Wall clock time and date at job start Wed Apr 1 2020 04:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47144 * 2 1 4 4 C 1.53002 * 109.47070 * 119.99743 * 2 1 3 5 5 H 1.08998 * 109.47366 * 300.17590 * 4 2 1 6 6 N 1.46502 * 109.46842 * 60.17380 * 4 2 1 7 7 C 1.34769 * 120.00082 * 274.99767 * 6 4 2 8 8 O 1.21520 * 119.99959 * 359.97438 * 7 6 4 9 9 C 1.48169 * 120.00097 * 180.02562 * 7 6 4 10 10 C 1.39315 * 119.72157 * 180.02562 * 9 7 6 11 11 C 1.38591 * 119.05570 * 179.97438 * 10 9 7 12 12 C 1.38626 * 118.49054 * 0.02562 * 11 10 9 13 13 C 1.38561 * 119.35232 * 359.97438 * 12 11 10 14 14 N 1.31527 * 120.90006 * 359.74663 * 13 12 11 15 15 C 1.50700 * 109.47247 * 180.17220 * 4 2 1 16 16 O 1.21279 * 120.00071 * 270.91049 * 15 4 2 17 17 N 1.34781 * 120.00207 * 90.90786 * 15 4 2 18 18 C 1.47575 * 134.49419 * 175.07009 * 17 15 4 19 19 C 1.53953 * 86.11629 * 204.65653 * 18 17 15 20 20 O 1.42908 * 113.74021 * 90.73471 * 19 18 17 21 21 C 1.50693 * 113.74293 * 221.93783 * 19 18 17 22 22 H 1.07999 * 120.00315 * 358.07486 * 21 19 18 23 23 C 1.37876 * 119.99757 * 178.07515 * 21 19 18 24 24 N 1.31516 * 120.00399 * 359.97438 * 23 21 19 25 25 Si 1.86803 * 119.99778 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47182 * 90.00143 * 25 23 21 27 27 H 1.48500 * 109.47029 * 209.99989 * 25 23 21 28 28 H 1.48496 * 109.47113 * 329.99830 * 25 23 21 29 29 C 1.47933 * 134.49612 * 355.09780 * 17 15 4 30 30 H 1.09000 * 109.46918 * 300.00160 * 1 2 3 31 31 H 1.08999 * 109.47141 * 60.00009 * 1 2 3 32 32 H 1.08993 * 109.47222 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47410 * 240.00024 * 2 1 3 34 34 H 1.09001 * 109.46645 * 185.72952 * 3 2 1 35 35 H 1.08994 * 109.47093 * 305.72816 * 3 2 1 36 36 H 1.09000 * 109.47477 * 65.73106 * 3 2 1 37 37 H 0.97005 * 119.99638 * 95.00020 * 6 4 2 38 38 H 1.07999 * 120.47085 * 359.95290 * 10 9 7 39 39 H 1.07997 * 120.75328 * 180.02562 * 11 10 9 40 40 H 1.07994 * 120.32404 * 180.02562 * 12 11 10 41 41 H 1.07994 * 119.55083 * 180.02562 * 13 12 11 42 42 H 1.08992 * 113.77142 * 90.36058 * 18 17 15 43 43 H 1.09000 * 113.87004 * 318.96700 * 18 17 15 44 44 H 0.96692 * 113.99811 * 181.92315 * 20 19 18 45 45 H 0.97003 * 120.00170 * 180.02562 * 24 23 21 46 46 H 1.08994 * 113.87181 * 41.07750 * 29 17 15 47 47 H 1.09002 * 113.76277 * 269.58172 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6741 -0.2092 2.1393 6 7 1.5550 -2.1036 1.2472 7 6 0.3331 -2.3899 1.7384 8 8 -0.3662 -1.5013 2.1835 9 6 -0.1572 -3.7881 1.7368 10 6 -1.4214 -4.0773 2.2456 11 6 -1.8664 -5.3898 2.2368 12 6 -1.0309 -6.3678 1.7198 13 6 0.2144 -6.0080 1.2303 14 7 0.6096 -4.7536 1.2458 15 6 3.5469 -0.7175 1.2515 16 8 4.1563 -1.6167 0.7119 17 7 4.2176 0.2850 1.8529 18 6 5.6420 0.5603 2.1236 19 6 5.1435 1.4357 3.2878 20 8 5.0214 0.7318 4.5255 21 6 5.8832 2.7414 3.4250 22 1 6.7014 2.9712 2.7586 23 6 5.5154 3.6427 4.4014 24 7 4.5187 3.3632 5.2126 25 14 6.4318 5.2616 4.5710 26 1 5.7784 6.2915 3.7237 27 1 6.4058 5.6988 5.9899 28 1 7.8396 5.0816 4.1343 29 6 3.8215 1.5512 2.5075 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1252 1.4442 -0.1026 35 1 1.5953 1.9851 -0.8342 36 1 1.7629 1.9260 0.9368 37 1 2.1135 -2.8130 0.8922 38 1 -2.0457 -3.2900 2.6415 39 1 -2.8418 -5.6449 2.6239 40 1 -1.3479 -7.4000 1.6981 41 1 0.8676 -6.7673 0.8265 42 1 6.1388 1.1223 1.3329 43 1 6.2074 -0.3151 2.4430 44 1 4.6807 1.2708 5.2524 45 1 4.2597 3.9975 5.8993 46 1 2.9331 1.4652 3.1330 47 1 3.7848 2.4035 1.8291 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356874962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:45 Heat of formation + Delta-G solvation = -68.714542 kcal Electronic energy + Delta-G solvation = -31251.695575 eV Core-core repulsion = 27014.036015 eV Total energy + Delta-G solvation = -4237.659561 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.07562 -41.30808 -40.22700 -39.12695 -37.08606 -35.87327 -34.71137 -34.14852 -33.41818 -32.38981 -30.86786 -28.67279 -28.10001 -26.97990 -26.83677 -25.24534 -24.39502 -22.29543 -21.99440 -21.32110 -20.32754 -19.52268 -18.92892 -18.20046 -17.67933 -17.45011 -17.08394 -17.04971 -16.61867 -16.57264 -16.18065 -15.93100 -15.85599 -15.18632 -15.06345 -14.82404 -14.55072 -14.36411 -14.13163 -14.08621 -13.78441 -13.68301 -13.63850 -13.40341 -13.07001 -12.91317 -12.90561 -12.74860 -12.60531 -12.27072 -12.24576 -12.06356 -11.94509 -11.44741 -11.36025 -11.01717 -10.97465 -10.66338 -10.56372 -10.37026 -10.25496 -10.11585 -9.63837 -8.25779 -6.42828 -0.39693 0.25072 1.31027 1.47095 1.50884 1.58963 1.60414 1.64637 2.16051 2.41449 2.84390 2.96293 3.06223 3.20164 3.65295 3.71932 3.78820 3.79583 3.95938 4.03409 4.09290 4.12762 4.14481 4.21898 4.42552 4.49609 4.53546 4.58633 4.70997 4.74012 4.75787 4.83042 4.86462 4.87187 4.91702 5.01502 5.05719 5.10343 5.15371 5.21499 5.29274 5.36652 5.62879 5.73134 5.92608 6.24156 6.63113 6.69206 6.74534 6.94263 7.01117 7.30409 7.42548 8.80203 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017336 B = 0.002635 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.768931 B =10623.996080 C =10787.820430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.090 4.090 3 C -0.148 4.148 4 C 0.144 3.856 5 H 0.092 0.908 6 N -0.694 5.694 7 C 0.569 3.431 8 O -0.551 6.551 9 C 0.048 3.952 10 C -0.118 4.118 11 C -0.078 4.078 12 C -0.132 4.132 13 C 0.086 3.914 14 N -0.487 5.487 15 C 0.528 3.472 16 O -0.583 6.583 17 N -0.624 5.624 18 C 0.114 3.886 19 C 0.218 3.782 20 O -0.587 6.587 21 C -0.553 4.553 22 H 0.074 0.926 23 C 0.033 3.967 24 N -0.916 5.916 25 Si 0.968 3.032 26 H -0.271 1.271 27 H -0.285 1.285 28 H -0.270 1.270 29 C 0.096 3.904 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.417 0.583 38 H 0.147 0.853 39 H 0.179 0.821 40 H 0.183 0.817 41 H 0.189 0.811 42 H 0.107 0.893 43 H 0.061 0.939 44 H 0.387 0.613 45 H 0.275 0.725 46 H 0.060 0.940 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.772 -13.445 -8.364 20.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.110 4.110 3 C -0.206 4.206 4 C 0.036 3.964 5 H 0.110 0.890 6 N -0.346 5.346 7 C 0.356 3.644 8 O -0.429 6.429 9 C -0.088 4.088 10 C -0.139 4.139 11 C -0.103 4.103 12 C -0.151 4.151 13 C -0.074 4.074 14 N -0.199 5.199 15 C 0.317 3.683 16 O -0.465 6.465 17 N -0.357 5.357 18 C -0.007 4.007 19 C 0.177 3.823 20 O -0.399 6.399 21 C -0.591 4.591 22 H 0.092 0.908 23 C -0.168 4.168 24 N -0.556 5.556 25 Si 0.793 3.207 26 H -0.196 1.196 27 H -0.211 1.211 28 H -0.195 1.195 29 C -0.027 4.027 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.255 0.745 38 H 0.165 0.835 39 H 0.196 0.804 40 H 0.200 0.800 41 H 0.206 0.794 42 H 0.125 0.875 43 H 0.079 0.921 44 H 0.241 0.759 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.086 -13.576 -8.933 20.865 hybrid contribution -0.072 0.807 0.934 1.237 sum -13.158 -12.769 -7.999 20.004 Atomic orbital electron populations 1.21752 0.92645 1.01415 1.02388 1.21401 0.97714 0.96682 0.95172 1.21963 1.00786 0.94418 1.03444 1.20840 0.89423 0.84319 1.01857 0.88998 1.45620 1.17715 1.09074 1.62156 1.18272 0.81061 0.88035 0.77023 1.90771 1.56839 1.47669 1.47620 1.20882 0.93948 0.92255 1.01754 1.22289 0.94797 0.99646 0.97208 1.22089 1.01630 0.90852 0.95761 1.22877 0.93896 1.02845 0.95492 1.23442 0.96071 0.91868 0.95991 1.67507 1.35569 1.02520 1.14295 1.20419 0.89758 0.81243 0.76864 1.90614 1.70665 1.38230 1.47017 1.50234 1.10098 1.20541 1.54790 1.23492 0.82762 0.97975 0.96513 1.20151 0.91102 0.89254 0.81824 1.86048 1.88654 1.43298 1.21902 1.21691 1.18363 1.01210 1.17867 0.90769 1.25746 0.94980 1.01687 0.94373 1.69475 1.28134 1.38156 1.19844 0.85403 0.79027 0.79032 0.77255 1.19637 1.21108 1.19491 1.24274 1.00963 0.83330 0.94097 0.92658 0.90700 0.93964 0.90529 0.93370 0.89534 0.92232 0.74546 0.83549 0.80403 0.79960 0.79425 0.87490 0.92067 0.75873 0.91530 0.92119 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.41 7.72 71.98 0.56 -2.86 16 2 C -0.09 -2.67 2.68 -10.79 -0.03 -2.70 16 3 C -0.15 -4.14 7.50 71.98 0.54 -3.60 16 4 C 0.14 5.12 2.06 44.25 0.09 5.21 16 5 H 0.09 3.57 7.09 -2.39 -0.02 3.55 16 6 N -0.69 -23.53 4.94 -448.67 -2.22 -25.74 16 7 C 0.57 18.55 6.17 86.88 0.54 19.09 16 8 O -0.55 -19.74 13.45 -3.78 -0.05 -19.79 16 9 C 0.05 1.30 6.75 41.91 0.28 1.58 16 10 C -0.12 -2.42 9.63 22.61 0.22 -2.21 16 11 C -0.08 -0.95 10.17 22.45 0.23 -0.72 16 12 C -0.13 -1.34 10.11 22.44 0.23 -1.11 16 13 C 0.09 1.37 11.18 84.82 0.95 2.31 16 14 N -0.49 -12.09 9.54 -184.91 -1.76 -13.86 16 15 C 0.53 21.62 6.35 87.66 0.56 22.18 16 16 O -0.58 -26.37 16.85 -3.03 -0.05 -26.42 16 17 N -0.62 -26.08 3.06 -839.31 -2.57 -28.65 16 18 C 0.11 4.93 8.23 86.49 0.71 5.64 16 19 C 0.22 10.34 1.40 -10.88 -0.02 10.33 16 20 O -0.59 -30.70 13.49 -148.98 -2.01 -32.71 16 21 C -0.55 -27.11 8.61 25.60 0.22 -26.89 16 22 H 0.07 3.51 7.81 -2.91 -0.02 3.49 16 23 C 0.03 1.60 5.39 84.65 0.46 2.06 16 24 N -0.92 -46.05 11.20 21.45 0.24 -45.81 16 25 Si 0.97 39.07 29.54 68.60 2.03 41.09 16 26 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 27 H -0.29 -11.52 7.11 99.48 0.71 -10.82 16 28 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 29 C 0.10 4.04 5.84 86.42 0.50 4.54 16 30 H 0.05 1.65 7.54 -2.39 -0.02 1.63 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.22 5.77 -2.39 -0.01 1.21 16 33 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.05 1.47 6.46 -2.39 -0.02 1.45 16 35 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 36 H 0.06 1.73 7.17 -2.39 -0.02 1.71 16 37 H 0.42 14.39 7.19 -92.70 -0.67 13.72 16 38 H 0.15 2.96 7.64 -2.91 -0.02 2.94 16 39 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 40 H 0.18 0.32 8.06 -2.91 -0.02 0.29 16 41 H 0.19 1.80 8.06 -2.91 -0.02 1.78 16 42 H 0.11 4.12 8.09 -2.39 -0.02 4.11 16 43 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 44 H 0.39 20.56 6.60 -74.06 -0.49 20.07 16 45 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 46 H 0.06 2.66 7.88 -2.39 -0.02 2.64 16 47 H 0.10 3.96 7.26 -2.39 -0.02 3.94 16 Total: -1.00 -65.05 384.74 -0.50 -65.55 By element: Atomic # 1 Polarization: 53.61 SS G_CDS: -0.13 Total: 53.47 kcal Atomic # 6 Polarization: 26.83 SS G_CDS: 6.03 Total: 32.87 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -6.31 Total: -114.06 kcal Atomic # 8 Polarization: -76.81 SS G_CDS: -2.11 Total: -78.92 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.09 kcal Total: -65.05 -0.50 -65.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356874962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.166 kcal (2) G-P(sol) polarization free energy of solvation -65.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds