Wall clock time and date at job start Wed Apr 1 2020 04:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47068 * 2 1 4 4 C 1.52999 * 109.47484 * 120.00146 * 2 1 3 5 5 C 1.52997 * 109.47088 * 64.99611 * 4 2 1 6 6 N 1.46902 * 109.47055 * 176.37801 * 5 4 2 7 7 C 1.46894 * 111.00198 * 299.91314 * 6 5 4 8 8 C 1.50697 * 109.47351 * 293.67063 * 7 6 5 9 9 H 1.08006 * 119.99960 * 2.99490 * 8 7 6 10 10 C 1.37871 * 120.00241 * 182.99233 * 8 7 6 11 11 N 1.31510 * 120.00301 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00236 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47235 * 89.99645 * 12 10 8 14 14 H 1.48493 * 109.47291 * 210.00138 * 12 10 8 15 15 H 1.48506 * 109.46950 * 330.00206 * 12 10 8 16 16 C 1.46903 * 111.00056 * 63.86908 * 6 5 4 17 17 N 1.46497 * 109.47043 * 85.01328 * 16 6 5 18 18 N 1.28389 * 119.17253 * 75.00436 * 17 16 6 19 19 C 1.30404 * 122.45303 * 180.02562 * 18 17 16 20 20 C 1.50701 * 119.76480 * 179.97438 * 19 18 17 21 21 F 1.39902 * 109.47355 * 0.02562 * 20 19 18 22 22 F 1.39902 * 109.46900 * 120.02221 * 20 19 18 23 23 F 1.39898 * 109.47329 * 240.02090 * 20 19 18 24 24 C 1.40468 * 120.46676 * 359.97438 * 19 18 17 25 25 C 1.36597 * 118.31538 * 0.27811 * 24 19 18 26 26 C 1.34670 * 119.17232 * 255.02034 * 17 16 6 27 27 O 1.22066 * 120.35382 * 359.97438 * 26 17 16 28 28 H 1.08994 * 109.47491 * 59.99902 * 1 2 3 29 29 H 1.08998 * 109.47212 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46998 * 300.00003 * 1 2 3 31 31 H 1.09003 * 109.46998 * 239.99997 * 2 1 3 32 32 H 1.09005 * 109.47147 * 180.02562 * 3 2 1 33 33 H 1.09010 * 109.47261 * 300.00004 * 3 2 1 34 34 H 1.09000 * 109.47670 * 60.00358 * 3 2 1 35 35 H 1.09005 * 109.46903 * 305.00190 * 4 2 1 36 36 H 1.08994 * 109.47204 * 185.00069 * 4 2 1 37 37 H 1.08998 * 109.47097 * 56.38307 * 5 4 2 38 38 H 1.09002 * 109.47334 * 296.37949 * 5 4 2 39 39 H 1.08997 * 109.47005 * 53.67143 * 7 6 5 40 40 H 1.09002 * 109.47208 * 173.67082 * 7 6 5 41 41 H 0.97001 * 120.00717 * 179.97438 * 11 10 8 42 42 H 1.09004 * 109.46688 * 325.01898 * 16 6 5 43 43 H 1.08993 * 109.47293 * 205.01865 * 16 6 5 44 44 H 1.08004 * 120.84131 * 180.02562 * 24 19 18 45 45 H 1.08001 * 121.09960 * 179.72652 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1954 1.1879 6 7 2.1986 -2.9063 2.3435 7 6 3.6651 -2.8222 2.3497 8 6 4.2166 -3.5776 1.1681 9 1 3.5437 -4.0300 0.4545 10 6 5.5800 -3.6913 0.9979 11 7 6.3994 -3.1401 1.8664 12 14 6.2636 -4.6271 -0.4672 13 1 6.4493 -3.6943 -1.6076 14 1 7.5708 -5.2303 -0.1032 15 1 5.3140 -5.7008 -0.8556 16 6 1.6367 -2.3954 3.6010 17 7 0.3692 -3.0745 3.8810 18 7 0.3888 -4.2858 4.3062 19 6 -0.7002 -4.9508 4.5749 20 6 -0.6066 -6.3709 5.0705 21 9 0.7382 -6.7462 5.1593 22 9 -1.2012 -6.4642 6.3335 23 9 -1.2700 -7.2207 4.1789 24 6 -1.9600 -4.3528 4.4057 25 6 -2.0104 -3.0662 3.9495 26 6 -0.7873 -2.4127 3.6857 27 8 -0.7782 -1.2611 3.2808 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6055 -0.2618 2.1370 36 1 3.1264 -0.6443 1.2951 37 1 2.0160 -2.6388 0.2678 38 1 0.5484 -2.2749 1.2070 39 1 3.9694 -1.7774 2.2871 40 1 4.0502 -3.2582 3.2715 41 1 7.3587 -3.2204 1.7469 42 1 1.4624 -1.3231 3.5118 43 1 2.3371 -2.5831 4.4147 44 1 -2.8658 -4.8978 4.6269 45 1 -2.9548 -2.5644 3.7989 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178886991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:35 Heat of formation + Delta-G solvation = -133.266685 kcal Electronic energy + Delta-G solvation = -32152.961503 eV Core-core repulsion = 27370.646011 eV Total energy + Delta-G solvation = -4782.315492 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.19775 -48.70372 -48.67721 -43.33052 -39.60026 -39.03932 -36.81515 -35.73802 -34.47057 -32.88765 -30.16885 -29.99474 -28.12596 -28.01848 -26.61128 -25.27999 -24.78535 -24.48580 -21.92452 -20.97940 -20.29910 -19.72019 -19.60408 -18.77061 -18.40443 -18.00115 -17.89408 -17.11498 -16.80279 -16.55763 -16.07257 -15.65892 -15.52349 -15.48278 -15.20526 -15.09120 -14.86965 -14.80160 -14.76109 -14.68578 -14.52976 -14.37858 -14.24232 -13.96983 -13.58867 -13.27758 -13.14616 -13.09424 -12.81363 -12.71940 -12.61894 -12.49245 -12.12426 -12.01266 -11.83974 -11.76091 -11.54542 -11.35291 -11.27804 -10.96313 -10.60915 -9.90616 -9.20664 -8.21119 -6.29062 -0.62657 0.11986 0.70019 1.39818 1.41125 1.51603 1.56692 2.08361 2.39060 2.46937 2.75757 3.09028 3.16723 3.17792 3.30611 3.56828 3.69139 3.85880 3.87714 4.02855 4.07116 4.12807 4.24553 4.40469 4.44454 4.59502 4.68939 4.73350 4.75142 4.80906 4.83811 4.86547 4.99328 5.02511 5.13698 5.17005 5.24071 5.36829 5.46451 5.49994 5.61364 5.94905 6.12862 6.30128 6.42818 6.80392 6.84312 7.39063 8.89538 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.008467 B = 0.004302 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3306.163638 B = 6507.760529 C = 9032.915650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.090 4.090 3 C -0.140 4.140 4 C -0.138 4.138 5 C 0.077 3.923 6 N -0.548 5.548 7 C 0.214 3.786 8 C -0.517 4.517 9 H 0.056 0.944 10 C 0.011 3.989 11 N -0.928 5.928 12 Si 0.960 3.040 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.270 1.270 16 C 0.264 3.736 17 N -0.321 5.321 18 N -0.167 5.167 19 C -0.046 4.046 20 C 0.551 3.449 21 F -0.174 7.174 22 F -0.159 7.159 23 F -0.162 7.162 24 C -0.031 4.031 25 C -0.175 4.175 26 C 0.467 3.533 27 O -0.543 6.543 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.059 0.941 39 H -0.008 1.008 40 H 0.010 0.990 41 H 0.264 0.736 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.206 0.794 45 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.544 -0.412 5.001 20.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.109 4.109 3 C -0.198 4.198 4 C -0.177 4.177 5 C -0.051 4.051 6 N -0.272 5.272 7 C 0.089 3.911 8 C -0.555 4.555 9 H 0.074 0.926 10 C -0.188 4.188 11 N -0.569 5.569 12 Si 0.785 3.215 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.195 1.195 16 C 0.054 3.946 17 N -0.143 5.143 18 N 0.006 4.994 19 C -0.218 4.218 20 C 0.494 3.506 21 F -0.156 7.156 22 F -0.140 7.140 23 F -0.144 7.144 24 C -0.053 4.053 25 C -0.205 4.205 26 C 0.267 3.733 27 O -0.423 6.423 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.010 0.990 40 H 0.029 0.971 41 H 0.073 0.927 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.223 0.777 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -18.508 -0.257 4.755 19.110 hybrid contribution 0.553 0.214 -0.437 0.737 sum -17.954 -0.043 4.317 18.466 Atomic orbital electron populations 1.21723 0.94254 1.01151 1.01754 1.21001 0.96455 0.96475 0.96972 1.21781 1.00462 0.95318 1.02191 1.22108 1.00414 0.96391 0.98798 1.22006 0.97571 0.91791 0.93704 1.61809 1.09224 1.55152 1.01031 1.19430 0.79974 0.94911 0.96805 1.21284 0.91474 1.33647 1.09135 0.92565 1.25715 0.97247 0.96626 0.99210 1.70041 1.03445 1.45973 1.37393 0.85518 0.77660 0.78882 0.79393 1.19855 1.20762 1.19456 1.22500 0.82365 0.94656 0.95075 1.47187 1.10705 1.07214 1.49222 1.70570 1.30525 0.95941 1.02343 1.21823 0.91939 0.96486 1.11509 1.17123 0.74082 0.83842 0.75550 1.93263 1.33939 1.92391 1.95970 1.93257 1.83655 1.96498 1.40629 1.93256 1.80652 1.72313 1.68136 1.22277 0.97615 0.94633 0.90796 1.22952 0.98341 0.95764 1.03414 1.18843 0.85694 0.88319 0.80479 1.90988 1.86809 1.17286 1.47177 0.91481 0.93816 0.93126 0.91945 0.93643 0.91183 0.92709 0.92422 0.93158 0.91785 0.92227 0.99046 0.97144 0.92664 0.88042 0.88060 0.77699 0.77908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.55 8.95 71.98 0.64 -2.90 16 2 C -0.09 -2.72 2.92 -10.79 -0.03 -2.75 16 3 C -0.14 -3.72 9.19 71.98 0.66 -3.06 16 4 C -0.14 -4.99 4.10 30.59 0.13 -4.87 16 5 C 0.08 3.00 4.79 86.30 0.41 3.42 16 6 N -0.55 -23.29 4.80 -913.19 -4.38 -27.67 16 7 C 0.21 10.85 4.43 85.56 0.38 11.23 16 8 C -0.52 -28.53 8.58 25.60 0.22 -28.31 16 9 H 0.06 3.11 7.01 -2.91 -0.02 3.09 16 10 C 0.01 0.60 5.46 84.65 0.46 1.06 16 11 N -0.93 -54.28 13.29 21.44 0.28 -53.99 16 12 Si 0.96 44.04 29.54 68.60 2.03 46.06 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 15 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 16 C 0.26 9.61 5.51 170.81 0.94 10.56 16 17 N -0.32 -10.30 3.46 -481.96 -1.67 -11.97 16 18 N -0.17 -5.18 10.27 -47.22 -0.48 -5.67 16 19 C -0.05 -1.07 6.35 43.31 0.27 -0.79 16 20 C 0.55 11.94 3.32 71.24 0.24 12.17 16 21 F -0.17 -4.87 16.85 44.97 0.76 -4.11 16 22 F -0.16 -2.92 17.24 44.97 0.78 -2.14 16 23 F -0.16 -3.28 17.24 44.97 0.78 -2.51 16 24 C -0.03 -0.48 9.74 22.43 0.22 -0.26 16 25 C -0.18 -3.23 10.13 22.61 0.23 -3.00 16 26 C 0.47 13.39 7.13 84.98 0.61 13.99 16 27 O -0.54 -18.09 16.23 -5.53 -0.09 -18.18 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.04 1.24 6.65 -2.39 -0.02 1.22 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 2.06 6.28 -2.38 -0.01 2.04 16 36 H 0.05 2.10 6.09 -2.39 -0.01 2.09 16 37 H 0.06 2.74 6.82 -2.39 -0.02 2.73 16 38 H 0.06 2.22 6.15 -2.39 -0.01 2.21 16 39 H -0.01 -0.43 5.92 -2.39 -0.01 -0.44 16 40 H 0.01 0.58 7.78 -2.39 -0.02 0.56 16 41 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 42 H 0.10 3.63 4.58 -2.38 -0.01 3.62 16 43 H 0.10 3.69 7.57 -2.39 -0.02 3.67 16 44 H 0.21 1.16 8.06 -2.91 -0.02 1.13 16 45 H 0.20 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -65.82 378.94 4.40 -61.41 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 1.03 Total: 12.28 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 5.38 Total: 6.48 kcal Atomic # 7 Polarization: -93.05 SS G_CDS: -6.25 Total: -99.30 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.09 Total: -18.18 kcal Atomic # 9 Polarization: -11.07 SS G_CDS: 2.31 Total: -8.76 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -65.82 4.40 -61.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178886991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.855 kcal (2) G-P(sol) polarization free energy of solvation -65.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds