5 C -0.11 -1.23 6.98 -36.84 -0.26 -1.49 16 6 C 0.63 7.47 6.32 -12.83 -0.08 7.39 16 7 O -0.51 -6.88 14.16 5.20 0.07 -6.81 16 8 N -0.60 -6.46 2.82 -165.81 -0.47 -6.93 16 9 C 0.10 0.97 5.53 -2.99 -0.02 0.96 16 10 C -0.15 -1.35 6.35 -24.74 -0.16 -1.51 16 11 C 0.14 1.55 3.66 -66.71 -0.24 1.31 16 12 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 13 C 0.13 1.37 3.27 -67.56 -0.22 1.14 16 14 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 15 C -0.13 -1.53 4.95 -27.09 -0.13 -1.67 16 16 C -0.13 -1.82 5.59 -28.08 -0.16 -1.98 16 17 C 0.51 9.22 7.34 -11.91 -0.09 9.14 16 18 O -0.54 -12.41 16.01 5.55 0.09 -12.32 16 19 N -0.60 -9.57 2.51 -165.48 -0.42 -9.98 16 20 C 0.12 2.27 4.73 -4.04 -0.02 2.25 16 21 C -0.02 -0.49 4.27 -27.88 -0.12 -0.61 16 22 C -0.52 -14.71 9.66 -34.44 -0.33 -15.04 16 23 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 24 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 25 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 26 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 29 H -0.27 -6.62 6.54 56.52 0.37 -6.25 16 30 O -0.18 -1.84 8.52 4.44 0.04 -1.81 16 31 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.20 1.74 8.06 -52.49 -0.42 1.31 16 35 H 0.07 0.78 7.75 -51.93 -0.40 0.38 16 36 H 0.07 0.59 7.78 -51.93 -0.40 0.18 16 37 H 0.10 1.03 5.92 -51.93 -0.31 0.72 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 1.17 6.27 -51.93 -0.33 0.84 16 40 H 0.08 0.89 8.14 -51.92 -0.42 0.46 16 41 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.09 1.29 6.13 -51.93 -0.32 0.97 16 43 H 0.07 1.21 5.96 -51.93 -0.31 0.90 16 44 H 0.08 1.73 7.32 -51.92 -0.38 1.35 16 45 H 0.02 0.61 6.92 -51.93 -0.36 0.25 16 46 H 0.01 0.20 7.57 -51.92 -0.39 -0.19 16 47 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 373.17 15.07 5.62 5.62 Total: -1.00 -36.91 373.17 -7.52 -44.43 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -6.59 Total: -1.28 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -1.86 Total: 4.15 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.23 Total: -49.42 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: 0.20 Total: -20.93 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.91 -7.52 -44.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272134030.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.208 kcal (2) G-P(sol) polarization free energy of solvation -36.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds