Wall clock time and date at job start Wed Apr 1 2020 05:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47372 * 2 1 4 4 C 1.50707 * 109.47010 * 119.99853 * 2 1 3 5 5 O 1.21284 * 119.99731 * 359.97438 * 4 2 1 6 6 N 1.34774 * 120.00067 * 180.02562 * 4 2 1 7 7 C 1.39924 * 119.99940 * 174.82309 * 6 4 2 8 8 C 1.38957 * 120.03496 * 326.39687 * 7 6 4 9 9 C 1.38145 * 120.08284 * 180.02562 * 8 7 6 10 10 C 1.38164 * 120.14467 * 359.97438 * 9 8 7 11 11 C 1.38955 * 120.06540 * 359.97438 * 10 9 8 12 12 N 1.39732 * 120.04158 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99810 * 146.68492 * 12 11 10 14 14 O 1.21373 * 120.00160 * 354.78133 * 13 12 11 15 15 C 1.49359 * 119.99747 * 174.78333 * 13 12 11 16 16 O 1.21363 * 119.99946 * 0.02562 * 15 13 12 17 17 N 1.34770 * 119.99957 * 179.97438 * 15 13 12 18 18 C 1.46498 * 119.99874 * 180.02562 * 17 15 13 19 19 C 1.53008 * 109.47120 * 180.02562 * 18 17 15 20 20 C 1.50702 * 109.47187 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99692 * 0.02562 * 20 19 18 22 22 C 1.37867 * 120.00038 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99997 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00154 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47014 * 59.99813 * 24 22 20 26 26 H 1.48502 * 109.47184 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46794 * 299.99774 * 24 22 20 28 28 C 1.38716 * 120.03163 * 146.64387 * 7 6 4 29 29 H 1.08994 * 109.47188 * 300.00248 * 1 2 3 30 30 H 1.08998 * 109.46774 * 60.00570 * 1 2 3 31 31 H 1.08996 * 109.47056 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47373 * 239.99281 * 2 1 3 33 33 H 1.09004 * 109.47459 * 59.99334 * 3 2 1 34 34 H 1.08999 * 109.47606 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.46594 * 299.99978 * 3 2 1 36 36 H 0.96999 * 119.99792 * 354.82503 * 6 4 2 37 37 H 1.08003 * 119.95340 * 359.97438 * 8 7 6 38 38 H 1.07997 * 119.92686 * 179.97438 * 9 8 7 39 39 H 1.07999 * 119.96985 * 180.02562 * 10 9 8 40 40 H 0.96998 * 119.99445 * 326.40811 * 12 11 10 41 41 H 0.96995 * 120.00049 * 0.02562 * 17 15 13 42 42 H 1.08999 * 109.47213 * 300.00357 * 18 17 15 43 43 H 1.08997 * 109.47334 * 60.00461 * 18 17 15 44 44 H 1.09000 * 109.46796 * 299.99801 * 19 18 17 45 45 H 1.08997 * 109.46812 * 59.99931 * 19 18 17 46 46 H 0.97006 * 120.00156 * 180.02562 * 23 22 20 47 47 H 1.08000 * 120.07349 * 0.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.2442 -1.1709 2.0291 6 7 3.3574 -0.8331 1.4441 7 6 3.8246 -1.3956 2.6371 8 6 3.1232 -1.1986 3.8204 9 6 3.5839 -1.7531 4.9989 10 6 4.7427 -2.5054 5.0053 11 6 5.4483 -2.7071 3.8253 12 7 6.6199 -3.4686 3.8323 13 6 6.9409 -4.2211 2.7612 14 8 6.1678 -4.3124 1.8301 15 6 8.2479 -4.9427 2.7202 16 8 9.0207 -4.8517 3.6516 17 7 8.5687 -5.6956 1.6495 18 6 9.8505 -6.4038 1.6095 19 6 9.9648 -7.1778 0.2946 20 6 11.2836 -7.9058 0.2533 21 1 11.9713 -7.8249 1.0821 22 6 11.6118 -8.6760 -0.8421 23 7 10.7742 -8.7749 -1.8512 24 14 13.2463 -9.5790 -0.8932 25 1 13.3242 -10.5263 0.2477 26 1 13.3573 -10.3301 -2.1694 27 1 14.3570 -8.5978 -0.7987 28 6 4.9912 -2.1461 2.6406 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5140 -0.8899 33 1 1.6767 1.9564 0.8899 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9562 -0.8900 36 1 3.9871 -0.5315 0.7708 37 1 2.2173 -0.6107 3.8188 38 1 3.0370 -1.5981 5.9172 39 1 5.1001 -2.9379 5.9281 40 1 7.2042 -3.4523 4.6064 41 1 7.9509 -5.7685 0.9053 42 1 10.6658 -5.6837 1.6789 43 1 9.9077 -7.0991 2.4469 44 1 9.1495 -7.8979 0.2249 45 1 9.9078 -6.4821 -0.5425 46 1 11.0049 -9.3170 -2.6218 47 1 5.5405 -2.2969 1.7231 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273107182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:19 Heat of formation + Delta-G solvation = -89.762499 kcal Electronic energy + Delta-G solvation = -28898.560681 eV Core-core repulsion = 24659.988413 eV Total energy + Delta-G solvation = -4238.572269 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.27365 -40.66330 -39.18352 -38.09960 -35.89350 -35.14648 -35.00254 -34.21784 -32.90312 -30.50240 -29.90597 -29.53609 -27.58047 -25.93005 -24.67286 -24.26079 -22.78582 -22.01845 -21.11526 -20.49167 -19.94981 -18.89914 -17.89128 -17.68829 -16.85229 -16.57656 -16.27939 -16.02262 -15.83869 -15.60962 -15.06709 -14.84541 -14.67015 -14.50293 -14.39612 -14.06258 -13.84120 -13.55887 -13.26001 -13.16010 -12.89213 -12.81560 -12.44220 -12.35660 -12.26901 -12.06727 -11.66961 -11.58387 -11.54270 -11.29705 -11.08544 -10.95190 -10.71911 -10.44741 -10.40944 -10.03579 -9.86466 -9.53099 -9.29077 -8.79785 -8.68244 -8.45925 -8.25253 -6.13591 -4.17668 0.84861 1.02840 1.59209 2.23511 2.30405 2.66948 3.22709 3.28210 3.32597 3.35070 3.59708 3.70991 4.10402 4.36276 4.36424 4.44656 4.57739 4.66990 4.84318 4.88526 4.99151 5.11464 5.16852 5.19561 5.23138 5.23266 5.34501 5.36763 5.46323 5.63467 5.80990 5.91707 5.94956 6.05233 6.10911 6.14311 6.17081 6.26203 6.49042 6.61317 6.73171 6.89768 7.00275 7.38243 7.52314 7.53115 7.73114 7.75700 7.82878 8.11474 8.24703 8.87588 9.47466 10.97770 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014339 B = 0.001807 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.297435 B =15495.040541 C =17058.767182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 C -0.146 4.146 4 C 0.517 3.483 5 O -0.517 6.517 6 N -0.672 5.672 7 C 0.165 3.835 8 C -0.135 4.135 9 C -0.081 4.081 10 C -0.156 4.156 11 C 0.166 3.834 12 N -0.649 5.649 13 C 0.508 3.492 14 O -0.498 6.498 15 C 0.500 3.500 16 O -0.529 6.529 17 N -0.683 5.683 18 C 0.118 3.882 19 C 0.011 3.989 20 C -0.525 4.525 21 H 0.060 0.940 22 C 0.060 3.940 23 N -0.892 5.892 24 Si 0.899 3.101 25 H -0.275 1.275 26 H -0.287 1.287 27 H -0.275 1.275 28 C -0.148 4.148 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.412 0.588 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.424 0.576 41 H 0.411 0.589 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.025 0.975 45 H 0.025 0.975 46 H 0.264 0.736 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.444 21.770 7.824 29.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.136 4.136 3 C -0.203 4.203 4 C 0.305 3.695 5 O -0.391 6.391 6 N -0.317 5.317 7 C 0.070 3.930 8 C -0.156 4.156 9 C -0.100 4.100 10 C -0.177 4.177 11 C 0.072 3.928 12 N -0.296 5.296 13 C 0.291 3.709 14 O -0.371 6.371 15 C 0.279 3.721 16 O -0.407 6.407 17 N -0.333 5.333 18 C -0.003 4.003 19 C -0.026 4.026 20 C -0.564 4.564 21 H 0.078 0.922 22 C -0.143 4.143 23 N -0.530 5.530 24 Si 0.726 3.274 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.201 1.201 28 C -0.170 4.170 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.248 0.752 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.263 0.737 41 H 0.247 0.753 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.044 0.956 45 H 0.043 0.957 46 H 0.073 0.927 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.996 21.324 8.111 29.687 hybrid contribution 1.262 -0.552 -0.502 1.466 sum -17.734 20.771 7.609 28.352 Atomic orbital electron populations 1.21629 0.92043 1.03135 1.02327 1.21337 0.98738 0.97293 0.96195 1.21813 1.01323 0.93913 1.03271 1.20939 0.81465 0.78981 0.88117 1.90724 1.54987 1.46478 1.46932 1.43567 1.08023 1.61397 1.18702 1.17468 0.94422 0.95300 0.85796 1.21097 1.01286 1.02488 0.90717 1.20804 0.95013 0.96295 0.97873 1.20921 0.96284 1.03221 0.97227 1.17388 0.87743 0.93389 0.94315 1.43192 1.22770 1.43715 1.19903 1.20681 0.87917 0.79660 0.82680 1.90784 1.50196 1.60609 1.35479 1.19732 0.86470 0.81548 0.84387 1.90755 1.51040 1.62885 1.36023 1.46241 1.22143 1.45775 1.19186 1.21983 0.81309 0.94923 1.02126 1.19359 0.98265 0.95049 0.89964 1.20962 1.02316 1.29359 1.03715 0.92183 1.25001 0.97329 0.96472 0.95457 1.69948 1.35922 1.39917 1.07251 0.86545 0.83663 0.79815 0.77343 1.20078 1.21215 1.20095 1.20815 0.98773 0.98573 0.98878 0.91833 0.91735 0.91745 0.88017 0.91900 0.92013 0.90989 0.75217 0.84809 0.85094 0.85211 0.73733 0.75316 0.91698 0.91690 0.95627 0.95651 0.92681 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.83 8.48 37.16 0.32 -0.52 16 2 C -0.11 -0.67 3.25 -91.77 -0.30 -0.97 16 3 C -0.15 -0.59 9.10 37.16 0.34 -0.25 16 4 C 0.52 4.80 6.89 -10.98 -0.08 4.73 16 5 O -0.52 -6.64 13.68 5.55 0.08 -6.56 16 6 N -0.67 -5.76 5.19 -9.88 -0.05 -5.81 16 7 C 0.16 1.78 6.27 -83.72 -0.52 1.26 16 8 C -0.14 -1.43 8.65 -39.35 -0.34 -1.77 16 9 C -0.08 -0.74 10.03 -39.64 -0.40 -1.14 16 10 C -0.16 -1.48 9.96 -39.34 -0.39 -1.87 16 11 C 0.17 1.90 6.27 -83.77 -0.53 1.37 16 12 N -0.65 -7.56 5.32 -10.31 -0.05 -7.61 16 13 C 0.51 7.31 7.62 -11.63 -0.09 7.22 16 14 O -0.50 -7.98 14.18 5.48 0.08 -7.90 16 15 C 0.50 8.17 7.89 -11.63 -0.09 8.07 16 16 O -0.53 -9.52 16.48 5.49 0.09 -9.43 16 17 N -0.68 -11.87 5.55 -60.76 -0.34 -12.21 16 18 C 0.12 2.38 5.61 -4.04 -0.02 2.36 16 19 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 20 C -0.52 -14.19 9.11 -34.44 -0.31 -14.50 16 21 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 22 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 23 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 24 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 C -0.15 -1.74 8.56 -39.19 -0.34 -2.07 16 29 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 32 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.20 7.69 -51.93 -0.40 -0.20 16 35 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.41 2.38 8.40 -40.82 -0.34 2.04 16 37 H 0.13 1.45 6.43 -52.48 -0.34 1.11 16 38 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.42 4.17 8.29 -40.82 -0.34 3.83 16 41 H 0.41 6.79 7.94 -40.82 -0.32 6.46 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.14 1.71 6.43 -52.49 -0.34 1.38 16 LS Contribution 401.47 15.07 6.05 6.05 Total: -1.00 -33.38 401.47 -8.12 -41.50 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.69 Total: 7.41 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -2.99 Total: 3.60 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.29 Total: -50.67 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.24 Total: -23.89 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.38 -8.12 -41.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273107182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.264 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds