Wall clock time and date at job start Wed Apr 1 2020 04:38:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53003 * 109.47063 * 2 1
4 4 C 1.53005 * 109.47106 * 120.00103 * 2 1 3
5 5 C 1.50704 * 109.47135 * 239.99832 * 2 1 3
6 6 C 1.40468 * 119.76569 * 179.72429 * 5 2 1
7 7 C 1.36604 * 118.30895 * 179.75224 * 6 5 2
8 8 C 1.41162 * 117.81125 * 0.50938 * 7 6 5
9 9 O 1.22062 * 120.34978 * 179.72305 * 8 7 6
10 10 N 1.34671 * 119.29945 * 359.74717 * 8 7 6
11 11 C 1.46503 * 119.17036 * 179.97438 * 10 8 7
12 12 N 1.46894 * 109.46796 * 254.97824 * 11 10 8
13 13 C 1.46902 * 111.00002 * 155.00019 * 12 11 10
14 14 C 1.50702 * 109.47070 * 285.38275 * 13 12 11
15 15 H 1.08001 * 120.00173 * 4.00036 * 14 13 12
16 16 C 1.37878 * 120.00214 * 184.00088 * 14 13 12
17 17 N 1.31514 * 119.99817 * 359.97438 * 16 14 13
18 18 Si 1.86799 * 120.00032 * 180.02562 * 16 14 13
19 19 H 1.48495 * 109.47105 * 90.00009 * 18 16 14
20 20 H 1.48506 * 109.46632 * 210.00058 * 18 16 14
21 21 H 1.48500 * 109.47054 * 329.99540 * 18 16 14
22 22 C 1.46898 * 111.00216 * 278.94856 * 12 11 10
23 23 C 1.52998 * 109.47479 * 162.23773 * 22 12 11
24 24 F 1.39908 * 109.47003 * 66.54608 * 23 22 12
25 25 F 1.39896 * 109.47389 * 186.54446 * 23 22 12
26 26 F 1.39902 * 109.47218 * 306.55128 * 23 22 12
27 27 N 1.28384 * 121.66029 * 359.97438 * 10 8 7
28 28 H 1.09001 * 109.46969 * 60.00272 * 1 2 3
29 29 H 1.09006 * 109.46949 * 299.99944 * 1 2 3
30 30 H 1.09004 * 109.46955 * 180.02562 * 1 2 3
31 31 H 1.08994 * 109.47356 * 59.99821 * 3 2 1
32 32 H 1.08997 * 109.47021 * 180.02562 * 3 2 1
33 33 H 1.09001 * 109.47006 * 299.99706 * 3 2 1
34 34 H 1.08993 * 109.47326 * 59.99479 * 4 2 1
35 35 H 1.08995 * 109.47142 * 180.02562 * 4 2 1
36 36 H 1.09004 * 109.46671 * 299.99748 * 4 2 1
37 37 H 1.07995 * 120.84410 * 0.02562 * 6 5 2
38 38 H 1.08010 * 121.09126 * 180.26019 * 7 6 5
39 39 H 1.09002 * 109.46928 * 14.97857 * 11 10 8
40 40 H 1.08998 * 109.47195 * 134.97594 * 11 10 8
41 41 H 1.09005 * 109.46760 * 45.37830 * 13 12 11
42 42 H 1.08999 * 109.47389 * 165.38124 * 13 12 11
43 43 H 0.96999 * 120.00115 * 179.97438 * 17 16 14
44 44 H 1.08997 * 109.47401 * 282.24182 * 22 12 11
45 45 H 1.09006 * 109.47126 * 42.24211 * 22 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 1.2493
5 6 2.0324 -0.7105 -1.2305
6 6 3.4144 -0.8309 -1.4508
7 6 3.8369 -1.4851 -2.5731
8 6 2.8533 -1.9914 -3.4499
9 8 3.1790 -2.5793 -4.4688
10 7 1.5517 -1.8186 -3.1505
11 6 0.5332 -2.3447 -4.0628
12 7 -0.0651 -1.2371 -4.8198
13 6 -0.6146 -1.7093 -6.0978
14 6 0.5133 -1.9847 -7.0585
15 1 1.5377 -1.8872 -6.7308
16 6 0.2374 -2.3612 -8.3559
17 7 -1.0101 -2.4804 -8.7548
18 14 1.6355 -2.7032 -9.5465
19 1 2.0088 -4.1386 -9.4724
20 1 1.2004 -2.3755 -10.9281
21 1 2.8086 -1.8673 -9.1857
22 6 -1.0934 -0.5516 -4.0259
23 6 -1.3751 0.8236 -4.6343
24 9 -1.9671 0.6647 -5.8920
25 9 -2.2416 1.5352 -3.7977
26 9 -0.1743 1.5284 -4.7700
27 7 1.1809 -1.2044 -2.0859
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 1.6767 1.9564 0.8899
32 1 3.1300 1.4425 -0.0005
33 1 1.6767 1.9563 -0.8900
34 1 1.6767 -1.7489 1.2493
35 1 3.1300 -0.7209 1.2495
36 1 1.6767 -0.2074 2.1392
37 1 4.1249 -0.4207 -0.7485
38 1 4.8890 -1.6073 -2.7847
39 1 0.9942 -3.0502 -4.7541
40 1 -0.2416 -2.8525 -3.4884
41 1 -1.1830 -2.6247 -5.9327
42 1 -1.2698 -0.9452 -6.5160
43 1 -1.2042 -2.7449 -9.6676
44 1 -2.0085 -1.1439 -4.0273
45 1 -0.7408 -0.4303 -3.0016
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000176872593.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:38:58
Heat of formation + Delta-G solvation = -117.889559 kcal
Electronic energy + Delta-G solvation = -33079.072409 eV
Core-core repulsion = 28297.423720 eV
Total energy + Delta-G solvation = -4781.648690 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.156 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-49.56254 -47.14241 -46.95160 -41.85734 -38.34379 -37.21263 -36.28143 -33.63791
-32.56239 -30.89487 -29.20299 -27.63028 -27.48105 -27.22340 -25.37883 -24.30220
-23.11048 -22.72588 -20.97200 -20.16982 -18.17847 -17.99527 -17.83949 -17.01434
-16.87255 -16.56961 -16.12045 -15.98626 -15.36098 -14.68100 -14.37118 -14.21007
-14.18610 -13.97936 -13.84544 -13.77048 -13.57318 -13.47464 -13.26191 -13.21303
-13.15367 -12.84747 -12.80528 -12.34415 -12.27700 -12.07132 -11.86143 -11.76393
-11.64004 -11.37599 -11.17954 -11.06726 -11.01885 -10.69516 -10.67706 -10.65614
-10.32675 -9.94245 -9.36803 -9.27487 -8.45325 -8.22979 -7.82004 -6.03505
-4.04353 0.69519 1.82193 2.50104 3.20798 3.37551 3.42569 3.51237
3.61570 4.06689 4.17319 4.36095 4.43801 4.53741 4.55978 4.67666
4.77090 4.79869 4.91804 5.05980 5.17646 5.30939 5.34803 5.38751
5.47453 5.52104 5.57030 5.60508 5.64478 5.68912 5.76599 5.82526
5.84669 5.93157 5.99291 6.11145 6.13383 6.23251 6.36389 6.73744
7.00853 7.63016 7.67222 7.93182 8.03274 8.32095 8.47427 9.04837
9.60439 11.07036
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.011362 B = 0.004585 C = 0.003561
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2463.747384 B = 6105.462708 C = 7860.667050
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C 0.002 3.998
3 C -0.141 4.141
4 C -0.138 4.138
5 C 0.051 3.949
6 C -0.067 4.067
7 C -0.188 4.188
8 C 0.479 3.521
9 O -0.515 6.515
10 N -0.332 5.332
11 C 0.286 3.714
12 N -0.537 5.537
13 C 0.173 3.827
14 C -0.510 4.510
15 H 0.070 0.930
16 C 0.060 3.940
17 N -0.897 5.897
18 Si 0.899 3.101
19 H -0.280 1.280
20 H -0.288 1.288
21 H -0.272 1.272
22 C 0.002 3.998
23 C 0.457 3.543
24 F -0.170 7.170
25 F -0.195 7.195
26 F -0.176 7.176
27 N -0.211 5.211
28 H 0.061 0.939
29 H 0.056 0.944
30 H 0.061 0.939
31 H 0.064 0.936
32 H 0.058 0.942
33 H 0.060 0.940
34 H 0.058 0.942
35 H 0.058 0.942
36 H 0.064 0.936
37 H 0.144 0.856
38 H 0.158 0.842
39 H 0.140 0.860
40 H 0.068 0.932
41 H 0.000 1.000
42 H 0.068 0.932
43 H 0.262 0.738
44 H 0.075 0.925
45 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.133 5.357 21.702 22.572
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C 0.000 4.000
3 C -0.199 4.199
4 C -0.197 4.197
5 C -0.120 4.120
6 C -0.090 4.090
7 C -0.218 4.218
8 C 0.276 3.724
9 O -0.391 6.391
10 N -0.154 5.154
11 C 0.077 3.923
12 N -0.263 5.263
13 C 0.049 3.951
14 C -0.548 4.548
15 H 0.088 0.912
16 C -0.142 4.142
17 N -0.537 5.537
18 Si 0.727 3.273
19 H -0.206 1.206
20 H -0.213 1.213
21 H -0.197 1.197
22 C -0.129 4.129
23 C 0.403 3.597
24 F -0.152 7.152
25 F -0.177 7.177
26 F -0.157 7.157
27 N -0.034 5.034
28 H 0.080 0.920
29 H 0.075 0.925
30 H 0.080 0.920
31 H 0.083 0.917
32 H 0.077 0.923
33 H 0.079 0.921
34 H 0.077 0.923
35 H 0.077 0.923
36 H 0.083 0.917
37 H 0.161 0.839
38 H 0.175 0.825
39 H 0.158 0.842
40 H 0.085 0.915
41 H 0.018 0.982
42 H 0.086 0.914
43 H 0.071 0.929
44 H 0.093 0.907
45 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges 2.641 5.157 20.519 21.322
hybrid contribution 0.941 -0.378 -0.707 1.236
sum 3.582 4.780 19.812 20.693
Atomic orbital electron populations
1.21754 0.92951 1.02566 1.01888 1.19240 0.96758 0.94307 0.89670
1.21910 1.01145 0.94233 1.02589 1.21894 1.01129 1.00525 0.96103
1.21532 0.89992 1.03113 0.97356 1.22088 0.96027 0.94339 0.96553
1.22753 1.01187 1.02452 0.95425 1.17995 0.83070 0.83191 0.88134
1.91051 1.79861 1.42213 1.25989 1.47102 1.08559 1.43626 1.16114
1.22439 0.88716 0.91238 0.89921 1.61676 1.30671 1.28375 1.05565
1.20378 0.96489 0.96085 0.82105 1.21131 0.93263 1.45460 0.94942
0.91173 1.24916 0.95706 0.95431 0.98104 1.69951 1.17766 1.47953
1.18000 0.86459 0.82373 0.78667 0.79782 1.20635 1.21345 1.19684
1.23340 0.98534 0.91237 0.99759 1.20519 0.73922 0.88690 0.76612
1.93160 1.84258 1.95181 1.42584 1.93126 1.71274 1.81249 1.72034
1.93171 1.45849 1.80903 1.95775 1.70529 1.33724 1.03991 0.95170
0.92031 0.92458 0.92040 0.91675 0.92326 0.92052 0.92320 0.92340
0.91710 0.83865 0.82475 0.84202 0.91471 0.98202 0.91408 0.92860
0.90672 0.86519
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.18 7.69 37.16 0.29 -0.89 16
2 C 0.00 0.02 0.85 -155.65 -0.13 -0.11 16
3 C -0.14 -1.05 8.29 37.16 0.31 -0.74 16
4 C -0.14 -0.90 8.29 37.16 0.31 -0.59 16
5 C 0.05 0.58 5.67 -82.35 -0.47 0.12 16
6 C -0.07 -0.70 8.80 -39.33 -0.35 -1.05 16
7 C -0.19 -2.53 10.13 -39.06 -0.40 -2.93 16
8 C 0.48 8.73 7.47 -15.20 -0.11 8.62 16
9 O -0.52 -11.59 16.46 4.86 0.08 -11.51 16
10 N -0.33 -5.69 3.45 -66.35 -0.23 -5.92 16
11 C 0.29 5.36 5.48 -63.32 -0.35 5.01 16
12 N -0.54 -11.14 4.29 -239.98 -1.03 -12.17 16
13 C 0.17 4.32 4.53 -4.97 -0.02 4.30 16
14 C -0.51 -14.45 8.46 -34.44 -0.29 -14.74 16
15 H 0.07 2.09 7.79 -52.49 -0.41 1.68 16
16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16
17 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16
18 Si 0.90 22.68 29.54 -169.99 -5.02 17.66 16
19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16
20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
21 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16
22 C 0.00 0.03 4.92 -3.83 -0.02 0.01 16
23 C 0.46 8.36 3.25 37.16 0.12 8.48 16
24 F -0.17 -3.58 14.45 2.25 0.03 -3.55 16
25 F -0.20 -3.13 17.32 2.25 0.04 -3.09 16
26 F -0.18 -3.50 17.12 2.25 0.04 -3.46 16
27 N -0.21 -2.99 7.70 33.73 0.26 -2.73 16
28 H 0.06 0.63 7.85 -51.93 -0.41 0.23 16
29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
30 H 0.06 0.57 8.06 -51.93 -0.42 0.15 16
31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
32 H 0.06 0.37 7.40 -51.93 -0.38 -0.01 16
33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16
34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16
35 H 0.06 0.32 7.44 -51.93 -0.39 -0.06 16
36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
37 H 0.14 0.97 7.22 -52.49 -0.38 0.59 16
38 H 0.16 1.78 8.06 -52.48 -0.42 1.36 16
39 H 0.14 3.02 6.02 -51.93 -0.31 2.71 16
40 H 0.07 1.07 7.92 -51.93 -0.41 0.66 16
41 H 0.00 0.00 8.02 -51.93 -0.42 -0.41 16
42 H 0.07 1.81 4.96 -51.93 -0.26 1.55 16
43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16
44 H 0.08 1.17 8.03 -51.93 -0.42 0.76 16
45 H 0.12 1.76 5.91 -51.93 -0.31 1.46 16
LS Contribution 377.91 15.07 5.70 5.70
Total: -1.00 -33.15 377.91 -6.78 -39.94
By element:
Atomic # 1 Polarization: 4.01 SS G_CDS: -6.18 Total: -2.16 kcal
Atomic # 6 Polarization: 8.32 SS G_CDS: -1.21 Total: 7.11 kcal
Atomic # 7 Polarization: -46.37 SS G_CDS: -0.26 Total: -46.63 kcal
Atomic # 8 Polarization: -11.59 SS G_CDS: 0.08 Total: -11.51 kcal
Atomic # 9 Polarization: -10.21 SS G_CDS: 0.11 Total: -10.10 kcal
Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -33.15 -6.78 -39.94 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000176872593.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -77.952 kcal
(2) G-P(sol) polarization free energy of solvation -33.154 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.106 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal
(6) G-S(sol) free energy of system = (1) + (5) -117.890 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds