Wall clock time and date at job start Wed Apr 1 2020 04:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47068 * 2 1 4 4 C 1.52999 * 109.47484 * 120.00146 * 2 1 3 5 5 C 1.52997 * 109.47088 * 64.99611 * 4 2 1 6 6 N 1.46902 * 109.47055 * 176.37801 * 5 4 2 7 7 C 1.46894 * 111.00198 * 299.91314 * 6 5 4 8 8 C 1.50697 * 109.47351 * 293.67063 * 7 6 5 9 9 H 1.08006 * 119.99960 * 2.99490 * 8 7 6 10 10 C 1.37871 * 120.00241 * 182.99233 * 8 7 6 11 11 N 1.31510 * 120.00301 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00236 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47235 * 89.99645 * 12 10 8 14 14 H 1.48493 * 109.47291 * 210.00138 * 12 10 8 15 15 H 1.48506 * 109.46950 * 330.00206 * 12 10 8 16 16 C 1.46903 * 111.00056 * 63.86908 * 6 5 4 17 17 N 1.46497 * 109.47043 * 85.01328 * 16 6 5 18 18 N 1.28389 * 119.17253 * 75.00436 * 17 16 6 19 19 C 1.30404 * 122.45303 * 180.02562 * 18 17 16 20 20 C 1.50701 * 119.76480 * 179.97438 * 19 18 17 21 21 F 1.39902 * 109.47355 * 0.02562 * 20 19 18 22 22 F 1.39902 * 109.46900 * 120.02221 * 20 19 18 23 23 F 1.39898 * 109.47329 * 240.02090 * 20 19 18 24 24 C 1.40468 * 120.46676 * 359.97438 * 19 18 17 25 25 C 1.36597 * 118.31538 * 0.27811 * 24 19 18 26 26 C 1.34670 * 119.17232 * 255.02034 * 17 16 6 27 27 O 1.22066 * 120.35382 * 359.97438 * 26 17 16 28 28 H 1.08994 * 109.47491 * 59.99902 * 1 2 3 29 29 H 1.08998 * 109.47212 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46998 * 300.00003 * 1 2 3 31 31 H 1.09003 * 109.46998 * 239.99997 * 2 1 3 32 32 H 1.09005 * 109.47147 * 180.02562 * 3 2 1 33 33 H 1.09010 * 109.47261 * 300.00004 * 3 2 1 34 34 H 1.09000 * 109.47670 * 60.00358 * 3 2 1 35 35 H 1.09005 * 109.46903 * 305.00190 * 4 2 1 36 36 H 1.08994 * 109.47204 * 185.00069 * 4 2 1 37 37 H 1.08998 * 109.47097 * 56.38307 * 5 4 2 38 38 H 1.09002 * 109.47334 * 296.37949 * 5 4 2 39 39 H 1.08997 * 109.47005 * 53.67143 * 7 6 5 40 40 H 1.09002 * 109.47208 * 173.67082 * 7 6 5 41 41 H 0.97001 * 120.00717 * 179.97438 * 11 10 8 42 42 H 1.09004 * 109.46688 * 325.01898 * 16 6 5 43 43 H 1.08993 * 109.47293 * 205.01865 * 16 6 5 44 44 H 1.08004 * 120.84131 * 180.02562 * 24 19 18 45 45 H 1.08001 * 121.09960 * 179.72652 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1954 1.1879 6 7 2.1986 -2.9063 2.3435 7 6 3.6651 -2.8222 2.3497 8 6 4.2166 -3.5776 1.1681 9 1 3.5437 -4.0300 0.4545 10 6 5.5800 -3.6913 0.9979 11 7 6.3994 -3.1401 1.8664 12 14 6.2636 -4.6271 -0.4672 13 1 6.4493 -3.6943 -1.6076 14 1 7.5708 -5.2303 -0.1032 15 1 5.3140 -5.7008 -0.8556 16 6 1.6367 -2.3954 3.6010 17 7 0.3692 -3.0745 3.8810 18 7 0.3888 -4.2858 4.3062 19 6 -0.7002 -4.9508 4.5749 20 6 -0.6066 -6.3709 5.0705 21 9 0.7382 -6.7462 5.1593 22 9 -1.2012 -6.4642 6.3335 23 9 -1.2700 -7.2207 4.1789 24 6 -1.9600 -4.3528 4.4057 25 6 -2.0104 -3.0662 3.9495 26 6 -0.7873 -2.4127 3.6857 27 8 -0.7782 -1.2611 3.2808 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6055 -0.2618 2.1370 36 1 3.1264 -0.6443 1.2951 37 1 2.0160 -2.6388 0.2678 38 1 0.5484 -2.2749 1.2070 39 1 3.9694 -1.7774 2.2871 40 1 4.0502 -3.2582 3.2715 41 1 7.3587 -3.2204 1.7469 42 1 1.4624 -1.3231 3.5118 43 1 2.3371 -2.5831 4.4147 44 1 -2.8658 -4.8978 4.6269 45 1 -2.9548 -2.5644 3.7989 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178886991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:36 Heat of formation + Delta-G solvation = -115.842662 kcal Electronic energy + Delta-G solvation = -32152.205941 eV Core-core repulsion = 27370.646011 eV Total energy + Delta-G solvation = -4781.559930 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.22620 -47.78070 -47.64765 -42.21668 -38.18562 -37.79482 -35.58541 -34.41281 -32.53861 -31.81572 -28.82459 -28.34597 -26.86724 -26.69278 -25.31019 -23.98952 -23.47060 -23.06446 -20.41193 -19.65244 -19.23508 -18.67270 -18.61510 -17.70606 -16.90448 -16.67449 -16.49102 -15.79551 -15.13406 -15.08149 -14.64713 -14.54323 -14.46526 -14.34541 -14.13757 -14.01398 -13.84308 -13.80162 -13.76258 -13.42729 -13.24403 -13.05923 -12.61277 -12.57022 -12.24860 -11.98951 -11.82709 -11.60191 -11.39857 -11.23322 -10.90580 -10.83912 -10.81395 -10.64547 -10.40078 -10.29415 -10.02475 -9.90137 -9.81026 -9.35050 -8.77595 -8.51444 -7.54408 -6.10834 -4.12003 0.33283 1.13796 1.82301 2.60849 3.13027 3.28116 3.35043 3.39268 3.46061 3.74730 4.19612 4.25226 4.35605 4.40031 4.54279 4.73936 5.17309 5.18178 5.25591 5.27649 5.30438 5.36349 5.47456 5.53127 5.62420 5.69257 5.81703 5.85655 5.96796 6.04915 6.12694 6.15618 6.22129 6.34532 6.52788 6.56124 6.70774 6.82701 7.04512 7.20412 7.42102 7.62909 7.79526 7.93941 8.01101 8.33090 8.92963 9.52155 10.99872 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.008467 B = 0.004302 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3306.163638 B = 6507.760529 C = 9032.915650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 C -0.144 4.144 4 C -0.151 4.151 5 C 0.066 3.934 6 N -0.539 5.539 7 C 0.196 3.804 8 C -0.506 4.506 9 H 0.063 0.937 10 C 0.059 3.941 11 N -0.896 5.896 12 Si 0.897 3.103 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.273 1.273 16 C 0.255 3.745 17 N -0.309 5.309 18 N -0.118 5.118 19 C -0.064 4.064 20 C 0.545 3.455 21 F -0.157 7.157 22 F -0.172 7.172 23 F -0.169 7.169 24 C -0.044 4.044 25 C -0.187 4.187 26 C 0.479 3.521 27 O -0.513 6.513 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.051 0.949 39 H 0.006 0.994 40 H 0.036 0.964 41 H 0.262 0.738 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.156 0.844 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.825 0.078 5.467 17.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.202 4.202 4 C -0.190 4.190 5 C -0.062 4.062 6 N -0.262 5.262 7 C 0.072 3.928 8 C -0.544 4.544 9 H 0.081 0.919 10 C -0.142 4.142 11 N -0.536 5.536 12 Si 0.725 3.275 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.198 1.198 16 C 0.046 3.954 17 N -0.133 5.133 18 N 0.053 4.947 19 C -0.233 4.233 20 C 0.489 3.511 21 F -0.138 7.138 22 F -0.153 7.153 23 F -0.150 7.150 24 C -0.067 4.067 25 C -0.217 4.217 26 C 0.277 3.723 27 O -0.390 6.390 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.024 0.976 40 H 0.054 0.946 41 H 0.072 0.928 42 H 0.119 0.881 43 H 0.125 0.875 44 H 0.174 0.826 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -15.766 0.245 5.210 16.606 hybrid contribution -0.168 0.146 -0.682 0.717 sum -15.934 0.391 4.528 16.569 Atomic orbital electron populations 1.21824 0.95630 1.01476 1.00940 1.20989 0.95372 0.95782 0.98722 1.21820 1.01080 0.96330 1.00927 1.22267 1.02413 0.96956 0.97328 1.22139 0.97550 0.91281 0.95203 1.61959 1.11299 1.53784 0.99199 1.19853 0.77524 0.96484 0.98942 1.21019 0.91164 1.33681 1.08568 0.91927 1.24924 0.96901 0.95781 0.96639 1.69932 1.03187 1.44737 1.35710 0.86503 0.78416 0.80086 0.82488 1.20720 1.21191 1.19788 1.22757 0.81485 0.94410 0.96787 1.47555 1.11179 1.06762 1.47810 1.70653 1.28517 0.95634 0.99893 1.21353 0.91200 0.96624 1.14144 1.17206 0.74665 0.84148 0.75086 1.93291 1.32405 1.92262 1.95858 1.93227 1.84030 1.96585 1.41457 1.93238 1.80948 1.72580 1.68255 1.21839 0.97371 0.95069 0.92452 1.22662 0.99087 0.95532 1.04415 1.18167 0.84970 0.88380 0.80803 1.91008 1.86522 1.16088 1.45402 0.93692 0.92945 0.92646 0.91339 0.92660 0.93332 0.93114 0.92503 0.90244 0.89672 0.93050 0.97604 0.94580 0.92796 0.88122 0.87541 0.82592 0.81359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.95 37.16 0.33 -1.66 16 2 C -0.09 -1.36 2.92 -90.62 -0.26 -1.62 16 3 C -0.14 -1.97 9.19 37.16 0.34 -1.63 16 4 C -0.15 -2.62 4.10 -26.73 -0.11 -2.73 16 5 C 0.07 1.25 4.79 -3.82 -0.02 1.23 16 6 N -0.54 -10.92 4.80 -239.99 -1.15 -12.07 16 7 C 0.20 4.69 4.43 -4.98 -0.02 4.67 16 8 C -0.51 -13.47 8.58 -34.44 -0.30 -13.77 16 9 H 0.06 1.68 7.01 -52.48 -0.37 1.31 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -25.49 13.29 55.43 0.74 -24.75 16 12 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 15 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 16 C 0.25 4.43 5.51 -63.31 -0.35 4.08 16 17 N -0.31 -4.93 3.46 -66.35 -0.23 -5.16 16 18 N -0.12 -1.84 10.27 33.72 0.35 -1.49 16 19 C -0.06 -0.80 6.35 -82.36 -0.52 -1.32 16 20 C 0.55 6.46 3.32 36.01 0.12 6.58 16 21 F -0.16 -2.23 16.85 2.25 0.04 -2.19 16 22 F -0.17 -1.81 17.24 2.25 0.04 -1.77 16 23 F -0.17 -1.93 17.24 2.25 0.04 -1.89 16 24 C -0.04 -0.43 9.74 -39.33 -0.38 -0.81 16 25 C -0.19 -2.03 10.13 -39.06 -0.40 -2.43 16 26 C 0.48 7.11 7.13 -15.20 -0.11 7.01 16 27 O -0.51 -8.68 16.23 4.86 0.08 -8.60 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.77 6.65 -51.93 -0.35 0.42 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.98 6.28 -51.93 -0.33 0.65 16 36 H 0.08 1.57 6.09 -51.93 -0.32 1.25 16 37 H 0.08 1.75 6.82 -51.93 -0.35 1.40 16 38 H 0.05 0.94 6.15 -51.93 -0.32 0.62 16 39 H 0.01 0.16 5.92 -51.93 -0.31 -0.15 16 40 H 0.04 0.93 7.78 -51.93 -0.40 0.53 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.10 1.71 4.58 -51.93 -0.24 1.47 16 43 H 0.11 1.79 7.57 -51.93 -0.39 1.40 16 44 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 45 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 378.94 15.07 5.71 5.71 Total: -1.00 -29.31 378.94 -7.07 -36.38 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -5.89 Total: 0.55 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -1.77 Total: -0.90 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: -0.30 Total: -43.47 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.08 Total: -8.60 kcal Atomic # 9 Polarization: -5.96 SS G_CDS: 0.12 Total: -5.85 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.31 -7.07 -36.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178886991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.459 kcal (2) G-P(sol) polarization free energy of solvation -29.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds