Wall clock time and date at job start Wed Apr 1 2020 05:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47372 * 2 1 4 4 C 1.50707 * 109.47010 * 119.99853 * 2 1 3 5 5 O 1.21284 * 119.99731 * 359.97438 * 4 2 1 6 6 N 1.34774 * 120.00067 * 180.02562 * 4 2 1 7 7 C 1.39924 * 119.99940 * 174.82309 * 6 4 2 8 8 C 1.38957 * 120.03496 * 326.39687 * 7 6 4 9 9 C 1.38145 * 120.08284 * 180.02562 * 8 7 6 10 10 C 1.38164 * 120.14467 * 359.97438 * 9 8 7 11 11 C 1.38955 * 120.06540 * 359.97438 * 10 9 8 12 12 N 1.39732 * 120.04158 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99810 * 146.68492 * 12 11 10 14 14 O 1.21373 * 120.00160 * 354.78133 * 13 12 11 15 15 C 1.49359 * 119.99747 * 174.78333 * 13 12 11 16 16 O 1.21363 * 119.99946 * 0.02562 * 15 13 12 17 17 N 1.34770 * 119.99957 * 179.97438 * 15 13 12 18 18 C 1.46498 * 119.99874 * 180.02562 * 17 15 13 19 19 C 1.53008 * 109.47120 * 180.02562 * 18 17 15 20 20 C 1.50702 * 109.47187 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99692 * 0.02562 * 20 19 18 22 22 C 1.37867 * 120.00038 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99997 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00154 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47014 * 59.99813 * 24 22 20 26 26 H 1.48502 * 109.47184 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46794 * 299.99774 * 24 22 20 28 28 C 1.38716 * 120.03163 * 146.64387 * 7 6 4 29 29 H 1.08994 * 109.47188 * 300.00248 * 1 2 3 30 30 H 1.08998 * 109.46774 * 60.00570 * 1 2 3 31 31 H 1.08996 * 109.47056 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47373 * 239.99281 * 2 1 3 33 33 H 1.09004 * 109.47459 * 59.99334 * 3 2 1 34 34 H 1.08999 * 109.47606 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.46594 * 299.99978 * 3 2 1 36 36 H 0.96999 * 119.99792 * 354.82503 * 6 4 2 37 37 H 1.08003 * 119.95340 * 359.97438 * 8 7 6 38 38 H 1.07997 * 119.92686 * 179.97438 * 9 8 7 39 39 H 1.07999 * 119.96985 * 180.02562 * 10 9 8 40 40 H 0.96998 * 119.99445 * 326.40811 * 12 11 10 41 41 H 0.96995 * 120.00049 * 0.02562 * 17 15 13 42 42 H 1.08999 * 109.47213 * 300.00357 * 18 17 15 43 43 H 1.08997 * 109.47334 * 60.00461 * 18 17 15 44 44 H 1.09000 * 109.46796 * 299.99801 * 19 18 17 45 45 H 1.08997 * 109.46812 * 59.99931 * 19 18 17 46 46 H 0.97006 * 120.00156 * 180.02562 * 23 22 20 47 47 H 1.08000 * 120.07349 * 0.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.2442 -1.1709 2.0291 6 7 3.3574 -0.8331 1.4441 7 6 3.8246 -1.3956 2.6371 8 6 3.1232 -1.1986 3.8204 9 6 3.5839 -1.7531 4.9989 10 6 4.7427 -2.5054 5.0053 11 6 5.4483 -2.7071 3.8253 12 7 6.6199 -3.4686 3.8323 13 6 6.9409 -4.2211 2.7612 14 8 6.1678 -4.3124 1.8301 15 6 8.2479 -4.9427 2.7202 16 8 9.0207 -4.8517 3.6516 17 7 8.5687 -5.6956 1.6495 18 6 9.8505 -6.4038 1.6095 19 6 9.9648 -7.1778 0.2946 20 6 11.2836 -7.9058 0.2533 21 1 11.9713 -7.8249 1.0821 22 6 11.6118 -8.6760 -0.8421 23 7 10.7742 -8.7749 -1.8512 24 14 13.2463 -9.5790 -0.8932 25 1 13.3242 -10.5263 0.2477 26 1 13.3573 -10.3301 -2.1694 27 1 14.3570 -8.5978 -0.7987 28 6 4.9912 -2.1461 2.6406 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5140 -0.8899 33 1 1.6767 1.9564 0.8899 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9562 -0.8900 36 1 3.9871 -0.5315 0.7708 37 1 2.2173 -0.6107 3.8188 38 1 3.0370 -1.5981 5.9172 39 1 5.1001 -2.9379 5.9281 40 1 7.2042 -3.4523 4.6064 41 1 7.9509 -5.7685 0.9053 42 1 10.6658 -5.6837 1.6789 43 1 9.9077 -7.0991 2.4469 44 1 9.1495 -7.8979 0.2249 45 1 9.9078 -6.4821 -0.5425 46 1 11.0049 -9.3170 -2.6218 47 1 5.5405 -2.2969 1.7231 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273107182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:18 Heat of formation + Delta-G solvation = -113.055740 kcal Electronic energy + Delta-G solvation = -28899.570752 eV Core-core repulsion = 24659.988413 eV Total energy + Delta-G solvation = -4239.582339 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.27659 -41.57831 -40.29414 -39.16572 -37.07356 -36.43109 -35.64232 -35.13870 -34.76361 -31.75883 -31.27781 -30.42005 -27.99137 -27.52589 -25.74104 -25.31766 -23.82249 -22.94854 -22.66552 -21.60487 -20.77102 -20.00611 -18.89033 -18.60736 -18.36224 -17.73972 -17.39934 -17.16110 -16.71528 -16.59861 -16.48387 -16.27189 -15.99309 -15.39254 -15.36789 -15.03288 -14.84341 -14.63119 -14.46190 -14.30420 -13.90513 -13.70670 -13.31432 -13.26805 -13.13732 -12.93536 -12.89938 -12.88027 -12.68124 -12.54947 -12.28285 -12.10155 -12.00545 -11.88295 -11.68452 -11.45687 -11.21351 -10.82725 -10.75024 -10.61575 -10.25228 -9.53856 -9.08001 -8.23691 -6.34916 -0.15139 0.21524 0.52338 1.14365 1.43580 1.45504 1.51602 1.53557 1.93566 2.02889 2.38627 2.56963 2.77052 3.11390 3.28555 3.53315 3.88020 3.95225 4.01508 4.12620 4.15504 4.34228 4.36605 4.39104 4.44445 4.46089 4.57949 4.75312 4.80465 4.86489 4.91488 5.02015 5.04418 5.09755 5.13622 5.24435 5.29005 5.30071 5.35527 5.41437 5.47145 5.54185 5.73731 5.82629 5.96302 6.11969 6.26178 6.33881 6.58931 6.76987 6.82868 7.03998 7.34711 8.87997 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014339 B = 0.001807 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.297435 B =15495.040541 C =17058.767182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.109 4.109 3 C -0.142 4.142 4 C 0.512 3.488 5 O -0.558 6.558 6 N -0.665 5.665 7 C 0.155 3.845 8 C -0.144 4.144 9 C -0.077 4.077 10 C -0.148 4.148 11 C 0.147 3.853 12 N -0.630 5.630 13 C 0.516 3.484 14 O -0.517 6.517 15 C 0.506 3.494 16 O -0.543 6.543 17 N -0.685 5.685 18 C 0.137 3.863 19 C 0.018 3.982 20 C -0.545 4.545 21 H 0.066 0.934 22 C 0.005 3.995 23 N -0.928 5.928 24 Si 0.967 3.033 25 H -0.267 1.267 26 H -0.284 1.284 27 H -0.267 1.267 28 C -0.160 4.160 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.119 0.881 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.424 0.576 37 H 0.129 0.871 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.434 0.566 41 H 0.415 0.585 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.007 0.993 45 H 0.009 0.991 46 H 0.265 0.735 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.139 22.701 8.693 30.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.130 4.130 3 C -0.199 4.199 4 C 0.302 3.698 5 O -0.435 6.435 6 N -0.311 5.311 7 C 0.059 3.941 8 C -0.165 4.165 9 C -0.096 4.096 10 C -0.168 4.168 11 C 0.053 3.947 12 N -0.278 5.278 13 C 0.298 3.702 14 O -0.392 6.392 15 C 0.286 3.714 16 O -0.421 6.421 17 N -0.336 5.336 18 C 0.015 3.985 19 C -0.020 4.020 20 C -0.584 4.584 21 H 0.084 0.916 22 C -0.194 4.194 23 N -0.567 5.567 24 Si 0.792 3.208 25 H -0.192 1.192 26 H -0.209 1.209 27 H -0.191 1.191 28 C -0.183 4.183 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.137 0.863 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.262 0.738 37 H 0.147 0.853 38 H 0.177 0.823 39 H 0.174 0.826 40 H 0.274 0.726 41 H 0.252 0.748 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.025 0.975 45 H 0.027 0.973 46 H 0.074 0.926 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.682 22.298 9.001 30.450 hybrid contribution 1.084 -0.770 -0.719 1.511 sum -17.598 21.528 8.282 29.013 Atomic orbital electron populations 1.21635 0.92371 1.02160 1.02903 1.21403 0.98399 0.98260 0.94911 1.21817 1.01945 0.92407 1.03763 1.21635 0.81179 0.78339 0.88642 1.90699 1.55926 1.48321 1.48568 1.43584 1.08264 1.60773 1.18452 1.17608 0.94263 0.95443 0.86744 1.21241 1.01129 1.02741 0.91351 1.21152 0.94824 0.95151 0.98435 1.21198 0.95777 1.02436 0.97424 1.17603 0.87980 0.94041 0.95117 1.43027 1.22974 1.42609 1.19193 1.20169 0.86838 0.79929 0.83265 1.90789 1.50440 1.61567 1.36409 1.19971 0.87044 0.80888 0.83492 1.90746 1.51746 1.63251 1.36374 1.46054 1.21395 1.46161 1.20007 1.21521 0.82678 0.94640 0.99674 1.19182 0.96767 0.94498 0.91507 1.21422 1.03424 1.29561 1.03946 0.91606 1.25914 1.01031 0.97380 0.95092 1.70069 1.37916 1.40844 1.07913 0.85466 0.79235 0.78654 0.77496 1.19223 1.20949 1.19146 1.20807 0.99231 0.99420 0.98801 0.92925 0.89441 0.93496 0.86277 0.92639 0.91045 0.89248 0.73759 0.85344 0.82275 0.82565 0.72587 0.74835 0.91698 0.91819 0.97452 0.97308 0.92586 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 8.48 71.98 0.61 -0.97 16 2 C -0.11 -1.16 3.25 -11.54 -0.04 -1.20 16 3 C -0.14 -0.91 9.10 71.98 0.65 -0.25 16 4 C 0.51 9.47 6.89 87.66 0.60 10.07 16 5 O -0.56 -14.66 13.68 -3.04 -0.04 -14.70 16 6 N -0.66 -11.22 5.19 -303.56 -1.58 -12.79 16 7 C 0.15 3.30 6.27 38.14 0.24 3.54 16 8 C -0.14 -2.95 8.65 22.42 0.19 -2.75 16 9 C -0.08 -1.25 10.03 22.23 0.22 -1.03 16 10 C -0.15 -2.47 9.96 22.42 0.22 -2.25 16 11 C 0.15 3.17 6.27 38.19 0.24 3.41 16 12 N -0.63 -13.90 5.32 -304.89 -1.62 -15.52 16 13 C 0.52 14.52 7.62 87.24 0.66 15.18 16 14 O -0.52 -16.53 14.18 -3.32 -0.05 -16.58 16 15 C 0.51 16.23 7.89 87.24 0.69 16.92 16 16 O -0.54 -18.95 16.48 -3.29 -0.05 -19.01 16 17 N -0.69 -23.82 5.55 -464.50 -2.58 -26.40 16 18 C 0.14 5.55 5.61 86.38 0.48 6.03 16 19 C 0.02 0.89 5.09 29.85 0.15 1.04 16 20 C -0.55 -29.57 9.11 25.60 0.23 -29.34 16 21 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 22 C 0.00 0.25 5.46 84.65 0.46 0.72 16 23 N -0.93 -54.25 13.29 21.44 0.28 -53.97 16 24 Si 0.97 42.82 29.54 68.60 2.03 44.85 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 27 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 28 C -0.16 -3.71 8.56 22.52 0.19 -3.51 16 29 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 30 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.72 8.10 -2.39 -0.02 0.70 16 32 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.07 0.33 7.69 -2.39 -0.02 0.31 16 35 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.42 4.67 8.40 -92.71 -0.78 3.89 16 37 H 0.13 2.78 6.43 -2.91 -0.02 2.76 16 38 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 39 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 40 H 0.43 7.77 8.29 -92.71 -0.77 7.00 16 41 H 0.42 13.89 7.94 -92.71 -0.74 13.15 16 42 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 43 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 44 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.27 14.65 8.31 -92.70 -0.77 13.88 16 47 H 0.13 3.20 6.43 -2.91 -0.02 3.19 16 Total: -1.00 -72.03 401.47 0.97 -71.06 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -1.25 Total: 27.47 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 5.83 Total: 15.59 kcal Atomic # 7 Polarization: -103.19 SS G_CDS: -5.49 Total: -108.68 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -0.14 Total: -50.28 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -72.03 0.97 -71.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273107182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.996 kcal (2) G-P(sol) polarization free energy of solvation -72.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds