Wall clock time and date at job start Wed Apr 1 2020 04:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 117.00487 * 2 1 4 4 O 1.20829 * 119.99645 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00216 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.46975 * 59.99862 * 5 3 2 7 7 C 1.53001 * 109.46831 * 300.00058 * 5 3 2 8 8 C 1.53000 * 109.47205 * 180.02562 * 5 3 2 9 9 H 1.08992 * 109.49734 * 179.97438 * 8 5 3 10 10 C 1.53040 * 109.49675 * 299.99863 * 8 5 3 11 11 C 1.53040 * 109.53752 * 181.31336 * 10 8 5 12 12 C 1.53187 * 109.31490 * 298.63355 * 11 10 8 13 13 N 1.46925 * 108.77317 * 54.63877 * 12 11 10 14 14 S 1.65601 * 120.63327 * 126.36702 * 13 12 11 15 15 O 1.42096 * 104.27550 * 333.92891 * 14 13 12 16 16 O 1.42097 * 104.27967 * 206.06734 * 14 13 12 17 17 C 1.81399 * 104.44938 * 89.99777 * 14 13 12 18 18 C 1.53002 * 109.47162 * 180.02562 * 17 14 13 19 19 C 1.50706 * 109.46925 * 179.97438 * 18 17 14 20 20 H 1.07999 * 120.00196 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99394 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00338 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99424 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47474 * 90.00322 * 23 21 19 25 25 H 1.48507 * 109.46754 * 210.00056 * 23 21 19 26 26 H 1.48498 * 109.47278 * 329.99887 * 23 21 19 27 27 C 1.46931 * 118.73652 * 306.63923 * 13 12 11 28 28 H 1.09002 * 109.47066 * 59.99755 * 1 2 3 29 29 H 1.08993 * 109.47397 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46857 * 300.00425 * 1 2 3 31 31 H 1.08999 * 109.46836 * 179.97438 * 6 5 3 32 32 H 1.08993 * 109.47069 * 300.00108 * 6 5 3 33 33 H 1.09000 * 109.46935 * 60.00234 * 6 5 3 34 34 H 1.09001 * 109.47327 * 299.99788 * 7 5 3 35 35 H 1.08993 * 109.47366 * 59.99799 * 7 5 3 36 36 H 1.08999 * 109.46727 * 180.02562 * 7 5 3 37 37 H 1.09009 * 109.46171 * 61.29850 * 10 8 5 38 38 H 1.08996 * 109.46195 * 301.34083 * 10 8 5 39 39 H 1.09010 * 109.49542 * 178.68117 * 11 10 8 40 40 H 1.08996 * 109.49690 * 58.59201 * 11 10 8 41 41 H 1.08997 * 109.59085 * 294.84973 * 12 11 10 42 42 H 1.09005 * 109.70242 * 174.48993 * 12 11 10 43 43 H 1.09004 * 109.47089 * 300.00001 * 17 14 13 44 44 H 1.09004 * 109.47568 * 60.00012 * 17 14 13 45 45 H 1.09000 * 109.46497 * 299.99702 * 18 17 14 46 46 H 1.08996 * 109.46876 * 60.00092 * 18 17 14 47 47 H 0.96996 * 119.99730 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.58430 * 173.15135 * 27 13 12 49 49 H 1.09002 * 109.58356 * 293.57231 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.1129 0.5814 -1.2502 7 6 4.1139 0.5809 1.2483 8 6 4.0003 2.7419 0.0002 9 1 5.0887 2.7994 0.0002 10 6 3.4530 3.4371 -1.2485 11 6 3.9137 4.8964 -1.2653 12 6 3.3624 5.6161 -0.0305 13 7 3.7641 4.8704 1.1700 14 16 4.5561 5.6305 2.4099 15 8 5.2121 6.7263 1.7870 16 8 5.2973 4.5946 3.0396 17 6 3.2310 6.2183 3.5004 18 6 3.8424 6.9474 4.6986 19 6 2.7415 7.4363 5.6043 20 1 1.7091 7.2464 5.3505 21 6 3.0525 8.1261 6.7569 22 7 4.3097 8.3578 7.0657 23 14 1.6880 8.7314 7.8799 24 1 1.3747 7.6856 8.8865 25 1 2.1294 9.9687 8.5726 26 1 0.4753 9.0215 7.0734 27 6 3.4550 3.4360 1.2470 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 5.2014 0.6388 -1.2508 32 1 3.8038 -0.4638 -1.2502 33 1 3.7228 1.0757 -2.1399 34 1 3.7245 1.0748 2.1386 35 1 3.8048 -0.4643 1.2483 36 1 5.2023 0.6383 1.2481 37 1 2.3636 3.4005 -1.2365 38 1 3.8233 2.9290 -2.1388 39 1 3.5430 5.3846 -2.1668 40 1 5.0030 4.9341 -1.2524 41 1 2.2748 5.6585 -0.0875 42 1 3.7657 6.6277 0.0158 43 1 2.5845 6.9023 2.9506 44 1 2.6457 5.3685 3.8518 45 1 4.4891 6.2637 5.2485 46 1 4.4273 7.7972 4.3469 47 1 4.5284 8.8434 7.8764 48 1 3.9213 3.0089 2.1348 49 1 2.3750 3.2971 1.2962 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093022810.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:02 Heat of formation + Delta-G solvation = -193.822783 kcal Electronic energy + Delta-G solvation = -30638.886750 eV Core-core repulsion = 26498.953289 eV Total energy + Delta-G solvation = -4139.933461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.17612 -39.70050 -38.26256 -37.40758 -37.03082 -36.51425 -35.92466 -33.18582 -33.10642 -31.05843 -28.60335 -28.51461 -27.61816 -25.36424 -24.96456 -23.87182 -23.50493 -21.69033 -20.71715 -19.77559 -19.09013 -18.43419 -18.22667 -17.57123 -17.35350 -17.08747 -16.83987 -16.55490 -15.86054 -15.63398 -15.22251 -15.15128 -15.05299 -14.93312 -14.54121 -14.47261 -14.17071 -14.04323 -13.75770 -13.39493 -13.33402 -13.24814 -13.22039 -13.04424 -12.96707 -12.95733 -12.82319 -12.81557 -12.47446 -12.29152 -12.25576 -12.15215 -12.03849 -11.93042 -11.77239 -11.51338 -11.37177 -11.21092 -11.20222 -10.81746 -10.67334 -9.83293 -8.28548 -6.43128 -0.73999 1.19352 1.38488 1.40754 1.52054 1.69638 1.78870 2.35984 2.80772 3.04251 3.12353 3.38738 3.59339 3.75584 3.83768 3.99792 4.02341 4.07531 4.07989 4.17842 4.32796 4.35023 4.38141 4.44127 4.53982 4.58797 4.70437 4.74083 4.76460 4.82229 4.84669 4.89134 4.95746 5.01845 5.03617 5.10417 5.13661 5.22158 5.22923 5.27194 5.30925 5.35589 5.40581 5.65113 5.65919 5.69216 6.03405 6.69761 6.78531 7.26985 8.83785 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014246 B = 0.003018 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.984411 B = 9274.605417 C =10154.696426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.467 3.533 4 O -0.517 6.517 5 C -0.045 4.045 6 C -0.138 4.138 7 C -0.151 4.151 8 C -0.080 4.080 9 H 0.090 0.910 10 C -0.123 4.123 11 C -0.125 4.125 12 C 0.108 3.892 13 N -0.992 5.992 14 S 2.613 3.387 15 O -0.990 6.990 16 O -0.989 6.989 17 C -0.592 4.592 18 C 0.023 3.977 19 C -0.542 4.542 20 H 0.073 0.927 21 C -0.003 4.003 22 N -0.933 5.933 23 Si 0.975 3.025 24 H -0.269 1.269 25 H -0.280 1.280 26 H -0.259 1.259 27 C 0.102 3.898 28 H 0.063 0.937 29 H 0.128 0.872 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.007 0.993 46 H 0.007 0.993 47 H 0.268 0.732 48 H 0.081 0.919 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.120 -19.644 -21.032 29.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.311 3.689 4 O -0.406 6.406 5 C -0.046 4.046 6 C -0.195 4.195 7 C -0.208 4.208 8 C -0.100 4.100 9 H 0.108 0.892 10 C -0.160 4.160 11 C -0.164 4.164 12 C -0.017 4.017 13 N -0.831 5.831 14 S 2.711 3.289 15 O -0.981 6.981 16 O -0.980 6.980 17 C -0.723 4.723 18 C -0.016 4.016 19 C -0.581 4.581 20 H 0.091 0.909 21 C -0.202 4.202 22 N -0.572 5.572 23 Si 0.799 3.201 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.183 1.183 27 C -0.022 4.022 28 H 0.082 0.918 29 H 0.146 0.854 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.155 0.845 44 H 0.153 0.847 45 H 0.025 0.975 46 H 0.025 0.975 47 H 0.077 0.923 48 H 0.100 0.900 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.295 -19.196 -20.846 28.829 hybrid contribution -1.144 0.839 1.231 1.878 sum -6.440 -18.357 -19.615 27.626 Atomic orbital electron populations 1.23503 0.75229 1.05456 1.02354 1.86496 1.24482 1.32886 1.83560 1.24052 0.92288 0.81228 0.71291 1.90577 1.67702 1.36545 1.45729 1.20615 0.86260 0.96937 1.00824 1.21929 1.02756 1.00905 0.93934 1.22019 1.02898 1.01363 0.94550 1.21367 1.01195 0.91585 0.95853 0.89181 1.21856 1.02541 0.94909 0.96695 1.21830 1.00974 0.96251 0.97347 1.21684 1.00780 0.95305 0.83918 1.57513 1.76922 1.17604 1.31055 1.04689 0.76502 0.73311 0.74369 1.93480 1.73286 1.56385 1.74919 1.93472 1.69748 1.57026 1.77703 1.30435 1.17931 1.11599 1.12351 1.18811 0.96677 0.94505 0.91633 1.21498 0.93482 1.36293 1.06816 0.90929 1.26130 0.98466 0.95902 0.99663 1.70099 1.19391 1.41459 1.26279 0.85293 0.78625 0.77865 0.78354 1.19452 1.20544 1.18310 1.21931 1.02353 0.78574 0.99373 0.91826 0.85366 0.92508 0.89572 0.90192 0.91282 0.92926 0.89676 0.89719 0.90140 0.89745 0.88614 0.92128 0.90086 0.89686 0.84485 0.84722 0.97492 0.97487 0.92277 0.90038 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.52 16 2 O -0.36 -5.78 10.37 -51.41 -0.53 -6.31 16 3 C 0.47 8.84 5.95 71.24 0.42 9.27 16 4 O -0.52 -12.13 11.12 21.96 0.24 -11.88 16 5 C -0.04 -0.72 0.53 -52.93 -0.03 -0.75 16 6 C -0.14 -1.47 8.06 71.98 0.58 -0.89 16 7 C -0.15 -2.35 8.05 71.98 0.58 -1.77 16 8 C -0.08 -1.62 1.66 -10.86 -0.02 -1.64 16 9 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 10 C -0.12 -2.22 4.54 30.62 0.14 -2.08 16 11 C -0.13 -2.45 6.08 30.67 0.19 -2.27 16 12 C 0.11 2.66 6.43 86.36 0.56 3.22 16 13 N -0.99 -29.23 3.23 -513.85 -1.66 -30.89 16 14 S 2.61 101.15 5.45 -56.49 -0.31 100.84 16 15 O -0.99 -43.29 16.59 -127.65 -2.12 -45.40 16 16 O -0.99 -42.83 16.58 -127.65 -2.12 -44.95 16 17 C -0.59 -24.38 6.12 71.98 0.44 -23.94 16 18 C 0.02 1.23 4.98 29.85 0.15 1.38 16 19 C -0.54 -31.14 9.11 25.60 0.23 -30.90 16 20 H 0.07 3.89 7.74 -2.91 -0.02 3.86 16 21 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 22 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 23 Si 0.98 44.18 29.54 68.60 2.03 46.20 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 26 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 27 C 0.10 2.69 4.93 86.22 0.43 3.11 16 28 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 29 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.76 8.13 -2.38 -0.02 0.74 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.71 8.11 -2.39 -0.02 0.70 16 33 H 0.07 0.69 6.40 -2.39 -0.02 0.67 16 34 H 0.05 0.98 6.57 -2.39 -0.02 0.96 16 35 H 0.08 1.06 8.11 -2.39 -0.02 1.05 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 1.65 5.55 -2.38 -0.01 1.64 16 38 H 0.08 1.15 6.36 -2.39 -0.02 1.14 16 39 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.08 2.24 6.86 -2.38 -0.02 2.22 16 43 H 0.14 5.06 8.14 -2.39 -0.02 5.04 16 44 H 0.13 5.02 8.14 -2.39 -0.02 5.00 16 45 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 48 H 0.08 2.27 5.46 -2.39 -0.01 2.26 16 49 H 0.09 2.33 5.41 -2.39 -0.01 2.31 16 Total: -1.00 -77.82 390.65 2.08 -75.74 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.93 Total: 19.53 kcal Atomic # 6 Polarization: -50.77 SS G_CDS: 5.32 Total: -45.45 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -1.37 Total: -88.32 kcal Atomic # 8 Polarization: -104.03 SS G_CDS: -4.52 Total: -108.55 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 101.15 SS G_CDS: -0.31 Total: 100.84 kcal Total: -77.82 2.08 -75.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093022810.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.083 kcal (2) G-P(sol) polarization free energy of solvation -77.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds