Wall clock time and date at job start Wed Apr 1 2020 05:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30620 * 125.41928 * 2 1 4 4 C 1.33688 * 108.99477 * 179.78547 * 3 2 1 5 5 C 1.36342 * 107.45077 * 0.37149 * 4 3 2 6 6 C 1.46722 * 126.64099 * 179.89528 * 5 4 3 7 7 O 1.21684 * 120.00364 * 359.71896 * 6 5 4 8 8 N 1.34775 * 119.99973 * 179.70930 * 6 5 4 9 9 C 1.47144 * 125.73272 * 359.96521 * 8 6 5 10 10 C 1.54342 * 107.23064 * 179.67709 * 9 8 6 11 11 C 1.55428 * 103.00458 * 337.84696 * 10 9 8 12 12 H 1.09000 * 111.53705 * 153.65656 * 11 10 9 13 13 C 1.46923 * 125.73330 * 179.97438 * 8 6 5 14 14 H 1.08996 * 109.82190 * 84.80972 * 13 8 6 15 15 C 1.52312 * 110.84291 * 323.05592 * 13 8 6 16 16 C 1.52978 * 109.48363 * 306.86379 * 15 13 8 17 17 C 1.50311 * 109.18455 * 308.12594 * 16 15 13 18 18 O 1.21287 * 118.57640 * 201.49644 * 17 16 15 19 19 N 1.33120 * 122.85100 * 21.47989 * 17 16 15 20 20 C 1.46498 * 117.27073 * 179.86015 * 19 17 16 21 21 C 1.52998 * 109.47651 * 84.58273 * 20 19 17 22 22 C 1.50700 * 109.47684 * 184.96176 * 21 20 19 23 23 H 1.07994 * 119.99838 * 0.02562 * 22 21 20 24 24 C 1.37880 * 119.99967 * 180.02562 * 22 21 20 25 25 N 1.31509 * 119.99448 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 120.00080 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.47039 * 89.99688 * 26 24 22 28 28 H 1.48500 * 109.47161 * 209.99826 * 26 24 22 29 29 H 1.48497 * 109.46991 * 330.00039 * 26 24 22 30 30 O 1.33658 * 125.42385 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47078 * 269.97293 * 1 2 3 32 32 H 1.08995 * 109.47313 * 29.97902 * 1 2 3 33 33 H 1.09004 * 109.46618 * 149.97809 * 1 2 3 34 34 H 1.07999 * 126.27662 * 180.25775 * 4 3 2 35 35 H 1.08999 * 109.89090 * 60.27155 * 9 8 6 36 36 H 1.09000 * 110.02478 * 299.15236 * 9 8 6 37 37 H 1.08999 * 110.70993 * 219.46611 * 10 9 8 38 38 H 1.08998 * 110.85371 * 96.29156 * 10 9 8 39 39 H 1.08994 * 109.47231 * 66.86988 * 15 13 8 40 40 H 1.09008 * 109.46610 * 186.85878 * 15 13 8 41 41 H 1.09001 * 109.51721 * 188.22384 * 16 15 13 42 42 H 1.08992 * 109.56783 * 68.07251 * 16 15 13 43 43 H 1.09004 * 109.47679 * 204.58903 * 20 19 17 44 44 H 1.09008 * 109.47143 * 324.58572 * 20 19 17 45 45 H 1.09003 * 109.47273 * 304.96773 * 21 20 19 46 46 H 1.09007 * 109.46777 * 64.96173 * 21 20 19 47 47 H 0.97007 * 119.99531 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0645 0.0000 4 6 3.5464 0.6865 0.0047 5 6 3.5708 -0.6767 -0.0007 6 6 4.7636 -1.5311 -0.0005 7 8 5.8719 -1.0288 -0.0002 8 7 4.6318 -2.8724 -0.0003 9 6 3.3590 -3.6108 0.0004 10 6 3.7032 -5.1153 -0.0081 11 6 5.1466 -5.1406 -0.5841 12 1 5.6981 -6.0169 -0.2433 13 6 5.7347 -3.8430 -0.0006 14 1 6.0738 -4.0175 1.0204 15 6 6.8928 -3.3470 -0.8566 16 6 6.3778 -2.9827 -2.2503 17 6 5.5931 -4.1387 -2.8046 18 8 5.4428 -4.2150 -4.0057 19 7 5.0562 -5.0825 -2.0345 20 6 4.3127 -6.1526 -2.7041 21 6 5.2861 -7.2400 -3.1633 22 6 4.5391 -8.2802 -3.9576 23 1 3.4764 -8.1760 -4.1192 24 6 5.2125 -9.3650 -4.4781 25 7 4.5604 -10.2730 -5.1708 26 14 7.0505 -9.5457 -4.1980 27 1 7.2878 -10.3123 -2.9485 28 1 7.6573 -10.2680 -5.3449 29 1 7.6674 -8.2003 -4.0780 30 8 2.2817 -1.0892 -0.0005 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3634 0.8901 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 4.4055 1.3409 0.0099 35 1 2.7827 -3.3572 -0.8894 36 1 2.7862 -3.3665 0.8950 37 1 3.0198 -5.6635 -0.6565 38 1 3.6843 -5.5233 1.0025 39 1 7.3372 -2.4669 -0.3920 40 1 7.6446 -4.1319 -0.9407 41 1 7.2218 -2.7679 -2.9057 42 1 5.7354 -2.1047 -2.1840 43 1 3.5895 -6.5816 -2.0105 44 1 3.7890 -5.7450 -3.5689 45 1 6.0612 -6.7941 -3.7867 46 1 5.7450 -7.7081 -2.2924 47 1 5.0342 -11.0360 -5.5373 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272134030.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:04 Heat of formation + Delta-G solvation = -55.822393 kcal Electronic energy + Delta-G solvation = -32006.917538 eV Core-core repulsion = 27769.817023 eV Total energy + Delta-G solvation = -4237.100515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.53910 -42.50909 -40.48426 -38.79497 -36.62578 -36.09093 -35.17742 -34.74004 -33.24724 -32.55082 -31.32669 -29.73955 -28.98638 -27.09687 -25.75012 -24.68344 -23.69176 -23.06747 -22.81943 -22.42120 -21.09006 -19.38944 -19.14898 -18.63511 -18.23811 -17.86115 -17.65305 -17.29739 -16.91778 -16.75725 -16.43786 -15.90110 -15.37576 -15.13357 -15.00123 -14.88481 -14.82406 -14.59079 -14.55931 -14.29100 -13.96846 -13.90968 -13.76989 -13.63591 -13.37939 -13.06870 -12.90594 -12.73076 -12.54550 -12.39346 -12.25786 -12.10590 -12.07595 -11.93589 -11.90023 -11.63303 -11.49836 -11.30476 -10.78031 -10.59596 -10.17863 -9.77469 -9.70402 -8.31584 -6.35217 -0.32824 1.19943 1.27907 1.30189 1.35836 1.46881 1.59590 1.79641 1.90530 2.00260 2.33795 2.91222 3.04036 3.10432 3.37023 3.50525 3.60056 3.72390 3.78924 3.91919 4.01811 4.15799 4.24089 4.29732 4.32605 4.35251 4.46393 4.58334 4.61338 4.62389 4.65071 4.69831 4.75204 4.79541 4.85001 4.90564 4.92478 5.02850 5.06874 5.17602 5.21204 5.24368 5.36630 5.51943 5.66919 6.12227 6.23150 6.43899 6.51953 6.71346 6.76147 7.17237 7.29407 8.84944 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017660 B = 0.002996 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.138552 B = 9343.576372 C =10000.980316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.225 3.775 3 N -0.519 5.519 4 C 0.053 3.947 5 C -0.131 4.131 6 C 0.623 3.377 7 O -0.533 6.533 8 N -0.602 5.602 9 C 0.105 3.895 10 C -0.139 4.139 11 C 0.122 3.878 12 H 0.133 0.867 13 C 0.135 3.865 14 H 0.135 0.865 15 C -0.128 4.128 16 C -0.118 4.118 17 C 0.505 3.495 18 O -0.603 6.603 19 N -0.586 5.586 20 C 0.131 3.869 21 C -0.011 4.011 22 C -0.527 4.527 23 H 0.038 0.962 24 C 0.008 3.992 25 N -0.948 5.948 26 Si 0.948 3.052 27 H -0.252 1.252 28 H -0.287 1.287 29 H -0.264 1.264 30 O -0.187 6.187 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.206 0.794 35 H 0.053 0.947 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.129 0.871 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.101 0.899 44 H 0.043 0.957 45 H -0.004 1.004 46 H 0.032 0.968 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.464 19.235 21.341 29.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.021 3.979 3 N -0.248 5.248 4 C -0.090 4.090 5 C -0.186 4.186 6 C 0.412 3.588 7 O -0.413 6.413 8 N -0.335 5.335 9 C -0.017 4.017 10 C -0.177 4.177 11 C 0.019 3.981 12 H 0.150 0.850 13 C 0.033 3.967 14 H 0.153 0.847 15 C -0.165 4.165 16 C -0.158 4.158 17 C 0.294 3.706 18 O -0.485 6.485 19 N -0.316 5.316 20 C 0.009 3.991 21 C -0.049 4.049 22 C -0.566 4.566 23 H 0.056 0.944 24 C -0.189 4.189 25 N -0.588 5.588 26 Si 0.772 3.228 27 H -0.176 1.176 28 H -0.213 1.213 29 H -0.188 1.188 30 O -0.074 6.074 31 H 0.140 0.860 32 H 0.133 0.867 33 H 0.127 0.873 34 H 0.223 0.777 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.147 0.853 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.100 0.900 43 H 0.119 0.881 44 H 0.061 0.939 45 H 0.014 0.986 46 H 0.050 0.950 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.214 19.932 20.683 29.032 hybrid contribution 0.841 -0.924 -0.960 1.575 sum -3.373 19.008 19.724 27.599 Atomic orbital electron populations 1.20734 0.77458 1.06956 1.06930 1.27705 0.98307 0.77995 0.93934 1.70506 1.02177 1.30867 1.21269 1.23854 0.95727 0.92235 0.97167 1.22975 0.82762 0.95553 1.17302 1.15949 0.85553 0.80356 0.76968 1.90848 1.24204 1.73691 1.52527 1.48335 1.09626 1.04117 1.71394 1.22198 0.84873 0.92004 1.02599 1.23303 0.95401 0.94320 1.04682 1.22472 0.98694 0.99001 0.77981 0.84964 1.21953 0.86775 0.86093 1.01877 0.84712 1.21750 0.97828 1.04232 0.92717 1.21492 1.00166 0.95075 0.99070 1.20673 0.79534 0.84142 0.86244 1.90730 1.61983 1.78174 1.17630 1.47298 1.52481 1.24431 1.07427 1.21337 0.94391 0.86664 0.96757 1.19671 0.95708 0.93735 0.95779 1.21291 0.95703 1.06262 1.33296 0.94413 1.25919 1.03426 0.95230 0.94308 1.70051 1.38433 1.12940 1.37399 0.85687 0.79703 0.78684 0.78699 1.17591 1.21258 1.18839 1.84540 1.15889 1.37616 1.69393 0.86019 0.86687 0.87291 0.77692 0.92837 0.88566 0.89071 0.85265 0.87773 0.88791 0.88482 0.89975 0.88068 0.93870 0.98593 0.95007 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 71.24 0.75 0.38 16 2 C 0.23 3.65 8.32 88.29 0.73 4.39 16 3 N -0.52 -10.69 11.26 -302.89 -3.41 -14.10 16 4 C 0.05 1.12 11.66 83.97 0.98 2.10 16 5 C -0.13 -2.84 6.98 24.05 0.17 -2.67 16 6 C 0.62 14.15 6.32 86.46 0.55 14.70 16 7 O -0.53 -13.85 14.16 -4.30 -0.06 -13.91 16 8 N -0.60 -11.57 2.82 -796.72 -2.24 -13.81 16 9 C 0.11 1.70 5.53 86.71 0.48 2.18 16 10 C -0.14 -2.00 6.35 31.88 0.20 -1.80 16 11 C 0.12 2.36 3.66 46.34 0.17 2.53 16 12 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 13 C 0.14 2.31 3.27 45.00 0.15 2.46 16 14 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 15 C -0.13 -2.63 4.95 30.36 0.15 -2.48 16 16 C -0.12 -3.34 5.59 29.72 0.17 -3.18 16 17 C 0.50 18.36 7.34 87.79 0.64 19.01 16 18 O -0.60 -28.98 16.01 -3.05 -0.05 -29.03 16 19 N -0.59 -18.21 2.51 -796.76 -2.00 -20.21 16 20 C 0.13 5.07 4.73 86.38 0.41 5.48 16 21 C -0.01 -0.50 4.27 29.85 0.13 -0.38 16 22 C -0.53 -30.63 9.66 25.60 0.25 -30.38 16 23 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 24 C 0.01 0.49 5.47 84.66 0.46 0.96 16 25 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 26 Si 0.95 45.31 27.47 68.60 1.88 47.19 16 27 H -0.25 -10.94 7.11 99.48 0.71 -10.24 16 28 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 29 H -0.26 -12.43 6.54 99.48 0.65 -11.78 16 30 O -0.19 -3.52 8.52 -7.04 -0.06 -3.58 16 31 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.11 0.36 8.14 -2.38 -0.02 0.34 16 34 H 0.21 3.64 8.06 -2.91 -0.02 3.62 16 35 H 0.05 1.09 7.75 -2.39 -0.02 1.07 16 36 H 0.10 1.18 7.78 -2.39 -0.02 1.16 16 37 H 0.09 1.57 5.92 -2.39 -0.01 1.56 16 38 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.10 2.18 6.27 -2.39 -0.01 2.16 16 40 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 41 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 42 H 0.08 2.43 6.13 -2.39 -0.01 2.42 16 43 H 0.10 3.30 5.96 -2.39 -0.01 3.29 16 44 H 0.04 1.98 7.32 -2.38 -0.02 1.96 16 45 H 0.00 -0.23 6.92 -2.39 -0.02 -0.25 16 46 H 0.03 1.37 7.57 -2.38 -0.02 1.35 16 47 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 Total: -1.00 -84.68 373.17 1.69 -83.00 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.95 Total: 10.67 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 6.38 Total: 13.30 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -7.36 Total: -107.64 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: -0.17 Total: -46.52 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.88 Total: 47.19 kcal Total: -84.68 1.69 -83.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272134030.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.174 kcal (2) G-P(sol) polarization free energy of solvation -84.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds