Wall clock time and date at job start Wed Apr 1 2020 05:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29867 * 124.83393 * 2 1 4 4 C 1.36128 * 108.76846 * 180.02562 * 3 2 1 5 5 C 1.39266 * 133.76717 * 180.02562 * 4 3 2 6 6 C 1.39193 * 119.46935 * 180.02562 * 5 4 3 7 7 C 1.47710 * 119.95427 * 180.02562 * 6 5 4 8 8 O 1.21576 * 119.99747 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00182 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00081 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47155 * 179.97438 * 10 9 7 12 12 O 1.42903 * 109.47068 * 64.99745 * 11 10 9 13 13 C 1.42900 * 114.00154 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47395 * 180.02562 * 13 12 11 15 15 C 1.52994 * 109.47128 * 180.02562 * 14 13 12 16 16 N 1.46505 * 109.46803 * 179.97438 * 15 14 13 17 17 C 1.36940 * 119.99483 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00262 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99599 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00211 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99848 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47090 * 60.00193 * 21 19 17 23 23 H 1.48501 * 109.46915 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47176 * 299.99770 * 21 19 17 25 25 C 1.40051 * 120.09051 * 359.97438 * 6 5 4 26 26 C 1.36525 * 120.47836 * 0.02562 * 25 6 5 27 27 C 1.38897 * 120.18713 * 359.97438 * 26 25 6 28 28 O 1.34249 * 124.83327 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47316 * 90.00510 * 1 2 3 30 30 H 1.09006 * 109.47027 * 210.00184 * 1 2 3 31 31 H 1.09001 * 109.47451 * 329.99997 * 1 2 3 32 32 H 1.08000 * 120.26701 * 0.02562 * 5 4 3 33 33 H 0.96998 * 120.00163 * 359.97438 * 9 7 6 34 34 H 1.08999 * 109.47270 * 299.99438 * 10 9 7 35 35 H 1.09000 * 109.47486 * 59.99192 * 10 9 7 36 36 H 1.09003 * 109.47288 * 184.99753 * 11 10 9 37 37 H 1.09000 * 109.47482 * 304.99728 * 11 10 9 38 38 H 1.09005 * 109.47382 * 300.00522 * 13 12 11 39 39 H 1.09008 * 109.46848 * 60.00299 * 13 12 11 40 40 H 1.09004 * 109.46672 * 300.00277 * 14 13 12 41 41 H 1.08996 * 109.46908 * 59.99791 * 14 13 12 42 42 H 1.08994 * 109.47329 * 299.99593 * 15 14 13 43 43 H 1.09008 * 109.47252 * 60.00055 * 15 14 13 44 44 H 0.96997 * 120.00287 * 0.02562 * 16 15 14 45 45 H 0.97001 * 119.99709 * 179.97438 * 20 19 17 46 46 H 1.08003 * 119.75530 * 180.29369 * 25 6 5 47 47 H 1.08001 * 119.90321 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2488 1.0660 0.0000 4 6 3.5569 0.6892 -0.0006 5 6 4.7609 1.3891 -0.0004 6 6 5.9619 0.6855 -0.0017 7 6 7.2452 1.4170 -0.0010 8 8 7.2519 2.6327 0.0003 9 7 8.4087 0.7367 -0.0017 10 6 9.6814 1.4621 -0.0004 11 6 10.8388 0.4615 -0.0010 12 8 10.8273 -0.2795 -1.2228 13 6 11.8741 -1.2468 -1.3259 14 6 11.7648 -1.9756 -2.6667 15 6 12.8852 -3.0116 -2.7768 16 7 12.7802 -3.7099 -4.0605 17 6 13.6820 -4.6885 -4.3833 18 1 14.4704 -4.9458 -3.6915 19 6 13.5828 -5.3498 -5.5997 20 7 12.6217 -5.0365 -6.4427 21 14 14.8135 -6.6842 -6.0404 22 1 14.7444 -7.7734 -5.0333 23 1 14.4911 -7.2310 -7.3830 24 1 16.1826 -6.1097 -6.0551 25 6 5.9553 -0.7150 -0.0027 26 6 4.7754 -1.4019 -0.0028 27 6 3.5678 -0.7156 -0.0015 28 8 2.2738 -1.1019 0.0005 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 4.7628 2.4691 0.0008 33 1 8.4034 -0.2333 -0.0024 34 1 9.7429 2.0897 -0.8895 35 1 9.7424 2.0873 0.8904 36 1 11.7832 0.9982 0.0895 37 1 10.7279 -0.2229 0.8401 38 1 12.8398 -0.7452 -1.2631 39 1 11.7850 -1.9667 -0.5123 40 1 10.7991 -2.4771 -2.7299 41 1 11.8541 -1.2554 -3.4800 42 1 13.8510 -2.5104 -2.7135 43 1 12.7955 -3.7317 -1.9635 44 1 12.0719 -3.4790 -4.6817 45 1 12.5527 -5.4984 -7.2929 46 1 6.8903 -1.2555 0.0011 47 1 4.7811 -2.4818 -0.0040 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506994078.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:30 Heat of formation + Delta-G solvation = -36.690020 kcal Electronic energy + Delta-G solvation = -28183.326375 eV Core-core repulsion = 23947.055502 eV Total energy + Delta-G solvation = -4236.270873 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.75330 -40.35155 -38.40916 -37.83235 -35.54594 -35.36200 -34.79692 -32.50150 -32.17930 -31.35680 -30.33205 -29.30059 -28.24328 -25.18313 -24.70585 -23.06812 -22.60421 -22.53995 -22.07875 -21.25370 -20.87113 -18.84269 -18.05150 -17.35585 -17.18129 -17.00517 -16.82508 -16.53880 -15.89550 -15.36732 -15.18283 -14.69341 -14.63871 -14.37274 -14.23731 -14.17245 -13.83788 -13.67067 -13.56079 -13.37025 -13.16837 -13.08012 -13.04313 -12.64937 -12.23180 -12.06324 -11.77265 -11.71948 -11.34553 -10.96661 -10.92219 -10.78725 -10.73227 -10.63102 -10.33516 -10.10089 -9.72464 -9.68450 -9.48958 -9.21913 -9.00044 -8.88639 -6.94524 -5.77449 -3.06939 0.20990 0.28852 1.86807 1.94853 2.46034 2.71924 3.30951 3.33317 3.43310 3.45747 3.48475 3.50830 3.96926 4.25481 4.39686 4.48401 4.50637 4.57942 4.64869 4.76957 4.83132 4.84676 4.86645 5.05391 5.09400 5.21865 5.24821 5.34115 5.35277 5.51320 5.54682 5.55628 5.58166 5.66543 5.68495 5.73794 5.92170 5.96958 6.04236 6.09479 6.23364 6.33229 6.78676 6.83178 7.09359 7.11179 7.15457 7.67653 7.86263 8.41232 9.52124 10.09794 10.44459 11.45336 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010916 B = 0.001645 C = 0.001461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.430447 B =17013.713065 C =19160.218448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.249 3.751 3 N -0.475 5.475 4 C 0.013 3.987 5 C 0.005 3.995 6 C -0.135 4.135 7 C 0.564 3.436 8 O -0.536 6.536 9 N -0.717 5.717 10 C 0.123 3.877 11 C 0.047 3.953 12 O -0.387 6.387 13 C 0.068 3.932 14 C -0.125 4.125 15 C 0.156 3.844 16 N -0.733 5.733 17 C -0.243 4.243 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.933 5.933 21 Si 0.909 3.091 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.062 4.062 26 C -0.093 4.093 27 C 0.029 3.971 28 O -0.211 6.211 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.151 0.849 33 H 0.405 0.595 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.146 0.854 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.437 11.956 19.555 31.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.037 3.963 3 N -0.204 5.204 4 C -0.098 4.098 5 C -0.014 4.014 6 C -0.139 4.139 7 C 0.351 3.649 8 O -0.414 6.414 9 N -0.369 5.369 10 C 0.000 4.000 11 C -0.030 4.030 12 O -0.306 6.306 13 C -0.009 4.009 14 C -0.163 4.163 15 C 0.029 3.971 16 N -0.377 5.377 17 C -0.374 4.374 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.581 5.581 21 Si 0.740 3.260 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.081 4.081 26 C -0.112 4.112 27 C -0.022 4.022 28 O -0.103 6.103 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.169 0.831 33 H 0.241 0.759 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.037 0.963 43 H 0.036 0.964 44 H 0.218 0.782 45 H 0.066 0.934 46 H 0.164 0.836 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -21.606 13.357 19.409 31.967 hybrid contribution 0.927 -1.972 -0.359 2.208 sum -20.679 11.384 19.050 30.334 Atomic orbital electron populations 1.20462 0.80556 1.05766 1.05449 1.26565 0.96761 0.78059 0.94906 1.70669 1.00674 1.28891 1.20211 1.19720 0.92158 0.91196 1.06715 1.20383 0.87264 1.01117 0.92661 1.19722 0.93330 0.93532 1.07330 1.17959 0.83450 0.87038 0.76485 1.90802 1.87539 1.13233 1.49806 1.45801 1.05357 1.10784 1.74983 1.21451 0.80964 0.94171 1.03442 1.22727 0.98044 0.94273 0.87950 1.87932 1.52482 1.52780 1.37449 1.22518 0.89559 0.90062 0.98743 1.21671 1.00877 0.98327 0.95381 1.20512 0.94571 0.92073 0.89976 1.42328 1.35890 1.43190 1.16317 1.19190 1.06715 1.10989 1.00508 0.91186 1.24765 0.98861 1.00374 0.96983 1.69658 1.33785 1.44773 1.09927 0.86239 0.80704 0.81720 0.77342 1.21251 1.21645 1.21225 1.20892 0.97935 0.92761 0.96482 1.19563 0.86928 1.00915 1.03755 1.20536 0.83974 0.94461 1.03201 1.84501 1.15259 1.36361 1.74160 0.88088 0.88686 0.87485 0.83118 0.75886 0.90113 0.89742 0.91399 0.92604 0.93183 0.93256 0.91200 0.91130 0.96328 0.96352 0.78176 0.93408 0.83598 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.20 10.51 36.00 0.38 0.18 16 2 C 0.25 2.07 8.23 -13.11 -0.11 1.96 16 3 N -0.47 -5.23 11.34 -8.73 -0.10 -5.32 16 4 C 0.01 0.15 7.23 -84.73 -0.61 -0.46 16 5 C 0.01 0.06 9.64 -38.84 -0.37 -0.32 16 6 C -0.13 -1.33 5.87 -104.99 -0.62 -1.95 16 7 C 0.56 6.28 7.77 -12.39 -0.10 6.18 16 8 O -0.54 -7.72 16.33 5.30 0.09 -7.64 16 9 N -0.72 -6.45 5.45 -61.29 -0.33 -6.78 16 10 C 0.12 1.07 6.06 -4.04 -0.02 1.04 16 11 C 0.05 0.39 6.07 37.16 0.23 0.61 16 12 O -0.39 -4.55 10.29 -35.23 -0.36 -4.91 16 13 C 0.07 0.84 5.94 37.16 0.22 1.06 16 14 C -0.12 -2.00 5.70 -26.73 -0.15 -2.16 16 15 C 0.16 3.10 6.26 -4.04 -0.03 3.08 16 16 N -0.73 -18.82 5.60 -59.91 -0.34 -19.16 16 17 C -0.24 -6.86 9.99 -15.06 -0.15 -7.02 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 21 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 C -0.06 -0.48 9.47 -39.52 -0.37 -0.85 16 26 C -0.09 -0.74 9.99 -39.96 -0.40 -1.14 16 27 C 0.03 0.30 7.43 -38.49 -0.29 0.01 16 28 O -0.21 -2.01 10.77 3.78 0.04 -1.96 16 29 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 31 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.15 1.66 7.64 -52.49 -0.40 1.26 16 33 H 0.40 2.90 6.48 -40.82 -0.26 2.64 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 44 H 0.38 10.39 7.67 -40.82 -0.31 10.08 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.15 0.73 6.37 -52.48 -0.33 0.40 16 47 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 403.56 15.07 6.08 6.08 Total: -1.00 -36.59 403.56 -8.49 -45.08 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.78 Total: 5.22 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -2.49 Total: -0.26 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.04 Total: -58.98 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.24 Total: -14.51 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.59 -8.49 -45.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506994078.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.392 kcal (2) G-P(sol) polarization free energy of solvation -36.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds