Wall clock time and date at job start Wed Apr 1 2020 04:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 117.00487 * 2 1 4 4 O 1.20829 * 119.99645 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00216 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.46975 * 59.99862 * 5 3 2 7 7 C 1.53001 * 109.46831 * 300.00058 * 5 3 2 8 8 C 1.53000 * 109.47205 * 180.02562 * 5 3 2 9 9 H 1.08992 * 109.49734 * 179.97438 * 8 5 3 10 10 C 1.53040 * 109.49675 * 299.99863 * 8 5 3 11 11 C 1.53040 * 109.53752 * 181.31336 * 10 8 5 12 12 C 1.53187 * 109.31490 * 298.63355 * 11 10 8 13 13 N 1.46925 * 108.77317 * 54.63877 * 12 11 10 14 14 S 1.65601 * 120.63327 * 126.36702 * 13 12 11 15 15 O 1.42096 * 104.27550 * 333.92891 * 14 13 12 16 16 O 1.42097 * 104.27967 * 206.06734 * 14 13 12 17 17 C 1.81399 * 104.44938 * 89.99777 * 14 13 12 18 18 C 1.53002 * 109.47162 * 180.02562 * 17 14 13 19 19 C 1.50706 * 109.46925 * 179.97438 * 18 17 14 20 20 H 1.07999 * 120.00196 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99394 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00338 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99424 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47474 * 90.00322 * 23 21 19 25 25 H 1.48507 * 109.46754 * 210.00056 * 23 21 19 26 26 H 1.48498 * 109.47278 * 329.99887 * 23 21 19 27 27 C 1.46931 * 118.73652 * 306.63923 * 13 12 11 28 28 H 1.09002 * 109.47066 * 59.99755 * 1 2 3 29 29 H 1.08993 * 109.47397 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46857 * 300.00425 * 1 2 3 31 31 H 1.08999 * 109.46836 * 179.97438 * 6 5 3 32 32 H 1.08993 * 109.47069 * 300.00108 * 6 5 3 33 33 H 1.09000 * 109.46935 * 60.00234 * 6 5 3 34 34 H 1.09001 * 109.47327 * 299.99788 * 7 5 3 35 35 H 1.08993 * 109.47366 * 59.99799 * 7 5 3 36 36 H 1.08999 * 109.46727 * 180.02562 * 7 5 3 37 37 H 1.09009 * 109.46171 * 61.29850 * 10 8 5 38 38 H 1.08996 * 109.46195 * 301.34083 * 10 8 5 39 39 H 1.09010 * 109.49542 * 178.68117 * 11 10 8 40 40 H 1.08996 * 109.49690 * 58.59201 * 11 10 8 41 41 H 1.08997 * 109.59085 * 294.84973 * 12 11 10 42 42 H 1.09005 * 109.70242 * 174.48993 * 12 11 10 43 43 H 1.09004 * 109.47089 * 300.00001 * 17 14 13 44 44 H 1.09004 * 109.47568 * 60.00012 * 17 14 13 45 45 H 1.09000 * 109.46497 * 299.99702 * 18 17 14 46 46 H 1.08996 * 109.46876 * 60.00092 * 18 17 14 47 47 H 0.96996 * 119.99730 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.58430 * 173.15135 * 27 13 12 49 49 H 1.09002 * 109.58356 * 293.57231 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.1129 0.5814 -1.2502 7 6 4.1139 0.5809 1.2483 8 6 4.0003 2.7419 0.0002 9 1 5.0887 2.7994 0.0002 10 6 3.4530 3.4371 -1.2485 11 6 3.9137 4.8964 -1.2653 12 6 3.3624 5.6161 -0.0305 13 7 3.7641 4.8704 1.1700 14 16 4.5561 5.6305 2.4099 15 8 5.2121 6.7263 1.7870 16 8 5.2973 4.5946 3.0396 17 6 3.2310 6.2183 3.5004 18 6 3.8424 6.9474 4.6986 19 6 2.7415 7.4363 5.6043 20 1 1.7091 7.2464 5.3505 21 6 3.0525 8.1261 6.7569 22 7 4.3097 8.3578 7.0657 23 14 1.6880 8.7314 7.8799 24 1 1.3747 7.6856 8.8865 25 1 2.1294 9.9687 8.5726 26 1 0.4753 9.0215 7.0734 27 6 3.4550 3.4360 1.2470 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 5.2014 0.6388 -1.2508 32 1 3.8038 -0.4638 -1.2502 33 1 3.7228 1.0757 -2.1399 34 1 3.7245 1.0748 2.1386 35 1 3.8048 -0.4643 1.2483 36 1 5.2023 0.6383 1.2481 37 1 2.3636 3.4005 -1.2365 38 1 3.8233 2.9290 -2.1388 39 1 3.5430 5.3846 -2.1668 40 1 5.0030 4.9341 -1.2524 41 1 2.2748 5.6585 -0.0875 42 1 3.7657 6.6277 0.0158 43 1 2.5845 6.9023 2.9506 44 1 2.6457 5.3685 3.8518 45 1 4.4891 6.2637 5.2485 46 1 4.4273 7.7972 4.3469 47 1 4.5284 8.8434 7.8764 48 1 3.9213 3.0089 2.1348 49 1 2.3750 3.2971 1.2962 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093022810.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:02 Heat of formation + Delta-G solvation = -170.213235 kcal Electronic energy + Delta-G solvation = -30637.862964 eV Core-core repulsion = 26498.953289 eV Total energy + Delta-G solvation = -4138.909674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.40386 -38.84200 -36.66526 -36.54818 -35.71254 -35.35159 -33.85282 -32.14884 -31.11688 -30.16510 -28.03665 -27.86723 -25.56933 -24.44427 -24.06226 -23.03434 -21.55499 -20.69250 -19.96125 -18.34475 -17.59676 -17.44972 -16.73182 -16.64968 -16.35046 -15.70770 -15.34712 -14.81539 -14.64003 -14.50256 -14.42396 -14.31024 -13.96018 -13.81233 -13.40606 -13.24924 -13.11156 -12.72957 -12.57189 -12.47877 -12.41500 -12.21798 -12.07350 -11.72060 -11.65726 -11.55307 -11.49955 -11.40155 -11.22233 -11.09504 -11.06073 -10.93097 -10.71757 -10.47619 -10.38954 -10.36189 -10.34615 -10.04797 -9.69654 -9.24856 -8.61639 -8.48241 -6.10290 -4.15605 0.82206 1.94988 2.43081 3.09289 3.27476 3.33513 3.36741 4.13818 4.33025 4.35940 4.42476 4.44337 4.63926 4.74518 4.81199 4.87476 4.88269 4.91366 5.05632 5.19801 5.21988 5.24781 5.27957 5.35320 5.39185 5.44534 5.48993 5.57090 5.63007 5.67153 5.74670 5.78569 5.81303 5.88226 5.92717 5.96526 5.96991 6.07732 6.17068 6.32761 6.48874 6.53974 6.79151 7.32874 7.39147 7.52620 7.83055 8.20495 8.87830 9.48927 11.00788 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014246 B = 0.003018 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.984411 B = 9274.605417 C =10154.696426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.468 3.532 4 O -0.491 6.491 5 C -0.047 4.047 6 C -0.142 4.142 7 C -0.150 4.150 8 C -0.079 4.079 9 H 0.090 0.910 10 C -0.128 4.128 11 C -0.127 4.127 12 C 0.119 3.881 13 N -1.003 6.003 14 S 2.590 3.410 15 O -0.965 6.965 16 O -0.966 6.966 17 C -0.590 4.590 18 C 0.028 3.972 19 C -0.519 4.519 20 H 0.061 0.939 21 C 0.057 3.943 22 N -0.891 5.891 23 Si 0.900 3.100 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.109 3.891 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.092 0.908 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.033 0.967 46 H 0.033 0.967 47 H 0.265 0.735 48 H 0.090 0.910 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.503 -18.208 -19.471 27.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.311 3.689 4 O -0.378 6.378 5 C -0.049 4.049 6 C -0.199 4.199 7 C -0.207 4.207 8 C -0.099 4.099 9 H 0.108 0.892 10 C -0.165 4.165 11 C -0.166 4.166 12 C -0.007 4.007 13 N -0.839 5.839 14 S 2.689 3.311 15 O -0.955 6.955 16 O -0.956 6.956 17 C -0.723 4.723 18 C -0.011 4.011 19 C -0.559 4.559 20 H 0.079 0.921 21 C -0.145 4.145 22 N -0.529 5.529 23 Si 0.727 3.273 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 C -0.016 4.016 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.051 0.949 46 H 0.051 0.949 47 H 0.074 0.926 48 H 0.108 0.892 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.667 -17.748 -19.287 26.466 hybrid contribution -1.623 0.463 0.806 1.871 sum -5.290 -17.285 -18.481 25.852 Atomic orbital electron populations 1.23271 0.76450 1.03616 1.02660 1.86505 1.23263 1.33605 1.83977 1.23814 0.91840 0.81255 0.72034 1.90591 1.67090 1.35735 1.44402 1.20613 0.86814 0.98042 0.99429 1.21919 1.02109 1.00620 0.95276 1.21988 1.02525 1.00743 0.95409 1.21356 1.01279 0.90403 0.96910 0.89193 1.21879 1.03069 0.95315 0.96222 1.21801 1.01315 0.95751 0.97706 1.21384 0.99722 0.95540 0.84023 1.57837 1.77221 1.16904 1.31896 1.05656 0.76987 0.74052 0.74400 1.93520 1.72523 1.55044 1.74460 1.93512 1.68925 1.56491 1.76671 1.30502 1.16890 1.11099 1.13831 1.18962 0.97166 0.95352 0.89603 1.21018 0.92561 1.36166 1.06134 0.92062 1.25070 0.95762 0.95849 0.97822 1.69957 1.16911 1.40567 1.25468 0.86471 0.81841 0.78354 0.80628 1.20472 1.20998 1.19757 1.21730 1.02161 0.79695 0.98055 0.91963 0.88219 0.91722 0.90704 0.91202 0.91718 0.91320 0.91092 0.90367 0.89374 0.92081 0.91010 0.91609 0.91557 0.88931 0.86286 0.86371 0.94910 0.94890 0.92552 0.89154 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.22 10.37 -39.26 -0.41 -3.63 16 3 C 0.47 4.79 5.95 36.01 0.21 5.00 16 4 O -0.49 -6.05 11.12 -18.75 -0.21 -6.26 16 5 C -0.05 -0.42 0.53 -155.66 -0.08 -0.50 16 6 C -0.14 -0.96 8.06 37.16 0.30 -0.66 16 7 C -0.15 -1.26 8.05 37.16 0.30 -0.96 16 8 C -0.08 -0.86 1.66 -90.72 -0.15 -1.01 16 9 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 10 C -0.13 -1.30 4.54 -26.69 -0.12 -1.42 16 11 C -0.13 -1.37 6.08 -26.61 -0.16 -1.53 16 12 C 0.12 1.53 6.43 -3.71 -0.02 1.51 16 13 N -1.00 -14.96 3.23 -113.77 -0.37 -15.33 16 14 S 2.59 49.10 5.45 -107.50 -0.59 48.51 16 15 O -0.97 -20.61 16.59 -57.54 -0.95 -21.57 16 16 O -0.97 -20.35 16.58 -57.54 -0.95 -21.31 16 17 C -0.59 -11.95 6.12 37.16 0.23 -11.72 16 18 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 19 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 20 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 23 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 27 C 0.11 1.46 4.93 -3.93 -0.02 1.44 16 28 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.42 8.11 -51.93 -0.42 0.00 16 33 H 0.06 0.42 6.40 -51.93 -0.33 0.09 16 34 H 0.07 0.65 6.57 -51.93 -0.34 0.31 16 35 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.00 5.55 -51.92 -0.29 0.71 16 38 H 0.06 0.52 6.36 -51.93 -0.33 0.19 16 39 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.09 1.24 6.86 -51.93 -0.36 0.89 16 43 H 0.12 2.20 8.14 -51.92 -0.42 1.78 16 44 H 0.12 2.19 8.14 -51.92 -0.42 1.77 16 45 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.09 1.25 5.46 -51.93 -0.28 0.96 16 49 H 0.09 1.17 5.41 -51.93 -0.28 0.89 16 LS Contribution 390.65 15.07 5.89 5.89 Total: -1.00 -35.49 390.65 -8.97 -44.46 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -8.09 Total: 0.26 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 1.00 Total: -21.42 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.37 Total: -41.44 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: -2.52 Total: -52.76 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 49.10 SS G_CDS: -0.59 Total: 48.51 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.49 -8.97 -44.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093022810.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.755 kcal (2) G-P(sol) polarization free energy of solvation -35.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds