Wall clock time and date at job start Wed Apr 1 2020 04:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34185 * 127.01993 * 2 1 4 4 O 1.34221 * 109.12010 * 180.26444 * 3 2 1 5 5 C 1.33653 * 110.90725 * 359.74935 * 4 3 2 6 6 C 1.50698 * 125.79818 * 179.97438 * 5 4 3 7 7 C 1.36410 * 108.39885 * 359.97438 * 5 4 3 8 8 C 1.47378 * 127.19136 * 179.97438 * 7 5 4 9 9 O 1.21618 * 119.99898 * 90.02766 * 8 7 5 10 10 N 1.34782 * 120.00312 * 270.02294 * 8 7 5 11 11 C 1.47860 * 126.92558 * 0.04587 * 10 8 7 12 12 C 1.56015 * 105.11405 * 181.89659 * 11 10 8 13 13 H 1.09002 * 116.26138 * 158.85456 * 12 11 10 14 14 C 1.57084 * 99.59731 * 32.80664 * 12 11 10 15 15 C 1.49273 * 126.92640 * 179.97438 * 10 8 7 16 16 H 1.09006 * 116.12670 * 16.89832 * 15 10 8 17 17 C 1.56011 * 104.13190 * 247.78365 * 15 10 8 18 18 N 1.49709 * 104.08463 * 287.95247 * 12 11 10 19 19 C 1.46897 * 111.00193 * 306.12242 * 18 12 11 20 20 C 1.50693 * 109.47087 * 301.52283 * 19 18 12 21 21 O 1.21299 * 120.00299 * 359.97438 * 20 19 18 22 22 N 1.34781 * 119.99843 * 179.97438 * 20 19 18 23 23 C 1.37094 * 119.99848 * 179.97438 * 22 20 19 24 24 H 1.08003 * 120.00347 * 0.02562 * 23 22 20 25 25 C 1.38955 * 120.00077 * 179.97438 * 23 22 20 26 26 N 1.31409 * 119.99927 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 120.00133 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.46722 * 90.00140 * 27 25 23 29 29 H 1.48493 * 109.46900 * 210.00396 * 27 25 23 30 30 H 1.48506 * 109.47096 * 330.00518 * 27 25 23 31 31 H 1.08997 * 109.46604 * 270.13666 * 1 2 3 32 32 H 1.09002 * 109.46671 * 30.13528 * 1 2 3 33 33 H 1.09000 * 109.47123 * 150.13451 * 1 2 3 34 34 H 1.07996 * 125.43901 * 0.02562 * 3 2 1 35 35 H 1.09000 * 109.47452 * 270.00025 * 6 5 4 36 36 H 1.09007 * 109.47366 * 30.00562 * 6 5 4 37 37 H 1.09002 * 109.47328 * 150.00166 * 6 5 4 38 38 H 1.09000 * 110.31234 * 300.80665 * 11 10 8 39 39 H 1.09006 * 110.31315 * 62.88409 * 11 10 8 40 40 H 1.09000 * 113.07812 * 191.53668 * 14 12 11 41 41 H 1.09001 * 111.64013 * 64.12902 * 14 12 11 42 42 H 1.09000 * 110.32061 * 46.85699 * 17 15 10 43 43 H 1.08997 * 110.32551 * 169.06305 * 17 15 10 44 44 H 1.09004 * 109.46861 * 61.51915 * 19 18 12 45 45 H 1.08994 * 109.46982 * 181.52053 * 19 18 12 46 46 H 0.96999 * 119.99908 * 359.97438 * 22 20 19 47 47 H 0.96992 * 120.00159 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0714 0.0000 4 8 3.5922 0.6588 -0.0059 5 6 3.6623 -0.6759 -0.0044 6 6 4.9292 -1.4920 -0.0101 7 6 2.3924 -1.1737 0.0033 8 6 1.9915 -2.5919 0.0070 9 8 1.8315 -3.1759 1.0617 10 7 1.8020 -3.2418 -1.1585 11 6 1.9534 -2.6859 -2.5203 12 6 1.5666 -3.8526 -3.4812 13 1 1.2686 -3.5677 -4.4903 14 6 0.4765 -4.5650 -2.6027 15 6 1.3985 -4.6681 -1.3348 16 1 0.9694 -5.1571 -0.4602 17 6 2.6590 -5.3467 -1.9548 18 7 2.7155 -4.8067 -3.3769 19 6 3.9897 -4.1281 -3.6486 20 6 3.9509 -3.5198 -5.0268 21 8 2.9595 -3.6401 -5.7152 22 7 5.0179 -2.8420 -5.4945 23 6 4.9828 -2.2890 -6.7485 24 1 4.1000 -2.3962 -7.3615 25 6 6.0826 -1.5898 -7.2305 26 7 7.1565 -1.4589 -6.4845 27 14 6.0345 -0.8357 -8.9389 28 1 5.5041 0.5488 -8.8541 29 1 7.4067 -0.8064 -9.5057 30 1 5.1543 -1.6502 -9.8149 31 1 -0.3632 0.0025 1.0277 32 1 -0.3633 0.8888 -0.5160 33 1 -0.3633 -0.8912 -0.5117 34 1 1.9895 2.1011 0.0004 35 1 5.2290 -1.6902 -1.0392 36 1 5.7194 -0.9399 0.4987 37 1 4.7555 -2.4362 0.5059 38 1 1.2798 -1.8406 -2.6610 39 1 2.9853 -2.3792 -2.6913 40 1 0.1901 -5.5437 -2.9877 41 1 -0.3881 -3.9225 -2.4357 42 1 3.5545 -5.0552 -1.4058 43 1 2.5467 -6.4309 -1.9491 44 1 4.1481 -3.3429 -2.9093 45 1 4.8047 -4.8496 -3.5927 46 1 5.8105 -2.7454 -4.9438 47 1 7.9240 -0.9705 -6.8208 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665387755.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:45 Heat of formation + Delta-G solvation = -5.739250 kcal Electronic energy + Delta-G solvation = -32062.884149 eV Core-core repulsion = 27827.955402 eV Total energy + Delta-G solvation = -4234.928747 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.65120 -41.03377 -38.61826 -37.75566 -34.22466 -34.06011 -33.43204 -32.65249 -31.39920 -30.82973 -29.66060 -28.29143 -26.72581 -26.49455 -25.12108 -24.23871 -23.12628 -20.91045 -20.47298 -19.92739 -19.31104 -18.67947 -17.91278 -17.65109 -16.73651 -16.33927 -16.25056 -15.88731 -15.46638 -14.90966 -14.71917 -14.52107 -13.98626 -13.90712 -13.81915 -13.51300 -13.43485 -13.17737 -13.05289 -12.95722 -12.79613 -12.65773 -12.50807 -12.45800 -12.05234 -11.80628 -11.60485 -11.49209 -11.41355 -11.38374 -11.25575 -11.04496 -10.89091 -10.43266 -10.27238 -10.13179 -9.54854 -9.51470 -8.73846 -8.57495 -8.43639 -8.05907 -7.96710 -6.47381 -3.88308 1.53083 2.09354 2.44669 2.71000 2.96774 3.13607 3.23270 3.28529 3.79015 3.84395 4.16075 4.29362 4.36081 4.52358 4.62774 4.67523 4.79573 4.93808 5.00274 5.02753 5.12879 5.17300 5.27348 5.33522 5.42205 5.42791 5.44233 5.51807 5.54677 5.63319 5.66309 5.73838 5.75698 5.81463 5.85643 5.87670 6.01954 6.04706 6.13522 6.19525 6.29176 6.37836 6.86174 6.96364 7.10624 7.44238 7.49911 7.99535 8.06479 8.54353 9.11864 9.47048 9.97867 10.70136 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010253 B = 0.003802 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.171547 B = 7361.940405 C = 8807.142670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.150 4.150 3 C -0.039 4.039 4 O -0.170 6.170 5 C 0.048 3.952 6 C -0.083 4.083 7 C -0.227 4.227 8 C 0.613 3.387 9 O -0.540 6.540 10 N -0.611 5.611 11 C 0.061 3.939 12 C 0.070 3.930 13 H 0.156 0.844 14 C -0.135 4.135 15 C 0.108 3.892 16 H 0.124 0.876 17 C 0.023 3.977 18 N -0.490 5.490 19 C 0.030 3.970 20 C 0.443 3.557 21 O -0.580 6.580 22 N -0.560 5.560 23 C -0.300 4.300 24 H 0.104 0.896 25 C 0.024 3.976 26 N -0.900 5.900 27 Si 0.929 3.071 28 H -0.278 1.278 29 H -0.283 1.283 30 H -0.269 1.269 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.207 0.793 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.061 0.939 43 H 0.093 0.907 44 H 0.052 0.948 45 H 0.090 0.910 46 H 0.391 0.609 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.591 0.759 13.642 16.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.152 4.152 3 C -0.105 4.105 4 O -0.067 6.067 5 C -0.004 4.004 6 C -0.139 4.139 7 C -0.231 4.231 8 C 0.401 3.599 9 O -0.417 6.417 10 N -0.345 5.345 11 C -0.062 4.062 12 C -0.038 4.038 13 H 0.173 0.827 14 C -0.174 4.174 15 C 0.006 3.994 16 H 0.142 0.858 17 C -0.105 4.105 18 N -0.214 5.214 19 C -0.102 4.102 20 C 0.228 3.772 21 O -0.465 6.465 22 N -0.197 5.197 23 C -0.429 4.429 24 H 0.122 0.878 25 C -0.178 4.178 26 N -0.541 5.541 27 Si 0.756 3.244 28 H -0.204 1.204 29 H -0.209 1.209 30 H -0.194 1.194 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.223 0.777 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.111 0.889 44 H 0.069 0.931 45 H 0.108 0.892 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.896 0.282 13.377 16.068 hybrid contribution 0.687 1.329 0.094 1.499 sum -8.209 1.611 13.471 15.857 Atomic orbital electron populations 1.20164 0.88723 1.02772 1.02323 1.21288 0.96722 0.90504 1.06637 1.23608 0.79658 0.99495 1.07725 1.83735 1.29527 1.21821 1.71580 1.22511 0.95985 0.80850 1.01042 1.20475 0.91242 0.97721 1.04480 1.20891 0.93237 0.93695 1.15269 1.16912 0.76251 0.84460 0.82251 1.90784 1.52102 1.68418 1.30429 1.49313 1.67350 1.12246 1.05597 1.23388 1.02796 0.98709 0.81333 1.24907 0.90626 0.89004 0.99242 0.82692 1.23986 0.96904 1.02214 0.94287 1.24069 0.95556 0.81507 0.98300 0.85776 1.24409 0.96967 1.00385 0.88730 1.65794 1.01738 1.32474 1.21422 1.22189 0.93103 0.98069 0.96802 1.19626 0.85172 0.84137 0.88248 1.90462 1.32975 1.63596 1.59471 1.41852 1.14557 1.46990 1.16252 1.19689 1.01837 1.29623 0.91754 0.87845 1.25256 0.94971 0.97649 0.99892 1.69601 1.04757 1.42077 1.37678 0.85875 0.77501 0.79309 0.81730 1.20419 1.20904 1.19353 0.91151 0.91077 0.91632 0.77686 0.89030 0.89573 0.89281 0.91097 0.90084 0.88465 0.90144 0.92068 0.88882 0.93057 0.89183 0.77542 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.38 36.01 0.37 -0.46 16 2 C -0.15 -1.88 6.38 -102.49 -0.65 -2.53 16 3 C -0.04 -0.43 11.96 29.30 0.35 -0.08 16 4 O -0.17 -2.25 10.52 7.63 0.08 -2.17 16 5 C 0.05 0.65 7.37 -34.97 -0.26 0.40 16 6 C -0.08 -0.92 10.24 36.00 0.37 -0.56 16 7 C -0.23 -3.28 5.35 -103.28 -0.55 -3.83 16 8 C 0.61 9.44 7.33 -12.54 -0.09 9.35 16 9 O -0.54 -9.75 17.45 5.26 0.09 -9.66 16 10 N -0.61 -8.44 2.93 -158.05 -0.46 -8.91 16 11 C 0.06 0.89 5.61 -1.68 -0.01 0.88 16 12 C 0.07 1.05 4.13 -62.31 -0.26 0.79 16 13 H 0.16 2.72 6.35 -51.93 -0.33 2.39 16 14 C -0.14 -1.59 6.83 -22.29 -0.15 -1.74 16 15 C 0.11 1.33 5.17 -62.55 -0.32 1.00 16 16 H 0.12 1.42 8.06 -51.93 -0.42 1.01 16 17 C 0.02 0.29 6.50 0.83 0.01 0.30 16 18 N -0.49 -7.63 5.26 -214.66 -1.13 -8.76 16 19 C 0.03 0.51 4.79 -4.98 -0.02 0.48 16 20 C 0.44 9.76 7.44 -10.99 -0.08 9.68 16 21 O -0.58 -14.39 13.57 5.54 0.08 -14.32 16 22 N -0.56 -13.48 5.29 -10.96 -0.06 -13.54 16 23 C -0.30 -7.99 9.68 -14.93 -0.14 -8.14 16 24 H 0.10 2.89 7.16 -52.48 -0.38 2.52 16 25 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 26 N -0.90 -23.73 13.05 55.50 0.72 -23.00 16 27 Si 0.93 20.45 29.55 -169.99 -5.02 15.42 16 28 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 29 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 30 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.21 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.98 7.93 -51.93 -0.41 0.57 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.08 1.30 5.19 -51.93 -0.27 1.03 16 40 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.79 7.71 -51.93 -0.40 0.38 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 0.82 5.65 -51.93 -0.29 0.52 16 45 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 46 H 0.39 9.08 7.90 -40.82 -0.32 8.76 16 47 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 387.33 15.07 5.84 5.84 Total: -1.00 -32.31 387.33 -8.02 -40.33 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -6.61 Total: 12.69 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -1.55 Total: 6.08 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.93 Total: -54.21 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: 0.25 Total: -26.15 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.31 -8.02 -40.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665387755.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.591 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds