Wall clock time and date at job start Wed Apr 1 2020 05:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29867 * 124.83393 * 2 1 4 4 C 1.36128 * 108.76846 * 180.02562 * 3 2 1 5 5 C 1.39266 * 133.76717 * 180.02562 * 4 3 2 6 6 C 1.39193 * 119.46935 * 180.02562 * 5 4 3 7 7 C 1.47710 * 119.95427 * 180.02562 * 6 5 4 8 8 O 1.21576 * 119.99747 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00182 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00081 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47155 * 179.97438 * 10 9 7 12 12 O 1.42903 * 109.47068 * 64.99745 * 11 10 9 13 13 C 1.42900 * 114.00154 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47395 * 180.02562 * 13 12 11 15 15 C 1.52994 * 109.47128 * 180.02562 * 14 13 12 16 16 N 1.46505 * 109.46803 * 179.97438 * 15 14 13 17 17 C 1.36940 * 119.99483 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00262 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99599 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00211 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99848 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47090 * 60.00193 * 21 19 17 23 23 H 1.48501 * 109.46915 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47176 * 299.99770 * 21 19 17 25 25 C 1.40051 * 120.09051 * 359.97438 * 6 5 4 26 26 C 1.36525 * 120.47836 * 0.02562 * 25 6 5 27 27 C 1.38897 * 120.18713 * 359.97438 * 26 25 6 28 28 O 1.34249 * 124.83327 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47316 * 90.00510 * 1 2 3 30 30 H 1.09006 * 109.47027 * 210.00184 * 1 2 3 31 31 H 1.09001 * 109.47451 * 329.99997 * 1 2 3 32 32 H 1.08000 * 120.26701 * 0.02562 * 5 4 3 33 33 H 0.96998 * 120.00163 * 359.97438 * 9 7 6 34 34 H 1.08999 * 109.47270 * 299.99438 * 10 9 7 35 35 H 1.09000 * 109.47486 * 59.99192 * 10 9 7 36 36 H 1.09003 * 109.47288 * 184.99753 * 11 10 9 37 37 H 1.09000 * 109.47482 * 304.99728 * 11 10 9 38 38 H 1.09005 * 109.47382 * 300.00522 * 13 12 11 39 39 H 1.09008 * 109.46848 * 60.00299 * 13 12 11 40 40 H 1.09004 * 109.46672 * 300.00277 * 14 13 12 41 41 H 1.08996 * 109.46908 * 59.99791 * 14 13 12 42 42 H 1.08994 * 109.47329 * 299.99593 * 15 14 13 43 43 H 1.09008 * 109.47252 * 60.00055 * 15 14 13 44 44 H 0.96997 * 120.00287 * 0.02562 * 16 15 14 45 45 H 0.97001 * 119.99709 * 179.97438 * 20 19 17 46 46 H 1.08003 * 119.75530 * 180.29369 * 25 6 5 47 47 H 1.08001 * 119.90321 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2488 1.0660 0.0000 4 6 3.5569 0.6892 -0.0006 5 6 4.7609 1.3891 -0.0004 6 6 5.9619 0.6855 -0.0017 7 6 7.2452 1.4170 -0.0010 8 8 7.2519 2.6327 0.0003 9 7 8.4087 0.7367 -0.0017 10 6 9.6814 1.4621 -0.0004 11 6 10.8388 0.4615 -0.0010 12 8 10.8273 -0.2795 -1.2228 13 6 11.8741 -1.2468 -1.3259 14 6 11.7648 -1.9756 -2.6667 15 6 12.8852 -3.0116 -2.7768 16 7 12.7802 -3.7099 -4.0605 17 6 13.6820 -4.6885 -4.3833 18 1 14.4704 -4.9458 -3.6915 19 6 13.5828 -5.3498 -5.5997 20 7 12.6217 -5.0365 -6.4427 21 14 14.8135 -6.6842 -6.0404 22 1 14.7444 -7.7734 -5.0333 23 1 14.4911 -7.2310 -7.3830 24 1 16.1826 -6.1097 -6.0551 25 6 5.9553 -0.7150 -0.0027 26 6 4.7754 -1.4019 -0.0028 27 6 3.5678 -0.7156 -0.0015 28 8 2.2738 -1.1019 0.0005 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 4.7628 2.4691 0.0008 33 1 8.4034 -0.2333 -0.0024 34 1 9.7429 2.0897 -0.8895 35 1 9.7424 2.0873 0.8904 36 1 11.7832 0.9982 0.0895 37 1 10.7279 -0.2229 0.8401 38 1 12.8398 -0.7452 -1.2631 39 1 11.7850 -1.9667 -0.5123 40 1 10.7991 -2.4771 -2.7299 41 1 11.8541 -1.2554 -3.4800 42 1 13.8510 -2.5104 -2.7135 43 1 12.7955 -3.7317 -1.9635 44 1 12.0719 -3.4790 -4.6817 45 1 12.5527 -5.4984 -7.2929 46 1 6.8903 -1.2555 0.0011 47 1 4.7811 -2.4818 -0.0040 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506994078.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:29 Heat of formation + Delta-G solvation = -65.119618 kcal Electronic energy + Delta-G solvation = -28184.559175 eV Core-core repulsion = 23947.055502 eV Total energy + Delta-G solvation = -4237.503673 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.43780 -41.18109 -39.24196 -38.63177 -37.03156 -36.12443 -35.86103 -34.12044 -32.86548 -32.07237 -31.69162 -30.37564 -28.89826 -26.78992 -25.51466 -24.26414 -23.73224 -23.27132 -22.74634 -22.28749 -22.05075 -19.59985 -19.12147 -18.75387 -18.04543 -17.90448 -17.64873 -17.31226 -16.83185 -16.61858 -16.21161 -15.92733 -15.51829 -15.36560 -15.24536 -15.11475 -14.96053 -14.72630 -14.46303 -14.20393 -14.15609 -13.96714 -13.47985 -13.44734 -13.27561 -13.13191 -12.76630 -12.74078 -12.58195 -12.41876 -12.39866 -12.07967 -11.99867 -11.90674 -11.73703 -11.68461 -11.25307 -10.92217 -10.51382 -10.30942 -9.95016 -9.68801 -9.01297 -7.95181 -5.25129 -0.50332 -0.43137 1.21124 1.33437 1.48432 1.51966 1.58165 1.64276 1.96939 2.51555 2.56879 2.67437 2.76223 3.26127 3.38520 3.54391 3.80020 3.82414 3.86516 3.95766 4.07997 4.12221 4.15309 4.23447 4.39816 4.45236 4.54802 4.55623 4.59387 4.60509 4.65752 4.76640 4.77570 4.79533 4.83994 4.87546 4.90472 4.97212 5.02486 5.19202 5.28166 5.35201 5.36288 5.37153 5.49687 6.25075 6.29445 6.39718 6.42515 7.06027 7.32725 8.08884 8.31163 9.28366 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010916 B = 0.001645 C = 0.001461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.430447 B =17013.713065 C =19160.218448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.256 3.744 3 N -0.515 5.515 4 C -0.008 4.008 5 C -0.015 4.015 6 C -0.138 4.138 7 C 0.562 3.438 8 O -0.577 6.577 9 N -0.705 5.705 10 C 0.122 3.878 11 C 0.049 3.951 12 O -0.407 6.407 13 C 0.078 3.922 14 C -0.114 4.114 15 C 0.154 3.846 16 N -0.750 5.750 17 C -0.250 4.250 18 H 0.079 0.921 19 C -0.078 4.078 20 N -0.971 5.971 21 Si 0.978 3.022 22 H -0.275 1.275 23 H -0.296 1.296 24 H -0.277 1.277 25 C -0.055 4.055 26 C -0.086 4.086 27 C 0.014 3.986 28 O -0.216 6.216 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.136 0.864 33 H 0.416 0.584 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.024 0.976 43 H 0.029 0.971 44 H 0.373 0.627 45 H 0.252 0.748 46 H 0.178 0.822 47 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.963 10.312 21.162 31.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.045 3.955 3 N -0.245 5.245 4 C -0.119 4.119 5 C -0.035 4.035 6 C -0.142 4.142 7 C 0.350 3.650 8 O -0.458 6.458 9 N -0.357 5.357 10 C -0.001 4.001 11 C -0.027 4.027 12 O -0.327 6.327 13 C 0.001 3.999 14 C -0.152 4.152 15 C 0.028 3.972 16 N -0.393 5.393 17 C -0.382 4.382 18 H 0.097 0.903 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.806 3.194 22 H -0.201 1.201 23 H -0.222 1.222 24 H -0.203 1.203 25 C -0.073 4.073 26 C -0.105 4.105 27 C -0.037 4.037 28 O -0.108 6.108 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.154 0.846 33 H 0.254 0.746 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.042 0.958 43 H 0.047 0.953 44 H 0.204 0.796 45 H 0.060 0.940 46 H 0.195 0.805 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -21.102 11.706 21.069 32.035 hybrid contribution 0.719 -1.407 -0.794 1.768 sum -20.383 10.300 20.275 30.539 Atomic orbital electron populations 1.20807 0.76956 1.07379 1.06998 1.27646 0.98338 0.77209 0.92283 1.70665 1.00980 1.30360 1.22499 1.19912 0.92403 0.92168 1.07411 1.20346 0.88084 1.00644 0.94432 1.19720 0.92293 0.94588 1.07599 1.18165 0.84303 0.86613 0.75929 1.90777 1.88102 1.15002 1.51932 1.45763 1.04922 1.11339 1.73680 1.21512 0.81009 0.94431 1.03188 1.22881 0.98284 0.94348 0.87225 1.87887 1.52278 1.53016 1.39480 1.22312 0.90251 0.90567 0.96730 1.21483 0.99001 0.97267 0.97495 1.20688 0.96190 0.92768 0.87591 1.42602 1.35157 1.43364 1.18169 1.19653 1.06923 1.11033 1.00584 0.90295 1.25643 1.01012 1.03119 0.97205 1.69826 1.35852 1.46264 1.10220 0.85155 0.78524 0.79014 0.76717 1.20109 1.22229 1.20278 1.21188 0.99234 0.91637 0.95266 1.19955 0.86024 1.02298 1.02180 1.20892 0.84880 0.94183 1.03727 1.84514 1.15115 1.36793 1.74340 0.86312 0.86358 0.86472 0.84638 0.74599 0.92019 0.88462 0.89794 0.90156 0.92137 0.91197 0.91856 0.92725 0.95809 0.95270 0.79555 0.93965 0.80527 0.80846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.29 10.51 71.23 0.75 0.46 16 2 C 0.26 4.19 8.23 88.40 0.73 4.91 16 3 N -0.51 -11.83 11.34 -296.35 -3.36 -15.19 16 4 C -0.01 -0.20 7.23 39.27 0.28 0.08 16 5 C -0.02 -0.36 9.64 22.75 0.22 -0.14 16 6 C -0.14 -2.76 5.87 -20.10 -0.12 -2.88 16 7 C 0.56 12.63 7.77 86.75 0.67 13.31 16 8 O -0.58 -17.41 16.33 -3.95 -0.06 -17.48 16 9 N -0.70 -11.75 5.45 -466.10 -2.54 -14.29 16 10 C 0.12 1.94 6.06 86.38 0.52 2.46 16 11 C 0.05 0.65 6.07 71.98 0.44 1.09 16 12 O -0.41 -8.52 10.29 -148.98 -1.53 -10.05 16 13 C 0.08 1.69 5.94 71.98 0.43 2.12 16 14 C -0.11 -3.52 5.70 30.59 0.17 -3.35 16 15 C 0.15 5.88 6.26 86.38 0.54 6.42 16 16 N -0.75 -38.36 5.60 -343.45 -1.92 -40.28 16 17 C -0.25 -13.99 9.99 84.03 0.84 -13.15 16 18 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 19 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 20 N -0.97 -59.84 13.06 21.65 0.28 -59.56 16 21 Si 0.98 45.76 29.55 68.60 2.03 47.78 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 25 C -0.05 -0.76 9.47 22.31 0.21 -0.55 16 26 C -0.09 -1.24 9.99 22.03 0.22 -1.02 16 27 C 0.01 0.29 7.43 22.98 0.17 0.46 16 28 O -0.22 -3.96 10.77 -9.39 -0.10 -4.06 16 29 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.12 0.00 8.14 -2.38 -0.02 -0.02 16 31 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.14 3.45 7.64 -2.91 -0.02 3.43 16 33 H 0.42 4.94 6.48 -92.71 -0.60 4.34 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.37 20.43 7.67 -92.71 -0.71 19.72 16 45 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 46 H 0.18 1.23 6.37 -2.91 -0.02 1.22 16 47 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -81.27 403.56 -0.97 -82.23 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: -0.30 Total: 24.65 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 6.55 Total: 6.24 kcal Atomic # 7 Polarization: -121.77 SS G_CDS: -7.54 Total: -129.32 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -1.70 Total: -31.59 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -81.27 -0.97 -82.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506994078.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.115 kcal (2) G-P(sol) polarization free energy of solvation -81.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds