Wall clock time and date at job start Wed Apr 1 2020 04:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34183 * 127.02291 * 2 1 4 4 O 1.34212 * 109.12224 * 180.26537 * 3 2 1 5 5 C 1.33657 * 110.91220 * 359.70642 * 4 3 2 6 6 C 1.36422 * 108.39382 * 0.02562 * 5 4 3 7 7 C 1.47381 * 127.19095 * 179.97438 * 6 5 4 8 8 O 1.21607 * 119.99700 * 155.23644 * 7 6 5 9 9 N 1.34773 * 119.99553 * 335.23555 * 7 6 5 10 10 C 1.49415 * 127.82379 * 354.20224 * 9 7 6 11 11 C 1.54426 * 103.83667 * 221.54845 * 10 9 7 12 12 H 1.08997 * 112.57086 * 98.42927 * 11 10 9 13 13 C 1.54406 * 108.68824 * 223.82791 * 11 10 9 14 14 N 1.48729 * 104.46160 * 137.05055 * 13 11 10 15 15 C 1.46902 * 111.00318 * 199.12425 * 14 13 11 16 16 C 1.50702 * 109.47194 * 170.00375 * 15 14 13 17 17 O 1.21289 * 119.99824 * 0.02562 * 16 15 14 18 18 N 1.34770 * 119.99597 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99764 * 179.97438 * 18 16 15 20 20 H 1.08009 * 120.00411 * 0.02562 * 19 18 16 21 21 C 1.38951 * 120.00428 * 179.97438 * 19 18 16 22 22 N 1.31417 * 119.99777 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00305 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46966 * 60.00228 * 23 21 19 25 25 H 1.48500 * 109.47049 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47086 * 300.00105 * 23 21 19 27 27 C 1.48834 * 103.44241 * 318.36840 * 14 13 11 28 28 C 1.54399 * 104.43711 * 41.62612 * 27 14 13 29 29 H 1.09000 * 113.06960 * 97.85778 * 28 27 14 30 30 C 1.48320 * 128.19755 * 174.54650 * 9 7 6 31 31 H 1.08994 * 109.47567 * 270.19965 * 1 2 3 32 32 H 1.09000 * 109.46685 * 30.20338 * 1 2 3 33 33 H 1.09002 * 109.46822 * 150.19695 * 1 2 3 34 34 H 1.07994 * 125.43656 * 359.97438 * 3 2 1 35 35 H 1.07995 * 125.80592 * 179.97438 * 5 4 3 36 36 H 1.08994 * 110.38818 * 103.15701 * 10 9 7 37 37 H 1.09004 * 111.03144 * 340.24923 * 10 9 7 38 38 H 1.08995 * 110.46168 * 255.83542 * 13 11 10 39 39 H 1.09000 * 110.46054 * 18.27318 * 13 11 10 40 40 H 1.08999 * 109.46746 * 290.00337 * 15 14 13 41 41 H 1.09000 * 109.46732 * 50.00065 * 15 14 13 42 42 H 0.97004 * 120.00520 * 359.97438 * 18 16 15 43 43 H 0.96995 * 119.99918 * 179.97438 * 22 21 19 44 44 H 1.09000 * 110.34016 * 282.91264 * 27 14 13 45 45 H 1.09004 * 110.59593 * 160.46475 * 27 14 13 46 46 H 1.09004 * 110.46051 * 19.37441 * 30 9 7 47 47 H 1.09004 * 110.45582 * 256.81179 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0713 0.0000 4 8 3.5921 0.6588 -0.0059 5 6 3.6623 -0.6759 -0.0035 6 6 2.3922 -1.1738 0.0037 7 6 1.9913 -2.5921 0.0080 8 8 0.9079 -2.9162 0.4551 9 7 2.8255 -3.5295 -0.4835 10 6 4.1324 -3.3203 -1.1770 11 6 4.1020 -4.3388 -2.3373 12 1 3.8056 -3.8863 -3.2836 13 6 5.4769 -5.0367 -2.4193 14 7 5.1527 -6.4715 -2.6386 15 6 6.2951 -7.3282 -2.2937 16 6 5.8587 -8.7706 -2.2911 17 8 4.7092 -9.0569 -2.5516 18 7 6.7458 -9.7424 -1.9995 19 6 6.3487 -11.0546 -1.9966 20 1 5.3251 -11.3096 -2.2285 21 6 7.2633 -12.0567 -1.6965 22 7 8.5089 -11.7465 -1.4148 23 14 6.7221 -13.8445 -1.6919 24 1 6.2165 -14.2121 -3.0390 25 1 7.8769 -14.7104 -1.3429 26 1 5.6424 -14.0323 -0.6898 27 6 4.0061 -6.7115 -1.7205 28 6 3.1222 -5.4546 -1.8718 29 1 2.2899 -5.5982 -2.5609 30 6 2.6593 -5.0033 -0.4694 31 1 -0.3634 0.0036 1.0276 32 1 -0.3633 0.8882 -0.5170 33 1 -0.3633 -0.8918 -0.5108 34 1 1.9895 2.1010 -0.0004 35 1 4.5702 -1.2608 -0.0074 36 1 4.9597 -3.5372 -0.5014 37 1 4.2117 -2.3044 -1.5639 38 1 6.0541 -4.6442 -3.2564 39 1 6.0255 -4.9085 -1.4861 40 1 7.0880 -7.1897 -3.0287 41 1 6.6656 -7.0588 -1.3046 42 1 7.6652 -9.5135 -1.7916 43 1 9.1473 -12.4460 -1.2049 44 1 4.3573 -6.8089 -0.6932 45 1 3.4551 -7.6030 -2.0200 46 1 1.6138 -5.2674 -0.3102 47 1 3.2876 -5.4502 0.3011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672429178.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:51 Heat of formation + Delta-G solvation = -28.049194 kcal Electronic energy + Delta-G solvation = -30163.995202 eV Core-core repulsion = 25928.099023 eV Total energy + Delta-G solvation = -4235.896179 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.93091 -40.56760 -38.95179 -37.93581 -35.64793 -34.17970 -33.93035 -32.13343 -31.28963 -30.93977 -30.24972 -27.60911 -27.38484 -25.96261 -25.22389 -24.02058 -22.47267 -21.47379 -20.97574 -19.69651 -19.57938 -19.12309 -17.91188 -17.73291 -16.89637 -16.49169 -16.06843 -15.91324 -15.75870 -15.48463 -14.90233 -14.76844 -14.54221 -14.46482 -13.90174 -13.84433 -13.58804 -13.43993 -13.21219 -12.95113 -12.83767 -12.75905 -12.28491 -12.23629 -11.94345 -11.87772 -11.61277 -11.52081 -11.36595 -11.09178 -10.93929 -10.73125 -10.70759 -10.44924 -10.24674 -10.17513 -9.85510 -9.51241 -9.05084 -8.99351 -8.48903 -8.09096 -7.96885 -6.45355 -3.86323 1.03675 1.68834 2.47203 2.68079 3.00037 3.17804 3.24061 3.28267 3.84650 3.98077 4.02591 4.17662 4.20293 4.33249 4.42237 4.60390 4.70489 4.84301 4.91450 5.01297 5.06893 5.09432 5.12276 5.20599 5.21740 5.37141 5.39220 5.43634 5.52450 5.56687 5.63238 5.66788 5.68765 5.74108 5.79678 5.90058 5.95001 6.06097 6.09737 6.20842 6.24867 6.57352 6.59335 7.06488 7.18724 7.27792 7.51801 7.94383 8.01774 8.57142 9.14028 9.49458 10.00849 10.72121 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027378 B = 0.001912 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.491974 B =14642.387729 C =15111.993437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.135 4.135 3 C -0.045 4.045 4 O -0.172 6.172 5 C 0.016 3.984 6 C -0.226 4.226 7 C 0.607 3.393 8 O -0.534 6.534 9 N -0.623 5.623 10 C 0.095 3.905 11 C -0.100 4.100 12 H 0.098 0.902 13 C 0.032 3.968 14 N -0.484 5.484 15 C 0.034 3.966 16 C 0.441 3.559 17 O -0.581 6.581 18 N -0.561 5.561 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.040 3.960 28 C -0.101 4.101 29 H 0.098 0.902 30 C 0.111 3.889 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.208 0.792 35 H 0.212 0.788 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.046 0.954 40 H 0.091 0.909 41 H 0.049 0.951 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.040 0.960 45 H 0.119 0.881 46 H 0.087 0.913 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.074 25.663 2.237 26.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.137 4.137 3 C -0.111 4.111 4 O -0.067 6.067 5 C -0.054 4.054 6 C -0.231 4.231 7 C 0.397 3.603 8 O -0.411 6.411 9 N -0.357 5.357 10 C -0.028 4.028 11 C -0.120 4.120 12 H 0.116 0.884 13 C -0.096 4.096 14 N -0.207 5.207 15 C -0.098 4.098 16 C 0.226 3.774 17 O -0.465 6.465 18 N -0.197 5.197 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.758 3.242 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.088 4.088 28 C -0.121 4.121 29 H 0.116 0.884 30 C -0.011 4.011 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.224 0.776 35 H 0.229 0.771 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.109 0.891 41 H 0.067 0.933 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.058 0.942 45 H 0.136 0.864 46 H 0.105 0.895 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.221 25.297 1.853 26.373 hybrid contribution 0.826 -0.761 1.001 1.505 sum -6.396 24.537 2.855 25.517 Atomic orbital electron populations 1.20182 0.88290 1.02798 1.02737 1.21418 0.97275 0.90313 1.04649 1.23724 0.79673 0.99695 1.08043 1.83796 1.29637 1.22338 1.70956 1.24639 0.98900 0.80987 1.00837 1.21357 0.93506 0.93986 1.14206 1.16833 0.83083 0.83099 0.77313 1.90793 1.21336 1.81767 1.47242 1.49275 1.21356 1.07058 1.57983 1.23117 0.85480 1.00335 0.93875 1.22927 0.95792 0.95104 0.98174 0.88402 1.23365 0.95487 0.90186 1.00584 1.65559 1.05204 1.00930 1.49054 1.22088 0.94070 0.93554 1.00106 1.19686 0.86837 0.86217 0.84625 1.90452 1.18899 1.83049 1.54136 1.41846 1.11419 1.05949 1.60481 1.19654 0.97709 0.81133 1.44469 0.87909 1.25273 0.94982 1.00578 0.97066 1.69602 1.02958 1.34578 1.47079 0.85911 0.77870 0.81424 0.78987 1.19850 1.20972 1.19896 1.23504 0.92428 0.98502 0.94367 1.23039 0.98409 0.94909 0.95756 0.88403 1.22656 1.03091 0.78330 0.97029 0.90903 0.91572 0.90717 0.77554 0.77134 0.90270 0.89788 0.89920 0.93618 0.89057 0.93309 0.77454 0.91780 0.94180 0.86354 0.89497 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 9.98 36.01 0.36 -0.35 16 2 C -0.13 -1.28 6.37 -102.49 -0.65 -1.93 16 3 C -0.05 -0.33 11.96 29.30 0.35 0.02 16 4 O -0.17 -1.38 10.52 7.65 0.08 -1.30 16 5 C 0.02 0.13 10.23 30.08 0.31 0.44 16 6 C -0.23 -2.40 6.01 -103.27 -0.62 -3.02 16 7 C 0.61 7.89 7.86 -12.54 -0.10 7.79 16 8 O -0.53 -8.77 16.41 5.27 0.09 -8.68 16 9 N -0.62 -6.94 3.33 -169.34 -0.56 -7.51 16 10 C 0.09 0.77 5.19 -1.67 -0.01 0.76 16 11 C -0.10 -0.99 4.13 -87.75 -0.36 -1.35 16 12 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 13 C 0.03 0.35 5.97 -2.07 -0.01 0.34 16 14 N -0.48 -7.48 5.35 -230.99 -1.24 -8.72 16 15 C 0.03 0.57 5.56 -4.97 -0.03 0.54 16 16 C 0.44 10.00 7.50 -10.99 -0.08 9.91 16 17 O -0.58 -14.93 13.29 5.55 0.07 -14.86 16 18 N -0.56 -13.82 5.29 -10.96 -0.06 -13.88 16 19 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 20 H 0.10 2.94 7.16 -52.48 -0.38 2.56 16 21 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 22 N -0.90 -24.11 13.05 55.50 0.72 -23.38 16 23 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 C 0.04 0.61 4.90 -2.02 -0.01 0.60 16 28 C -0.10 -1.23 4.17 -87.75 -0.37 -1.59 16 29 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 30 C 0.11 1.31 6.63 -2.29 -0.02 1.30 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.78 7.64 -51.93 -0.40 0.38 16 34 H 0.21 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.21 1.03 6.35 -52.49 -0.33 0.69 16 36 H 0.08 0.55 7.17 -51.93 -0.37 0.17 16 37 H 0.08 0.53 5.92 -51.93 -0.31 0.22 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.45 6.89 -51.93 -0.36 0.09 16 40 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 41 H 0.05 0.74 7.90 -51.93 -0.41 0.33 16 42 H 0.39 9.25 7.90 -40.82 -0.32 8.92 16 43 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.04 0.61 7.05 -51.93 -0.37 0.25 16 45 H 0.12 2.26 6.01 -51.93 -0.31 1.95 16 46 H 0.09 1.11 7.85 -51.93 -0.41 0.70 16 47 H 0.08 0.89 7.17 -51.93 -0.37 0.52 16 LS Contribution 379.94 15.07 5.73 5.73 Total: -1.00 -33.80 379.94 -8.10 -41.90 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -6.43 Total: 9.30 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -1.48 Total: 5.62 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -1.13 Total: -53.49 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: 0.24 Total: -24.84 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.80 -8.10 -41.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672429178.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.850 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds