Wall clock time and date at job start Wed Apr 1 2020 04:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34183 * 127.02291 * 2 1 4 4 O 1.34212 * 109.12224 * 180.26537 * 3 2 1 5 5 C 1.33657 * 110.91220 * 359.70642 * 4 3 2 6 6 C 1.36422 * 108.39382 * 0.02562 * 5 4 3 7 7 C 1.47381 * 127.19095 * 179.97438 * 6 5 4 8 8 O 1.21607 * 119.99700 * 155.23644 * 7 6 5 9 9 N 1.34773 * 119.99553 * 335.23555 * 7 6 5 10 10 C 1.49415 * 127.82379 * 354.20224 * 9 7 6 11 11 C 1.54426 * 103.83667 * 221.54845 * 10 9 7 12 12 H 1.08997 * 112.57086 * 98.42927 * 11 10 9 13 13 C 1.54406 * 108.68824 * 223.82791 * 11 10 9 14 14 N 1.48729 * 104.46160 * 137.05055 * 13 11 10 15 15 C 1.46902 * 111.00318 * 199.12425 * 14 13 11 16 16 C 1.50702 * 109.47194 * 170.00375 * 15 14 13 17 17 O 1.21289 * 119.99824 * 0.02562 * 16 15 14 18 18 N 1.34770 * 119.99597 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99764 * 179.97438 * 18 16 15 20 20 H 1.08009 * 120.00411 * 0.02562 * 19 18 16 21 21 C 1.38951 * 120.00428 * 179.97438 * 19 18 16 22 22 N 1.31417 * 119.99777 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00305 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46966 * 60.00228 * 23 21 19 25 25 H 1.48500 * 109.47049 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47086 * 300.00105 * 23 21 19 27 27 C 1.48834 * 103.44241 * 318.36840 * 14 13 11 28 28 C 1.54399 * 104.43711 * 41.62612 * 27 14 13 29 29 H 1.09000 * 113.06960 * 97.85778 * 28 27 14 30 30 C 1.48320 * 128.19755 * 174.54650 * 9 7 6 31 31 H 1.08994 * 109.47567 * 270.19965 * 1 2 3 32 32 H 1.09000 * 109.46685 * 30.20338 * 1 2 3 33 33 H 1.09002 * 109.46822 * 150.19695 * 1 2 3 34 34 H 1.07994 * 125.43656 * 359.97438 * 3 2 1 35 35 H 1.07995 * 125.80592 * 179.97438 * 5 4 3 36 36 H 1.08994 * 110.38818 * 103.15701 * 10 9 7 37 37 H 1.09004 * 111.03144 * 340.24923 * 10 9 7 38 38 H 1.08995 * 110.46168 * 255.83542 * 13 11 10 39 39 H 1.09000 * 110.46054 * 18.27318 * 13 11 10 40 40 H 1.08999 * 109.46746 * 290.00337 * 15 14 13 41 41 H 1.09000 * 109.46732 * 50.00065 * 15 14 13 42 42 H 0.97004 * 120.00520 * 359.97438 * 18 16 15 43 43 H 0.96995 * 119.99918 * 179.97438 * 22 21 19 44 44 H 1.09000 * 110.34016 * 282.91264 * 27 14 13 45 45 H 1.09004 * 110.59593 * 160.46475 * 27 14 13 46 46 H 1.09004 * 110.46051 * 19.37441 * 30 9 7 47 47 H 1.09004 * 110.45582 * 256.81179 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0713 0.0000 4 8 3.5921 0.6588 -0.0059 5 6 3.6623 -0.6759 -0.0035 6 6 2.3922 -1.1738 0.0037 7 6 1.9913 -2.5921 0.0080 8 8 0.9079 -2.9162 0.4551 9 7 2.8255 -3.5295 -0.4835 10 6 4.1324 -3.3203 -1.1770 11 6 4.1020 -4.3388 -2.3373 12 1 3.8056 -3.8863 -3.2836 13 6 5.4769 -5.0367 -2.4193 14 7 5.1527 -6.4715 -2.6386 15 6 6.2951 -7.3282 -2.2937 16 6 5.8587 -8.7706 -2.2911 17 8 4.7092 -9.0569 -2.5516 18 7 6.7458 -9.7424 -1.9995 19 6 6.3487 -11.0546 -1.9966 20 1 5.3251 -11.3096 -2.2285 21 6 7.2633 -12.0567 -1.6965 22 7 8.5089 -11.7465 -1.4148 23 14 6.7221 -13.8445 -1.6919 24 1 6.2165 -14.2121 -3.0390 25 1 7.8769 -14.7104 -1.3429 26 1 5.6424 -14.0323 -0.6898 27 6 4.0061 -6.7115 -1.7205 28 6 3.1222 -5.4546 -1.8718 29 1 2.2899 -5.5982 -2.5609 30 6 2.6593 -5.0033 -0.4694 31 1 -0.3634 0.0036 1.0276 32 1 -0.3633 0.8882 -0.5170 33 1 -0.3633 -0.8918 -0.5108 34 1 1.9895 2.1010 -0.0004 35 1 4.5702 -1.2608 -0.0074 36 1 4.9597 -3.5372 -0.5014 37 1 4.2117 -2.3044 -1.5639 38 1 6.0541 -4.6442 -3.2564 39 1 6.0255 -4.9085 -1.4861 40 1 7.0880 -7.1897 -3.0287 41 1 6.6656 -7.0588 -1.3046 42 1 7.6652 -9.5135 -1.7916 43 1 9.1473 -12.4460 -1.2049 44 1 4.3573 -6.8089 -0.6932 45 1 3.4551 -7.6030 -2.0200 46 1 1.6138 -5.2674 -0.3102 47 1 3.2876 -5.4502 0.3011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672429178.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:50 Heat of formation + Delta-G solvation = -53.407135 kcal Electronic energy + Delta-G solvation = -30165.094805 eV Core-core repulsion = 25928.099023 eV Total energy + Delta-G solvation = -4236.995782 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.53826 -41.56275 -40.28884 -39.36950 -36.82777 -35.84216 -34.83293 -33.38949 -32.97764 -31.85846 -31.10431 -28.77109 -28.17047 -26.93774 -26.68498 -25.32200 -23.28753 -22.55272 -21.65140 -21.03186 -20.53515 -20.32339 -19.79760 -18.53274 -17.78693 -17.56039 -17.14156 -16.90669 -16.72828 -16.61770 -16.37563 -16.01864 -15.89930 -15.58896 -15.32958 -14.87110 -14.60819 -14.42724 -14.13115 -14.03375 -13.89033 -13.57939 -13.47118 -13.38142 -13.17002 -13.05239 -12.99905 -12.62563 -12.49056 -12.44435 -12.40558 -12.15172 -11.93563 -11.81929 -11.66547 -11.44454 -11.16788 -10.58587 -10.19748 -10.00138 -9.89803 -9.61933 -9.34456 -8.46443 -5.94564 0.36155 1.06236 1.39181 1.41437 1.51803 1.67985 2.05860 2.06944 2.15691 2.28755 2.88205 3.16020 3.21374 3.43430 3.45157 3.61988 3.65941 3.83450 3.97687 4.03078 4.20087 4.22961 4.29239 4.30577 4.35352 4.47009 4.48932 4.51481 4.57860 4.66516 4.71882 4.75977 4.76839 4.87433 4.88940 4.99967 5.02561 5.08140 5.12322 5.29058 5.30848 5.41739 5.45914 5.85398 5.92618 5.99649 6.12282 6.40779 6.61448 7.01413 7.13757 7.57045 8.13285 8.70595 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027378 B = 0.001912 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.491974 B =14642.387729 C =15111.993437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.169 4.169 3 C -0.026 4.026 4 O -0.172 6.172 5 C 0.040 3.960 6 C -0.262 4.262 7 C 0.601 3.399 8 O -0.585 6.585 9 N -0.621 5.621 10 C 0.098 3.902 11 C -0.092 4.092 12 H 0.107 0.893 13 C 0.036 3.964 14 N -0.506 5.506 15 C 0.047 3.953 16 C 0.437 3.563 17 O -0.616 6.616 18 N -0.573 5.573 19 C -0.332 4.332 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.919 5.919 23 Si 0.990 3.010 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.273 1.273 27 C 0.046 3.954 28 C -0.095 4.095 29 H 0.086 0.914 30 C 0.114 3.886 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.045 0.955 34 H 0.246 0.754 35 H 0.244 0.756 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.068 0.932 40 H 0.113 0.887 41 H 0.073 0.927 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.867 28.543 2.176 28.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.171 4.171 3 C -0.091 4.091 4 O -0.066 6.066 5 C -0.030 4.030 6 C -0.267 4.267 7 C 0.393 3.607 8 O -0.466 6.466 9 N -0.354 5.354 10 C -0.023 4.023 11 C -0.111 4.111 12 H 0.125 0.875 13 C -0.091 4.091 14 N -0.231 5.231 15 C -0.085 4.085 16 C 0.225 3.775 17 O -0.503 6.503 18 N -0.210 5.210 19 C -0.462 4.462 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.199 1.199 27 C -0.083 4.083 28 C -0.115 4.115 29 H 0.104 0.896 30 C -0.009 4.009 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.064 0.936 34 H 0.262 0.738 35 H 0.260 0.740 36 H 0.122 0.878 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.086 0.914 40 H 0.131 0.869 41 H 0.091 0.909 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.056 0.944 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.967 28.209 1.776 28.698 hybrid contribution 0.099 -1.604 0.991 1.888 sum -4.869 26.605 2.767 27.188 Atomic orbital electron populations 1.20124 0.88488 1.02639 1.02350 1.21663 0.97723 0.90979 1.06766 1.24352 0.78789 1.00611 1.05367 1.83845 1.29978 1.22257 1.70505 1.25105 0.98748 0.81004 0.98140 1.21337 0.95319 0.92804 1.17211 1.17283 0.82516 0.84294 0.76565 1.90757 1.23548 1.82671 1.49638 1.49312 1.22289 1.06228 1.57564 1.23347 0.84403 1.01262 0.93335 1.22926 0.94409 0.94443 0.99352 0.87450 1.23490 0.96201 0.86814 1.02622 1.65526 1.04677 1.03500 1.49353 1.21972 0.94905 0.89395 1.02203 1.20826 0.85977 0.88444 0.82277 1.90457 1.20538 1.84323 1.54942 1.41917 1.11927 1.05639 1.61523 1.19597 0.97100 0.83058 1.46404 0.90410 1.26000 0.94973 1.04006 0.96257 1.69658 1.03460 1.35796 1.47085 0.85026 0.77814 0.76942 0.78788 1.19820 1.19486 1.19852 1.23241 0.92862 0.98106 0.94043 1.22854 0.98214 0.94611 0.95870 0.89564 1.22517 1.01992 0.79426 0.96958 0.91505 0.88866 0.93624 0.73833 0.74034 0.87827 0.87092 0.87798 0.91433 0.86874 0.90897 0.76964 0.91324 0.94376 0.91048 0.91538 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 9.98 71.24 0.71 -0.64 16 2 C -0.17 -2.98 6.37 -18.49 -0.12 -3.10 16 3 C -0.03 -0.28 11.96 66.89 0.80 0.52 16 4 O -0.17 -2.06 10.52 4.46 0.05 -2.01 16 5 C 0.04 0.49 10.23 67.40 0.69 1.18 16 6 C -0.26 -5.18 6.01 -18.99 -0.11 -5.30 16 7 C 0.60 15.65 7.86 86.65 0.68 16.33 16 8 O -0.58 -20.35 16.41 -4.05 -0.07 -20.42 16 9 N -0.62 -13.18 3.33 -807.92 -2.69 -15.87 16 10 C 0.10 1.23 5.19 86.30 0.45 1.68 16 11 C -0.09 -1.55 4.13 -8.93 -0.04 -1.59 16 12 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 13 C 0.04 0.65 5.97 86.43 0.52 1.16 16 14 N -0.51 -14.91 5.35 -884.71 -4.73 -19.64 16 15 C 0.05 1.49 5.56 85.56 0.48 1.97 16 16 C 0.44 20.14 7.50 87.66 0.66 20.80 16 17 O -0.62 -33.07 13.29 -3.06 -0.04 -33.11 16 18 N -0.57 -28.75 5.29 -306.99 -1.62 -30.37 16 19 C -0.33 -18.64 9.68 84.04 0.81 -17.83 16 20 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 22 N -0.92 -49.00 13.05 21.66 0.28 -48.72 16 23 Si 0.99 42.82 29.55 68.60 2.03 44.84 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 C 0.05 1.43 4.90 86.40 0.42 1.85 16 28 C -0.10 -2.31 4.17 -8.94 -0.04 -2.35 16 29 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 30 C 0.11 2.73 6.63 86.51 0.57 3.31 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.04 1.02 7.64 -2.39 -0.02 1.01 16 34 H 0.25 0.54 8.06 -2.91 -0.02 0.52 16 35 H 0.24 1.10 6.35 -2.91 -0.02 1.08 16 36 H 0.10 0.88 7.17 -2.39 -0.02 0.86 16 37 H 0.11 0.85 5.92 -2.38 -0.01 0.84 16 38 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.07 0.96 6.89 -2.39 -0.02 0.95 16 40 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 41 H 0.07 2.01 7.90 -2.39 -0.02 1.99 16 42 H 0.40 18.81 7.90 -92.71 -0.73 18.07 16 43 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 44 H 0.04 1.18 7.05 -2.39 -0.02 1.16 16 45 H 0.07 2.92 6.01 -2.39 -0.01 2.91 16 46 H 0.07 1.85 7.85 -2.38 -0.02 1.83 16 47 H 0.08 1.88 7.17 -2.39 -0.02 1.86 16 Total: -1.00 -78.77 379.94 0.44 -78.33 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.29 Total: 29.20 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 6.95 Total: 17.78 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -8.76 Total: -114.61 kcal Atomic # 8 Polarization: -55.48 SS G_CDS: -0.06 Total: -55.54 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -78.77 0.44 -78.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672429178.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.919 kcal (2) G-P(sol) polarization free energy of solvation -78.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds