Wall clock time and date at job start Wed Apr 1 2020 04:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47144 * 2 1 4 4 C 1.53002 * 109.47070 * 119.99743 * 2 1 3 5 5 H 1.08998 * 109.47366 * 300.17590 * 4 2 1 6 6 N 1.46502 * 109.46842 * 60.17380 * 4 2 1 7 7 C 1.34769 * 120.00082 * 274.99767 * 6 4 2 8 8 O 1.21520 * 119.99959 * 359.97438 * 7 6 4 9 9 C 1.48169 * 120.00097 * 180.02562 * 7 6 4 10 10 C 1.39315 * 119.72157 * 180.02562 * 9 7 6 11 11 C 1.38591 * 119.05570 * 179.97438 * 10 9 7 12 12 C 1.38626 * 118.49054 * 0.02562 * 11 10 9 13 13 C 1.38561 * 119.35232 * 359.97438 * 12 11 10 14 14 N 1.31527 * 120.90006 * 359.74663 * 13 12 11 15 15 C 1.50700 * 109.47247 * 180.17220 * 4 2 1 16 16 O 1.21279 * 120.00071 * 270.91049 * 15 4 2 17 17 N 1.34781 * 120.00207 * 90.90786 * 15 4 2 18 18 C 1.47575 * 134.49419 * 175.07009 * 17 15 4 19 19 C 1.53953 * 86.11629 * 204.65653 * 18 17 15 20 20 O 1.42908 * 113.74021 * 90.73471 * 19 18 17 21 21 C 1.50693 * 113.74293 * 221.93783 * 19 18 17 22 22 H 1.07999 * 120.00315 * 358.07486 * 21 19 18 23 23 C 1.37876 * 119.99757 * 178.07515 * 21 19 18 24 24 N 1.31516 * 120.00399 * 359.97438 * 23 21 19 25 25 Si 1.86803 * 119.99778 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47182 * 90.00143 * 25 23 21 27 27 H 1.48500 * 109.47029 * 209.99989 * 25 23 21 28 28 H 1.48496 * 109.47113 * 329.99830 * 25 23 21 29 29 C 1.47933 * 134.49612 * 355.09780 * 17 15 4 30 30 H 1.09000 * 109.46918 * 300.00160 * 1 2 3 31 31 H 1.08999 * 109.47141 * 60.00009 * 1 2 3 32 32 H 1.08993 * 109.47222 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47410 * 240.00024 * 2 1 3 34 34 H 1.09001 * 109.46645 * 185.72952 * 3 2 1 35 35 H 1.08994 * 109.47093 * 305.72816 * 3 2 1 36 36 H 1.09000 * 109.47477 * 65.73106 * 3 2 1 37 37 H 0.97005 * 119.99638 * 95.00020 * 6 4 2 38 38 H 1.07999 * 120.47085 * 359.95290 * 10 9 7 39 39 H 1.07997 * 120.75328 * 180.02562 * 11 10 9 40 40 H 1.07994 * 120.32404 * 180.02562 * 12 11 10 41 41 H 1.07994 * 119.55083 * 180.02562 * 13 12 11 42 42 H 1.08992 * 113.77142 * 90.36058 * 18 17 15 43 43 H 1.09000 * 113.87004 * 318.96700 * 18 17 15 44 44 H 0.96692 * 113.99811 * 181.92315 * 20 19 18 45 45 H 0.97003 * 120.00170 * 180.02562 * 24 23 21 46 46 H 1.08994 * 113.87181 * 41.07750 * 29 17 15 47 47 H 1.09002 * 113.76277 * 269.58172 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6741 -0.2092 2.1393 6 7 1.5550 -2.1036 1.2472 7 6 0.3331 -2.3899 1.7384 8 8 -0.3662 -1.5013 2.1835 9 6 -0.1572 -3.7881 1.7368 10 6 -1.4214 -4.0773 2.2456 11 6 -1.8664 -5.3898 2.2368 12 6 -1.0309 -6.3678 1.7198 13 6 0.2144 -6.0080 1.2303 14 7 0.6096 -4.7536 1.2458 15 6 3.5469 -0.7175 1.2515 16 8 4.1563 -1.6167 0.7119 17 7 4.2176 0.2850 1.8529 18 6 5.6420 0.5603 2.1236 19 6 5.1435 1.4357 3.2878 20 8 5.0214 0.7318 4.5255 21 6 5.8832 2.7414 3.4250 22 1 6.7014 2.9712 2.7586 23 6 5.5154 3.6427 4.4014 24 7 4.5187 3.3632 5.2126 25 14 6.4318 5.2616 4.5710 26 1 5.7784 6.2915 3.7237 27 1 6.4058 5.6988 5.9899 28 1 7.8396 5.0816 4.1343 29 6 3.8215 1.5512 2.5075 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1252 1.4442 -0.1026 35 1 1.5953 1.9851 -0.8342 36 1 1.7629 1.9260 0.9368 37 1 2.1135 -2.8130 0.8922 38 1 -2.0457 -3.2900 2.6415 39 1 -2.8418 -5.6449 2.6239 40 1 -1.3479 -7.4000 1.6981 41 1 0.8676 -6.7673 0.8265 42 1 6.1388 1.1223 1.3329 43 1 6.2074 -0.3151 2.4430 44 1 4.6807 1.2708 5.2524 45 1 4.2597 3.9975 5.8993 46 1 2.9331 1.4652 3.1330 47 1 3.7848 2.4035 1.8291 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356874962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:46 Heat of formation + Delta-G solvation = -47.584414 kcal Electronic energy + Delta-G solvation = -31250.779304 eV Core-core repulsion = 27014.036015 eV Total energy + Delta-G solvation = -4236.743290 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.92571 -40.02766 -38.94622 -37.50775 -35.72606 -34.04755 -33.55581 -32.59004 -32.22852 -31.60144 -29.21177 -27.19735 -26.90586 -25.26826 -25.22880 -24.25695 -23.66422 -20.98728 -20.65026 -19.87276 -18.92660 -17.93603 -17.30562 -17.06855 -16.42033 -16.28316 -15.78412 -15.72901 -15.35968 -15.09084 -14.83780 -14.72456 -14.18592 -14.12357 -13.92215 -13.51592 -13.35734 -12.98608 -12.78938 -12.59619 -12.48465 -12.27076 -12.16223 -12.02379 -11.89936 -11.57662 -11.37914 -11.15376 -11.04077 -10.85011 -10.73698 -10.53020 -10.32929 -10.28866 -10.27877 -9.73822 -9.65622 -9.49346 -9.30407 -8.92592 -8.76280 -8.43240 -7.89702 -6.39721 -4.50240 0.40016 0.91876 2.61742 2.79959 3.11847 3.14340 3.23042 3.26076 3.58253 3.67741 3.96507 4.18355 4.48983 4.56276 4.67505 4.72612 4.76124 4.86126 4.93694 5.07392 5.12920 5.35190 5.42165 5.52327 5.57057 5.67913 5.78201 5.79262 5.82024 5.93426 6.02357 6.03478 6.12276 6.16960 6.26345 6.30821 6.37070 6.43093 6.48437 6.51482 6.60039 6.67393 7.07601 7.35353 7.62260 7.66093 7.80693 8.16015 8.37594 8.52978 8.61865 9.20939 9.41193 10.66977 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017336 B = 0.002635 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.768931 B =10623.996080 C =10787.820430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 C -0.153 4.153 4 C 0.136 3.864 5 H 0.109 0.891 6 N -0.690 5.690 7 C 0.571 3.429 8 O -0.527 6.527 9 C 0.083 3.917 10 C -0.112 4.112 11 C -0.083 4.083 12 C -0.153 4.153 13 C 0.098 3.902 14 N -0.456 5.456 15 C 0.529 3.471 16 O -0.561 6.561 17 N -0.624 5.624 18 C 0.113 3.887 19 C 0.238 3.762 20 O -0.573 6.573 21 C -0.537 4.537 22 H 0.071 0.929 23 C 0.073 3.927 24 N -0.896 5.896 25 Si 0.907 3.093 26 H -0.277 1.277 27 H -0.284 1.284 28 H -0.271 1.271 29 C 0.078 3.922 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.419 0.581 38 H 0.150 0.850 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.163 0.837 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.392 0.608 45 H 0.273 0.727 46 H 0.070 0.930 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.474 -12.451 -7.418 19.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.115 4.115 3 C -0.210 4.210 4 C 0.028 3.972 5 H 0.126 0.874 6 N -0.342 5.342 7 C 0.356 3.644 8 O -0.403 6.403 9 C -0.055 4.055 10 C -0.133 4.133 11 C -0.109 4.109 12 C -0.173 4.173 13 C -0.061 4.061 14 N -0.168 5.168 15 C 0.317 3.683 16 O -0.441 6.441 17 N -0.357 5.357 18 C -0.008 4.008 19 C 0.197 3.803 20 O -0.384 6.384 21 C -0.576 4.576 22 H 0.090 0.910 23 C -0.130 4.130 24 N -0.536 5.536 25 Si 0.734 3.266 26 H -0.203 1.203 27 H -0.209 1.209 28 H -0.196 1.196 29 C -0.045 4.045 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.257 0.743 38 H 0.167 0.833 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.180 0.820 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.247 0.753 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.780 -12.580 -7.978 18.992 hybrid contribution -0.454 0.667 0.620 1.018 sum -12.235 -11.913 -7.358 18.594 Atomic orbital electron populations 1.21859 0.93717 1.01805 1.01880 1.21404 0.96997 0.96582 0.96550 1.21993 1.01596 0.94731 1.02709 1.20929 0.91639 0.83302 1.01294 0.87350 1.45591 1.17253 1.09732 1.61615 1.17785 0.81760 0.86754 0.78099 1.90806 1.56390 1.46515 1.46600 1.21172 0.92428 0.93431 0.98480 1.22160 0.95796 0.97948 0.97353 1.21641 1.00163 0.92333 0.96750 1.22395 0.95432 1.00996 0.98494 1.22844 0.94516 0.92689 0.96083 1.67601 1.34695 1.01184 1.13288 1.19948 0.88639 0.82059 0.77653 1.90636 1.69893 1.37597 1.46001 1.50256 1.10397 1.20368 1.54686 1.23480 0.82257 0.98476 0.96636 1.19852 0.89455 0.88966 0.82055 1.86062 1.88502 1.42751 1.21123 1.21474 1.17992 1.00706 1.17392 0.91048 1.25068 0.94354 0.98927 0.94676 1.69401 1.27322 1.37316 1.19573 0.86346 0.80223 0.82484 0.77555 1.20307 1.20931 1.19577 1.24498 1.02671 0.82827 0.94474 0.91424 0.93125 0.93091 0.90698 0.92019 0.92093 0.91557 0.74303 0.83253 0.84032 0.84217 0.81960 0.89513 0.91086 0.75316 0.91655 0.91182 0.89477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 7.72 37.16 0.29 -1.58 16 2 C -0.10 -1.42 2.68 -90.62 -0.24 -1.66 16 3 C -0.15 -2.18 7.50 37.16 0.28 -1.90 16 4 C 0.14 2.35 2.06 -69.08 -0.14 2.20 16 5 H 0.11 2.00 7.09 -51.93 -0.37 1.63 16 6 N -0.69 -11.21 4.94 -55.77 -0.28 -11.48 16 7 C 0.57 8.91 6.17 -12.18 -0.08 8.84 16 8 O -0.53 -9.02 13.45 5.35 0.07 -8.95 16 9 C 0.08 1.10 6.75 -83.01 -0.56 0.54 16 10 C -0.11 -1.18 9.63 -39.05 -0.38 -1.56 16 11 C -0.08 -0.63 10.17 -39.31 -0.40 -1.03 16 12 C -0.15 -1.06 10.11 -39.32 -0.40 -1.46 16 13 C 0.10 0.88 11.18 -17.56 -0.20 0.68 16 14 N -0.46 -5.71 9.54 -9.80 -0.09 -5.80 16 15 C 0.53 10.58 6.35 -10.98 -0.07 10.51 16 16 O -0.56 -12.41 16.85 5.56 0.09 -12.32 16 17 N -0.62 -12.80 3.06 -178.01 -0.55 -13.35 16 18 C 0.11 2.41 8.23 -2.97 -0.02 2.39 16 19 C 0.24 5.58 1.40 -90.84 -0.13 5.45 16 20 O -0.57 -14.54 13.49 -35.23 -0.48 -15.02 16 21 C -0.54 -13.17 8.61 -34.44 -0.30 -13.46 16 22 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 23 C 0.07 1.78 5.39 -17.82 -0.10 1.68 16 24 N -0.90 -22.38 11.20 55.43 0.62 -21.76 16 25 Si 0.91 19.23 29.54 -169.99 -5.02 14.21 16 26 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 27 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 29 C 0.08 1.61 5.84 -2.77 -0.02 1.60 16 30 H 0.07 1.00 7.54 -51.93 -0.39 0.61 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.73 5.77 -51.93 -0.30 0.43 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.96 6.46 -51.93 -0.34 0.62 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.97 7.17 -51.93 -0.37 0.60 16 37 H 0.42 6.90 7.19 -40.82 -0.29 6.61 16 38 H 0.15 1.50 7.64 -52.49 -0.40 1.10 16 39 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 40 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 41 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.09 1.69 8.09 -51.93 -0.42 1.27 16 43 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 44 H 0.39 10.07 6.60 45.56 0.30 10.38 16 45 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 46 H 0.07 1.49 7.88 -51.93 -0.41 1.08 16 47 H 0.09 1.72 7.26 -51.93 -0.38 1.34 16 LS Contribution 384.74 15.07 5.80 5.80 Total: -1.00 -29.34 384.74 -8.15 -37.50 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -5.87 Total: 19.94 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: -2.46 Total: 11.23 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.29 Total: -52.39 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.31 Total: -36.28 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.34 -8.15 -37.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356874962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.088 kcal (2) G-P(sol) polarization free energy of solvation -29.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds