Wall clock time and date at job start Wed Apr 1 2020 04:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47063 * 2 1 4 4 C 1.53005 * 109.47106 * 120.00103 * 2 1 3 5 5 C 1.50704 * 109.47135 * 239.99832 * 2 1 3 6 6 C 1.40468 * 119.76569 * 179.72429 * 5 2 1 7 7 C 1.36604 * 118.30895 * 179.75224 * 6 5 2 8 8 C 1.41162 * 117.81125 * 0.50938 * 7 6 5 9 9 O 1.22062 * 120.34978 * 179.72305 * 8 7 6 10 10 N 1.34671 * 119.29945 * 359.74717 * 8 7 6 11 11 C 1.46503 * 119.17036 * 179.97438 * 10 8 7 12 12 N 1.46894 * 109.46796 * 254.97824 * 11 10 8 13 13 C 1.46902 * 111.00002 * 155.00019 * 12 11 10 14 14 C 1.50702 * 109.47070 * 285.38275 * 13 12 11 15 15 H 1.08001 * 120.00173 * 4.00036 * 14 13 12 16 16 C 1.37878 * 120.00214 * 184.00088 * 14 13 12 17 17 N 1.31514 * 119.99817 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00032 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47105 * 90.00009 * 18 16 14 20 20 H 1.48506 * 109.46632 * 210.00058 * 18 16 14 21 21 H 1.48500 * 109.47054 * 329.99540 * 18 16 14 22 22 C 1.46898 * 111.00216 * 278.94856 * 12 11 10 23 23 C 1.52998 * 109.47479 * 162.23773 * 22 12 11 24 24 F 1.39908 * 109.47003 * 66.54608 * 23 22 12 25 25 F 1.39896 * 109.47389 * 186.54446 * 23 22 12 26 26 F 1.39902 * 109.47218 * 306.55128 * 23 22 12 27 27 N 1.28384 * 121.66029 * 359.97438 * 10 8 7 28 28 H 1.09001 * 109.46969 * 60.00272 * 1 2 3 29 29 H 1.09006 * 109.46949 * 299.99944 * 1 2 3 30 30 H 1.09004 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47356 * 59.99821 * 3 2 1 32 32 H 1.08997 * 109.47021 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47006 * 299.99706 * 3 2 1 34 34 H 1.08993 * 109.47326 * 59.99479 * 4 2 1 35 35 H 1.08995 * 109.47142 * 180.02562 * 4 2 1 36 36 H 1.09004 * 109.46671 * 299.99748 * 4 2 1 37 37 H 1.07995 * 120.84410 * 0.02562 * 6 5 2 38 38 H 1.08010 * 121.09126 * 180.26019 * 7 6 5 39 39 H 1.09002 * 109.46928 * 14.97857 * 11 10 8 40 40 H 1.08998 * 109.47195 * 134.97594 * 11 10 8 41 41 H 1.09005 * 109.46760 * 45.37830 * 13 12 11 42 42 H 1.08999 * 109.47389 * 165.38124 * 13 12 11 43 43 H 0.96999 * 120.00115 * 179.97438 * 17 16 14 44 44 H 1.08997 * 109.47401 * 282.24182 * 22 12 11 45 45 H 1.09006 * 109.47126 * 42.24211 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 2.0324 -0.7105 -1.2305 6 6 3.4144 -0.8309 -1.4508 7 6 3.8369 -1.4851 -2.5731 8 6 2.8533 -1.9914 -3.4499 9 8 3.1790 -2.5793 -4.4688 10 7 1.5517 -1.8186 -3.1505 11 6 0.5332 -2.3447 -4.0628 12 7 -0.0651 -1.2371 -4.8198 13 6 -0.6146 -1.7093 -6.0978 14 6 0.5133 -1.9847 -7.0585 15 1 1.5377 -1.8872 -6.7308 16 6 0.2374 -2.3612 -8.3559 17 7 -1.0101 -2.4804 -8.7548 18 14 1.6355 -2.7032 -9.5465 19 1 2.0088 -4.1386 -9.4724 20 1 1.2004 -2.3755 -10.9281 21 1 2.8086 -1.8673 -9.1857 22 6 -1.0934 -0.5516 -4.0259 23 6 -1.3751 0.8236 -4.6343 24 9 -1.9671 0.6647 -5.8920 25 9 -2.2416 1.5352 -3.7977 26 9 -0.1743 1.5284 -4.7700 27 7 1.1809 -1.2044 -2.0859 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6767 1.9564 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 -1.7489 1.2493 35 1 3.1300 -0.7209 1.2495 36 1 1.6767 -0.2074 2.1392 37 1 4.1249 -0.4207 -0.7485 38 1 4.8890 -1.6073 -2.7847 39 1 0.9942 -3.0502 -4.7541 40 1 -0.2416 -2.8525 -3.4884 41 1 -1.1830 -2.6247 -5.9327 42 1 -1.2698 -0.9452 -6.5160 43 1 -1.2042 -2.7449 -9.6676 44 1 -2.0085 -1.1439 -4.0273 45 1 -0.7408 -0.4303 -3.0016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176872593.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:58 Heat of formation + Delta-G solvation = -117.889559 kcal Electronic energy + Delta-G solvation = -33079.072409 eV Core-core repulsion = 28297.423720 eV Total energy + Delta-G solvation = -4781.648690 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.56254 -47.14241 -46.95160 -41.85734 -38.34379 -37.21263 -36.28143 -33.63791 -32.56239 -30.89487 -29.20299 -27.63028 -27.48105 -27.22340 -25.37883 -24.30220 -23.11048 -22.72588 -20.97200 -20.16982 -18.17847 -17.99527 -17.83949 -17.01434 -16.87255 -16.56961 -16.12045 -15.98626 -15.36098 -14.68100 -14.37118 -14.21007 -14.18610 -13.97936 -13.84544 -13.77048 -13.57318 -13.47464 -13.26191 -13.21303 -13.15367 -12.84747 -12.80528 -12.34415 -12.27700 -12.07132 -11.86143 -11.76393 -11.64004 -11.37599 -11.17954 -11.06726 -11.01885 -10.69516 -10.67706 -10.65614 -10.32675 -9.94245 -9.36803 -9.27487 -8.45325 -8.22979 -7.82004 -6.03505 -4.04353 0.69519 1.82193 2.50104 3.20798 3.37551 3.42569 3.51237 3.61570 4.06689 4.17319 4.36095 4.43801 4.53741 4.55978 4.67666 4.77090 4.79869 4.91804 5.05980 5.17646 5.30939 5.34803 5.38751 5.47453 5.52104 5.57030 5.60508 5.64478 5.68912 5.76599 5.82526 5.84669 5.93157 5.99291 6.11145 6.13383 6.23251 6.36389 6.73744 7.00853 7.63016 7.67222 7.93182 8.03274 8.32095 8.47427 9.04837 9.60439 11.07036 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011362 B = 0.004585 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.747384 B = 6105.462708 C = 7860.667050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.002 3.998 3 C -0.141 4.141 4 C -0.138 4.138 5 C 0.051 3.949 6 C -0.067 4.067 7 C -0.188 4.188 8 C 0.479 3.521 9 O -0.515 6.515 10 N -0.332 5.332 11 C 0.286 3.714 12 N -0.537 5.537 13 C 0.173 3.827 14 C -0.510 4.510 15 H 0.070 0.930 16 C 0.060 3.940 17 N -0.897 5.897 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.288 1.288 21 H -0.272 1.272 22 C 0.002 3.998 23 C 0.457 3.543 24 F -0.170 7.170 25 F -0.195 7.195 26 F -0.176 7.176 27 N -0.211 5.211 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.144 0.856 38 H 0.158 0.842 39 H 0.140 0.860 40 H 0.068 0.932 41 H 0.000 1.000 42 H 0.068 0.932 43 H 0.262 0.738 44 H 0.075 0.925 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.133 5.357 21.702 22.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.000 4.000 3 C -0.199 4.199 4 C -0.197 4.197 5 C -0.120 4.120 6 C -0.090 4.090 7 C -0.218 4.218 8 C 0.276 3.724 9 O -0.391 6.391 10 N -0.154 5.154 11 C 0.077 3.923 12 N -0.263 5.263 13 C 0.049 3.951 14 C -0.548 4.548 15 H 0.088 0.912 16 C -0.142 4.142 17 N -0.537 5.537 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.197 1.197 22 C -0.129 4.129 23 C 0.403 3.597 24 F -0.152 7.152 25 F -0.177 7.177 26 F -0.157 7.157 27 N -0.034 5.034 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.161 0.839 38 H 0.175 0.825 39 H 0.158 0.842 40 H 0.085 0.915 41 H 0.018 0.982 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.641 5.157 20.519 21.322 hybrid contribution 0.941 -0.378 -0.707 1.236 sum 3.582 4.780 19.812 20.693 Atomic orbital electron populations 1.21754 0.92951 1.02566 1.01888 1.19240 0.96758 0.94307 0.89670 1.21910 1.01145 0.94233 1.02589 1.21894 1.01129 1.00525 0.96103 1.21532 0.89992 1.03113 0.97356 1.22088 0.96027 0.94339 0.96553 1.22753 1.01187 1.02452 0.95425 1.17995 0.83070 0.83191 0.88134 1.91051 1.79861 1.42213 1.25989 1.47102 1.08559 1.43626 1.16114 1.22439 0.88716 0.91238 0.89921 1.61676 1.30671 1.28375 1.05565 1.20378 0.96489 0.96085 0.82105 1.21131 0.93263 1.45460 0.94942 0.91173 1.24916 0.95706 0.95431 0.98104 1.69951 1.17766 1.47953 1.18000 0.86459 0.82373 0.78667 0.79782 1.20635 1.21345 1.19684 1.23340 0.98534 0.91237 0.99759 1.20519 0.73922 0.88690 0.76612 1.93160 1.84258 1.95181 1.42584 1.93126 1.71274 1.81249 1.72034 1.93171 1.45849 1.80903 1.95775 1.70529 1.33724 1.03991 0.95170 0.92031 0.92458 0.92040 0.91675 0.92326 0.92052 0.92320 0.92340 0.91710 0.83865 0.82475 0.84202 0.91471 0.98202 0.91408 0.92860 0.90672 0.86519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 7.69 37.16 0.29 -0.89 16 2 C 0.00 0.02 0.85 -155.65 -0.13 -0.11 16 3 C -0.14 -1.05 8.29 37.16 0.31 -0.74 16 4 C -0.14 -0.90 8.29 37.16 0.31 -0.59 16 5 C 0.05 0.58 5.67 -82.35 -0.47 0.12 16 6 C -0.07 -0.70 8.80 -39.33 -0.35 -1.05 16 7 C -0.19 -2.53 10.13 -39.06 -0.40 -2.93 16 8 C 0.48 8.73 7.47 -15.20 -0.11 8.62 16 9 O -0.52 -11.59 16.46 4.86 0.08 -11.51 16 10 N -0.33 -5.69 3.45 -66.35 -0.23 -5.92 16 11 C 0.29 5.36 5.48 -63.32 -0.35 5.01 16 12 N -0.54 -11.14 4.29 -239.98 -1.03 -12.17 16 13 C 0.17 4.32 4.53 -4.97 -0.02 4.30 16 14 C -0.51 -14.45 8.46 -34.44 -0.29 -14.74 16 15 H 0.07 2.09 7.79 -52.49 -0.41 1.68 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 18 Si 0.90 22.68 29.54 -169.99 -5.02 17.66 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 22 C 0.00 0.03 4.92 -3.83 -0.02 0.01 16 23 C 0.46 8.36 3.25 37.16 0.12 8.48 16 24 F -0.17 -3.58 14.45 2.25 0.03 -3.55 16 25 F -0.20 -3.13 17.32 2.25 0.04 -3.09 16 26 F -0.18 -3.50 17.12 2.25 0.04 -3.46 16 27 N -0.21 -2.99 7.70 33.73 0.26 -2.73 16 28 H 0.06 0.63 7.85 -51.93 -0.41 0.23 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.57 8.06 -51.93 -0.42 0.15 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.37 7.40 -51.93 -0.38 -0.01 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.32 7.44 -51.93 -0.39 -0.06 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.14 0.97 7.22 -52.49 -0.38 0.59 16 38 H 0.16 1.78 8.06 -52.48 -0.42 1.36 16 39 H 0.14 3.02 6.02 -51.93 -0.31 2.71 16 40 H 0.07 1.07 7.92 -51.93 -0.41 0.66 16 41 H 0.00 0.00 8.02 -51.93 -0.42 -0.41 16 42 H 0.07 1.81 4.96 -51.93 -0.26 1.55 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.08 1.17 8.03 -51.93 -0.42 0.76 16 45 H 0.12 1.76 5.91 -51.93 -0.31 1.46 16 LS Contribution 377.91 15.07 5.70 5.70 Total: -1.00 -33.15 377.91 -6.78 -39.94 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -6.18 Total: -2.16 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -1.21 Total: 7.11 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.26 Total: -46.63 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.08 Total: -11.51 kcal Atomic # 9 Polarization: -10.21 SS G_CDS: 0.11 Total: -10.10 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.15 -6.78 -39.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176872593.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.952 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds