Wall clock time and date at job start Wed Apr 1 2020 04:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34185 * 127.01993 * 2 1 4 4 O 1.34221 * 109.12010 * 180.26444 * 3 2 1 5 5 C 1.33653 * 110.90725 * 359.74935 * 4 3 2 6 6 C 1.50698 * 125.79818 * 179.97438 * 5 4 3 7 7 C 1.36410 * 108.39885 * 359.97438 * 5 4 3 8 8 C 1.47378 * 127.19136 * 179.97438 * 7 5 4 9 9 O 1.21618 * 119.99898 * 90.02766 * 8 7 5 10 10 N 1.34782 * 120.00312 * 270.02294 * 8 7 5 11 11 C 1.47860 * 126.92558 * 0.04587 * 10 8 7 12 12 C 1.56015 * 105.11405 * 181.89659 * 11 10 8 13 13 H 1.09002 * 116.26138 * 158.85456 * 12 11 10 14 14 C 1.57084 * 99.59731 * 32.80664 * 12 11 10 15 15 C 1.49273 * 126.92640 * 179.97438 * 10 8 7 16 16 H 1.09006 * 116.12670 * 16.89832 * 15 10 8 17 17 C 1.56011 * 104.13190 * 247.78365 * 15 10 8 18 18 N 1.49709 * 104.08463 * 287.95247 * 12 11 10 19 19 C 1.46897 * 111.00193 * 306.12242 * 18 12 11 20 20 C 1.50693 * 109.47087 * 301.52283 * 19 18 12 21 21 O 1.21299 * 120.00299 * 359.97438 * 20 19 18 22 22 N 1.34781 * 119.99843 * 179.97438 * 20 19 18 23 23 C 1.37094 * 119.99848 * 179.97438 * 22 20 19 24 24 H 1.08003 * 120.00347 * 0.02562 * 23 22 20 25 25 C 1.38955 * 120.00077 * 179.97438 * 23 22 20 26 26 N 1.31409 * 119.99927 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 120.00133 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.46722 * 90.00140 * 27 25 23 29 29 H 1.48493 * 109.46900 * 210.00396 * 27 25 23 30 30 H 1.48506 * 109.47096 * 330.00518 * 27 25 23 31 31 H 1.08997 * 109.46604 * 270.13666 * 1 2 3 32 32 H 1.09002 * 109.46671 * 30.13528 * 1 2 3 33 33 H 1.09000 * 109.47123 * 150.13451 * 1 2 3 34 34 H 1.07996 * 125.43901 * 0.02562 * 3 2 1 35 35 H 1.09000 * 109.47452 * 270.00025 * 6 5 4 36 36 H 1.09007 * 109.47366 * 30.00562 * 6 5 4 37 37 H 1.09002 * 109.47328 * 150.00166 * 6 5 4 38 38 H 1.09000 * 110.31234 * 300.80665 * 11 10 8 39 39 H 1.09006 * 110.31315 * 62.88409 * 11 10 8 40 40 H 1.09000 * 113.07812 * 191.53668 * 14 12 11 41 41 H 1.09001 * 111.64013 * 64.12902 * 14 12 11 42 42 H 1.09000 * 110.32061 * 46.85699 * 17 15 10 43 43 H 1.08997 * 110.32551 * 169.06305 * 17 15 10 44 44 H 1.09004 * 109.46861 * 61.51915 * 19 18 12 45 45 H 1.08994 * 109.46982 * 181.52053 * 19 18 12 46 46 H 0.96999 * 119.99908 * 359.97438 * 22 20 19 47 47 H 0.96992 * 120.00159 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0714 0.0000 4 8 3.5922 0.6588 -0.0059 5 6 3.6623 -0.6759 -0.0044 6 6 4.9292 -1.4920 -0.0101 7 6 2.3924 -1.1737 0.0033 8 6 1.9915 -2.5919 0.0070 9 8 1.8315 -3.1759 1.0617 10 7 1.8020 -3.2418 -1.1585 11 6 1.9534 -2.6859 -2.5203 12 6 1.5666 -3.8526 -3.4812 13 1 1.2686 -3.5677 -4.4903 14 6 0.4765 -4.5650 -2.6027 15 6 1.3985 -4.6681 -1.3348 16 1 0.9694 -5.1571 -0.4602 17 6 2.6590 -5.3467 -1.9548 18 7 2.7155 -4.8067 -3.3769 19 6 3.9897 -4.1281 -3.6486 20 6 3.9509 -3.5198 -5.0268 21 8 2.9595 -3.6401 -5.7152 22 7 5.0179 -2.8420 -5.4945 23 6 4.9828 -2.2890 -6.7485 24 1 4.1000 -2.3962 -7.3615 25 6 6.0826 -1.5898 -7.2305 26 7 7.1565 -1.4589 -6.4845 27 14 6.0345 -0.8357 -8.9389 28 1 5.5041 0.5488 -8.8541 29 1 7.4067 -0.8064 -9.5057 30 1 5.1543 -1.6502 -9.8149 31 1 -0.3632 0.0025 1.0277 32 1 -0.3633 0.8888 -0.5160 33 1 -0.3633 -0.8912 -0.5117 34 1 1.9895 2.1011 0.0004 35 1 5.2290 -1.6902 -1.0392 36 1 5.7194 -0.9399 0.4987 37 1 4.7555 -2.4362 0.5059 38 1 1.2798 -1.8406 -2.6610 39 1 2.9853 -2.3792 -2.6913 40 1 0.1901 -5.5437 -2.9877 41 1 -0.3881 -3.9225 -2.4357 42 1 3.5545 -5.0552 -1.4058 43 1 2.5467 -6.4309 -1.9491 44 1 4.1481 -3.3429 -2.9093 45 1 4.8047 -4.8496 -3.5927 46 1 5.8105 -2.7454 -4.9438 47 1 7.9240 -0.9705 -6.8208 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665387755.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:43 Heat of formation + Delta-G solvation = -28.065540 kcal Electronic energy + Delta-G solvation = -32063.852289 eV Core-core repulsion = 27827.955402 eV Total energy + Delta-G solvation = -4235.896888 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.61614 -42.20975 -40.10544 -39.27853 -36.01103 -35.15043 -34.68722 -33.62759 -33.26137 -32.08141 -30.79196 -29.19977 -28.13141 -27.51874 -26.33107 -25.86235 -24.24287 -21.98962 -21.71933 -20.96686 -20.82537 -19.98611 -19.60294 -18.74513 -18.00291 -17.63187 -17.40638 -17.15106 -16.79761 -16.33414 -16.09422 -15.94255 -15.60106 -15.17901 -14.99833 -14.75730 -14.33178 -14.25579 -14.10800 -14.06458 -13.89231 -13.78152 -13.67124 -13.49556 -13.37099 -13.21898 -12.99768 -12.94641 -12.62874 -12.50639 -12.38995 -12.37948 -12.33542 -12.11391 -12.02605 -11.45903 -11.33463 -10.50834 -10.21585 -9.98713 -9.90826 -9.50940 -9.25733 -8.44772 -5.92670 0.54324 1.15276 1.27301 1.38578 1.43354 1.55237 1.70857 1.95989 2.05486 2.28249 2.63748 3.20318 3.24344 3.27100 3.43439 3.45835 3.58791 3.73657 3.87855 3.93779 3.99228 4.11701 4.24854 4.27538 4.35716 4.38841 4.44574 4.51892 4.53914 4.56853 4.65612 4.69079 4.70451 4.77180 4.87191 4.90369 4.92280 4.96336 5.09434 5.12110 5.16199 5.41385 5.43462 5.67013 5.79239 6.00747 6.05649 6.27777 6.61336 6.89077 7.14739 7.57305 8.11980 8.72546 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010253 B = 0.003802 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.171547 B = 7361.940405 C = 8807.142670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.170 4.170 3 C -0.032 4.032 4 O -0.180 6.180 5 C 0.035 3.965 6 C -0.081 4.081 7 C -0.254 4.254 8 C 0.616 3.384 9 O -0.571 6.571 10 N -0.605 5.605 11 C 0.073 3.927 12 C 0.062 3.938 13 H 0.127 0.873 14 C -0.118 4.118 15 C 0.109 3.891 16 H 0.139 0.861 17 C 0.029 3.971 18 N -0.504 5.504 19 C 0.043 3.957 20 C 0.445 3.555 21 O -0.609 6.609 22 N -0.572 5.572 23 C -0.328 4.328 24 H 0.082 0.918 25 C -0.011 4.011 26 N -0.920 5.920 27 Si 0.989 3.011 28 H -0.272 1.272 29 H -0.274 1.274 30 H -0.272 1.272 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.246 0.754 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.117 0.883 44 H 0.064 0.936 45 H 0.105 0.895 46 H 0.394 0.606 47 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.069 1.009 14.253 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.172 4.172 3 C -0.098 4.098 4 O -0.077 6.077 5 C -0.017 4.017 6 C -0.138 4.138 7 C -0.258 4.258 8 C 0.405 3.595 9 O -0.451 6.451 10 N -0.338 5.338 11 C -0.051 4.051 12 C -0.046 4.046 13 H 0.144 0.856 14 C -0.156 4.156 15 C 0.007 3.993 16 H 0.157 0.843 17 C -0.098 4.098 18 N -0.228 5.228 19 C -0.088 4.088 20 C 0.233 3.767 21 O -0.495 6.495 22 N -0.209 5.209 23 C -0.457 4.457 24 H 0.100 0.900 25 C -0.211 4.211 26 N -0.561 5.561 27 Si 0.813 3.187 28 H -0.197 1.197 29 H -0.199 1.199 30 H -0.197 1.197 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.262 0.738 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.131 0.869 41 H 0.110 0.890 42 H 0.079 0.921 43 H 0.135 0.865 44 H 0.082 0.918 45 H 0.123 0.877 46 H 0.228 0.772 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.375 0.518 13.992 16.850 hybrid contribution 0.776 1.237 -0.075 1.462 sum -8.599 1.754 13.916 16.453 Atomic orbital electron populations 1.20198 0.87238 1.03327 1.02845 1.21665 0.97953 0.90168 1.07399 1.24401 0.78654 1.00938 1.05764 1.83743 1.30680 1.21619 1.71621 1.22883 0.96529 0.81254 1.01025 1.20523 0.91019 0.97665 1.04545 1.21101 0.94340 0.93838 1.16538 1.17038 0.75629 0.84787 0.82009 1.90758 1.53751 1.69200 1.31373 1.49305 1.66666 1.12907 1.04893 1.23168 1.01631 0.98618 0.81648 1.24721 0.91909 0.89648 0.98368 0.85566 1.23939 0.96107 1.02787 0.92766 1.24251 0.95554 0.80522 0.98928 0.84321 1.24475 0.97116 1.01555 0.86682 1.65804 1.00957 1.32305 1.23762 1.22025 0.94676 0.98613 0.93508 1.20492 0.83895 0.82636 0.89722 1.90450 1.33880 1.64189 1.60945 1.41908 1.15326 1.47854 1.15824 1.19643 1.01725 1.31375 0.93005 0.90033 1.25974 0.94374 0.97573 1.03153 1.69665 1.05102 1.42396 1.38972 0.84986 0.77731 0.78486 0.77530 1.19746 1.19861 1.19660 0.90610 0.88719 0.92835 0.73811 0.89218 0.87795 0.89400 0.91181 0.91833 0.86934 0.89038 0.92121 0.86504 0.91841 0.87668 0.77245 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.49 10.38 71.24 0.74 -0.75 16 2 C -0.17 -4.09 6.38 -18.48 -0.12 -4.21 16 3 C -0.03 -0.67 11.96 66.89 0.80 0.13 16 4 O -0.18 -4.60 10.52 4.40 0.05 -4.56 16 5 C 0.04 0.94 7.37 25.26 0.19 1.13 16 6 C -0.08 -1.79 10.24 71.24 0.73 -1.06 16 7 C -0.25 -7.27 5.35 -19.00 -0.10 -7.37 16 8 C 0.62 18.72 7.33 86.65 0.64 19.35 16 9 O -0.57 -20.38 17.45 -4.09 -0.07 -20.45 16 10 N -0.60 -16.19 2.93 -772.20 -2.27 -18.45 16 11 C 0.07 2.11 5.61 87.16 0.49 2.60 16 12 C 0.06 1.83 4.13 46.85 0.19 2.02 16 13 H 0.13 4.55 6.35 -2.39 -0.02 4.53 16 14 C -0.12 -2.54 6.83 33.47 0.23 -2.31 16 15 C 0.11 2.46 5.17 46.94 0.24 2.70 16 16 H 0.14 2.82 8.06 -2.38 -0.02 2.80 16 17 C 0.03 0.67 6.50 86.28 0.56 1.23 16 18 N -0.50 -15.15 5.26 -833.05 -4.38 -19.53 16 19 C 0.04 1.45 4.79 85.56 0.41 1.86 16 20 C 0.45 19.96 7.44 87.65 0.65 20.61 16 21 O -0.61 -30.97 13.57 -3.09 -0.04 -31.01 16 22 N -0.57 -28.12 5.29 -306.98 -1.62 -29.74 16 23 C -0.33 -17.90 9.68 84.04 0.81 -17.09 16 24 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 25 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 26 N -0.92 -48.50 13.05 21.66 0.28 -48.22 16 27 Si 0.99 41.88 29.55 68.60 2.03 43.90 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 29 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 30 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.25 2.73 8.06 -2.91 -0.02 2.71 16 35 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.09 1.92 7.93 -2.39 -0.02 1.90 16 38 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.06 2.06 5.19 -2.38 -0.01 2.05 16 40 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.06 1.43 7.71 -2.39 -0.02 1.42 16 43 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.06 2.00 5.65 -2.38 -0.01 1.99 16 45 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 46 H 0.39 18.62 7.90 -92.71 -0.73 17.89 16 47 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -70.55 387.33 1.18 -69.36 By element: Atomic # 1 Polarization: 39.68 SS G_CDS: 0.28 Total: 39.96 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 6.93 Total: 18.75 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -7.99 Total: -115.95 kcal Atomic # 8 Polarization: -55.96 SS G_CDS: -0.07 Total: -56.02 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -70.55 1.18 -69.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665387755.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.297 kcal (2) G-P(sol) polarization free energy of solvation -70.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds