Wall clock time and date at job start Wed Apr 1 2020 04:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47063 * 2 1 4 4 C 1.53005 * 109.47106 * 120.00103 * 2 1 3 5 5 C 1.50704 * 109.47135 * 239.99832 * 2 1 3 6 6 C 1.40468 * 119.76569 * 179.72429 * 5 2 1 7 7 C 1.36604 * 118.30895 * 179.75224 * 6 5 2 8 8 C 1.41162 * 117.81125 * 0.50938 * 7 6 5 9 9 O 1.22062 * 120.34978 * 179.72305 * 8 7 6 10 10 N 1.34671 * 119.29945 * 359.74717 * 8 7 6 11 11 C 1.46503 * 119.17036 * 179.97438 * 10 8 7 12 12 N 1.46894 * 109.46796 * 254.97824 * 11 10 8 13 13 C 1.46902 * 111.00002 * 155.00019 * 12 11 10 14 14 C 1.50702 * 109.47070 * 285.38275 * 13 12 11 15 15 H 1.08001 * 120.00173 * 4.00036 * 14 13 12 16 16 C 1.37878 * 120.00214 * 184.00088 * 14 13 12 17 17 N 1.31514 * 119.99817 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00032 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47105 * 90.00009 * 18 16 14 20 20 H 1.48506 * 109.46632 * 210.00058 * 18 16 14 21 21 H 1.48500 * 109.47054 * 329.99540 * 18 16 14 22 22 C 1.46898 * 111.00216 * 278.94856 * 12 11 10 23 23 C 1.52998 * 109.47479 * 162.23773 * 22 12 11 24 24 F 1.39908 * 109.47003 * 66.54608 * 23 22 12 25 25 F 1.39896 * 109.47389 * 186.54446 * 23 22 12 26 26 F 1.39902 * 109.47218 * 306.55128 * 23 22 12 27 27 N 1.28384 * 121.66029 * 359.97438 * 10 8 7 28 28 H 1.09001 * 109.46969 * 60.00272 * 1 2 3 29 29 H 1.09006 * 109.46949 * 299.99944 * 1 2 3 30 30 H 1.09004 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47356 * 59.99821 * 3 2 1 32 32 H 1.08997 * 109.47021 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47006 * 299.99706 * 3 2 1 34 34 H 1.08993 * 109.47326 * 59.99479 * 4 2 1 35 35 H 1.08995 * 109.47142 * 180.02562 * 4 2 1 36 36 H 1.09004 * 109.46671 * 299.99748 * 4 2 1 37 37 H 1.07995 * 120.84410 * 0.02562 * 6 5 2 38 38 H 1.08010 * 121.09126 * 180.26019 * 7 6 5 39 39 H 1.09002 * 109.46928 * 14.97857 * 11 10 8 40 40 H 1.08998 * 109.47195 * 134.97594 * 11 10 8 41 41 H 1.09005 * 109.46760 * 45.37830 * 13 12 11 42 42 H 1.08999 * 109.47389 * 165.38124 * 13 12 11 43 43 H 0.96999 * 120.00115 * 179.97438 * 17 16 14 44 44 H 1.08997 * 109.47401 * 282.24182 * 22 12 11 45 45 H 1.09006 * 109.47126 * 42.24211 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 2.0324 -0.7105 -1.2305 6 6 3.4144 -0.8309 -1.4508 7 6 3.8369 -1.4851 -2.5731 8 6 2.8533 -1.9914 -3.4499 9 8 3.1790 -2.5793 -4.4688 10 7 1.5517 -1.8186 -3.1505 11 6 0.5332 -2.3447 -4.0628 12 7 -0.0651 -1.2371 -4.8198 13 6 -0.6146 -1.7093 -6.0978 14 6 0.5133 -1.9847 -7.0585 15 1 1.5377 -1.8872 -6.7308 16 6 0.2374 -2.3612 -8.3559 17 7 -1.0101 -2.4804 -8.7548 18 14 1.6355 -2.7032 -9.5465 19 1 2.0088 -4.1386 -9.4724 20 1 1.2004 -2.3755 -10.9281 21 1 2.8086 -1.8673 -9.1857 22 6 -1.0934 -0.5516 -4.0259 23 6 -1.3751 0.8236 -4.6343 24 9 -1.9671 0.6647 -5.8920 25 9 -2.2416 1.5352 -3.7977 26 9 -0.1743 1.5284 -4.7700 27 7 1.1809 -1.2044 -2.0859 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6767 1.9564 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 -1.7489 1.2493 35 1 3.1300 -0.7209 1.2495 36 1 1.6767 -0.2074 2.1392 37 1 4.1249 -0.4207 -0.7485 38 1 4.8890 -1.6073 -2.7847 39 1 0.9942 -3.0502 -4.7541 40 1 -0.2416 -2.8525 -3.4884 41 1 -1.1830 -2.6247 -5.9327 42 1 -1.2698 -0.9452 -6.5160 43 1 -1.2042 -2.7449 -9.6676 44 1 -2.0085 -1.1439 -4.0273 45 1 -0.7408 -0.4303 -3.0016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176872593.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:57 Heat of formation + Delta-G solvation = -139.235191 kcal Electronic energy + Delta-G solvation = -33079.998025 eV Core-core repulsion = 28297.423720 eV Total energy + Delta-G solvation = -4782.574306 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.07734 -48.63438 -48.51417 -43.04234 -39.43187 -38.75664 -37.42168 -34.97626 -34.45206 -32.08736 -30.83641 -29.07719 -28.17952 -27.99020 -26.86518 -25.55652 -24.46939 -24.35083 -22.62303 -21.02267 -19.60741 -19.53646 -19.09613 -18.63156 -18.28483 -18.19916 -17.53060 -17.25159 -16.68730 -16.30284 -15.76448 -15.53737 -15.42932 -15.27824 -15.07565 -15.03250 -14.89508 -14.82463 -14.73544 -14.67690 -14.45761 -14.24749 -13.94371 -13.80760 -13.48851 -13.18688 -12.94123 -12.88303 -12.82319 -12.66435 -12.64284 -12.46200 -12.39811 -12.06426 -11.83368 -11.82572 -11.60713 -11.41844 -11.22760 -10.68950 -10.58043 -9.62533 -9.38628 -8.24974 -6.31346 -0.36015 0.70054 1.22349 1.34473 1.34925 1.47959 1.73810 2.32818 2.42475 2.70300 2.91220 3.05074 3.09431 3.10364 3.53039 3.55621 3.78031 3.90613 3.91911 4.10182 4.16854 4.22630 4.23940 4.38143 4.44224 4.61490 4.74693 4.87730 4.92898 4.95800 5.02490 5.04079 5.06675 5.14959 5.17107 5.19878 5.32293 5.46644 5.56194 5.57790 5.59496 5.84073 5.92119 6.26192 6.64973 6.81634 7.31427 7.36252 8.85328 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011362 B = 0.004585 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.747384 B = 6105.462708 C = 7860.667050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.003 3.997 3 C -0.140 4.140 4 C -0.136 4.136 5 C 0.067 3.933 6 C -0.038 4.038 7 C -0.203 4.203 8 C 0.460 3.540 9 O -0.581 6.581 10 N -0.340 5.340 11 C 0.294 3.706 12 N -0.551 5.551 13 C 0.189 3.811 14 C -0.521 4.521 15 H 0.047 0.953 16 C 0.015 3.985 17 N -0.923 5.923 18 Si 0.955 3.045 19 H -0.273 1.273 20 H -0.274 1.274 21 H -0.281 1.281 22 C 0.008 3.992 23 C 0.457 3.543 24 F -0.189 7.189 25 F -0.178 7.178 26 F -0.187 7.187 27 N -0.235 5.235 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.040 0.960 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.196 0.804 38 H 0.177 0.823 39 H 0.102 0.898 40 H 0.094 0.906 41 H -0.012 1.012 42 H 0.053 0.947 43 H 0.266 0.734 44 H 0.094 0.906 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.104 6.641 25.108 26.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.001 3.999 3 C -0.198 4.198 4 C -0.194 4.194 5 C -0.104 4.104 6 C -0.062 4.062 7 C -0.233 4.233 8 C 0.260 3.740 9 O -0.463 6.463 10 N -0.159 5.159 11 C 0.084 3.916 12 N -0.277 5.277 13 C 0.064 3.936 14 C -0.559 4.559 15 H 0.066 0.934 16 C -0.184 4.184 17 N -0.563 5.563 18 Si 0.781 3.219 19 H -0.199 1.199 20 H -0.199 1.199 21 H -0.206 1.206 22 C -0.121 4.121 23 C 0.403 3.597 24 F -0.170 7.170 25 F -0.160 7.160 26 F -0.169 7.169 27 N -0.057 5.057 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.213 0.787 38 H 0.194 0.806 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.006 0.994 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.112 0.888 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.594 6.459 23.975 25.088 hybrid contribution 0.630 -0.660 -1.514 1.767 sum 4.224 5.800 22.461 23.579 Atomic orbital electron populations 1.21778 0.93365 1.02165 1.02041 1.19463 0.96591 0.94999 0.88889 1.21938 1.02283 0.92940 1.02667 1.21903 1.02233 0.99908 0.95333 1.22470 0.90637 1.00250 0.97083 1.22597 0.96374 0.91527 0.95654 1.22848 1.01040 1.03561 0.95802 1.18809 0.84104 0.82861 0.88238 1.91006 1.80713 1.45635 1.28900 1.46822 1.07703 1.44570 1.16836 1.22111 0.89243 0.90338 0.89908 1.61414 1.31836 1.29285 1.05209 1.19961 0.94960 0.94927 0.83751 1.21300 0.93145 1.45402 0.96065 0.93447 1.25611 0.97834 0.95355 0.99589 1.70022 1.19075 1.48689 1.18541 0.85602 0.79419 0.78570 0.78331 1.19880 1.19917 1.20590 1.23415 0.98525 0.90281 0.99922 1.20676 0.73651 0.89272 0.76140 1.93123 1.84525 1.95301 1.44070 1.93153 1.70635 1.80936 1.71255 1.93145 1.46650 1.81225 1.95834 1.70590 1.34466 1.05609 0.95047 0.93916 0.90286 0.92763 0.89563 0.90577 0.94123 0.93140 0.90619 0.89751 0.78662 0.80601 0.87957 0.88834 0.99407 0.92950 0.92522 0.88789 0.84237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 7.69 71.98 0.55 -1.45 16 2 C 0.00 0.04 0.85 -52.92 -0.05 -0.01 16 3 C -0.14 -1.46 8.29 71.98 0.60 -0.87 16 4 C -0.14 -1.09 8.29 71.98 0.60 -0.49 16 5 C 0.07 1.34 5.67 43.31 0.25 1.59 16 6 C -0.04 -0.67 8.80 22.43 0.20 -0.47 16 7 C -0.20 -5.20 10.13 22.61 0.23 -4.97 16 8 C 0.46 17.31 7.47 84.98 0.64 17.94 16 9 O -0.58 -28.01 16.46 -5.52 -0.09 -28.10 16 10 N -0.34 -11.86 3.45 -481.97 -1.67 -13.53 16 11 C 0.29 11.50 5.48 170.81 0.94 12.44 16 12 N -0.55 -23.66 4.29 -913.16 -3.91 -27.57 16 13 C 0.19 9.86 4.53 85.56 0.39 10.25 16 14 C -0.52 -30.94 8.46 25.60 0.22 -30.72 16 15 H 0.05 2.99 7.79 -2.91 -0.02 2.97 16 16 C 0.02 0.90 5.46 84.65 0.46 1.36 16 17 N -0.92 -55.87 13.29 21.45 0.28 -55.58 16 18 Si 0.95 47.88 29.54 68.60 2.03 49.90 16 19 H -0.27 -13.30 7.11 99.48 0.71 -12.59 16 20 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.28 -14.34 7.11 99.48 0.71 -13.63 16 22 C 0.01 0.28 4.92 86.30 0.42 0.71 16 23 C 0.46 16.68 3.25 71.98 0.23 16.92 16 24 F -0.19 -8.08 14.45 44.97 0.65 -7.43 16 25 F -0.18 -5.51 17.32 44.97 0.78 -4.73 16 26 F -0.19 -7.50 17.12 44.97 0.77 -6.73 16 27 N -0.24 -6.42 7.70 -47.21 -0.36 -6.78 16 28 H 0.04 0.79 7.85 -2.39 -0.02 0.77 16 29 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.05 0.87 8.06 -2.39 -0.02 0.85 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.54 7.40 -2.39 -0.02 0.53 16 33 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.07 0.38 7.44 -2.39 -0.02 0.36 16 36 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 37 H 0.20 1.38 7.22 -2.91 -0.02 1.36 16 38 H 0.18 3.72 8.06 -2.91 -0.02 3.70 16 39 H 0.10 4.80 6.02 -2.39 -0.01 4.78 16 40 H 0.09 3.05 7.92 -2.39 -0.02 3.03 16 41 H -0.01 -0.63 8.02 -2.38 -0.02 -0.65 16 42 H 0.05 2.91 4.96 -2.39 -0.01 2.90 16 43 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 44 H 0.09 2.87 8.03 -2.39 -0.02 2.85 16 45 H 0.14 4.09 5.91 -2.38 -0.01 4.08 16 Total: -1.00 -77.27 377.91 5.16 -72.11 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 1.02 Total: 6.22 kcal Atomic # 6 Polarization: 16.56 SS G_CDS: 5.67 Total: 22.23 kcal Atomic # 7 Polarization: -97.81 SS G_CDS: -5.66 Total: -103.47 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.09 Total: -28.10 kcal Atomic # 9 Polarization: -21.09 SS G_CDS: 2.20 Total: -18.89 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.90 kcal Total: -77.27 5.16 -72.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176872593.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.127 kcal (2) G-P(sol) polarization free energy of solvation -77.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds