Wall clock time and date at job start Wed Apr 1 2020 04:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46705 * 2 1 4 4 C 1.53004 * 109.47041 * 240.00716 * 2 1 3 5 5 C 1.50698 * 109.47294 * 59.99265 * 4 2 1 6 6 H 1.07999 * 120.00345 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99886 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99726 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99983 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47228 * 89.99780 * 9 7 5 11 11 H 1.48494 * 109.46970 * 209.99988 * 9 7 5 12 12 H 1.48501 * 109.47113 * 330.00037 * 9 7 5 13 13 C 1.52993 * 109.47717 * 119.99982 * 2 1 3 14 14 N 1.46503 * 109.47517 * 300.00260 * 13 2 1 15 15 C 1.34774 * 120.00245 * 179.97438 * 14 13 2 16 16 O 1.21359 * 119.99662 * 0.02562 * 15 14 13 17 17 C 1.49353 * 119.99819 * 179.97438 * 15 14 13 18 18 O 1.21377 * 120.00099 * 359.97438 * 17 15 14 19 19 N 1.34775 * 119.99841 * 180.02562 * 17 15 14 20 20 C 1.39756 * 120.00095 * 185.27659 * 19 17 15 21 21 C 1.39047 * 120.00717 * 213.36061 * 20 19 17 22 22 C 1.38194 * 120.21975 * 179.97438 * 21 20 19 23 23 C 1.38034 * 120.22498 * 0.04104 * 22 21 20 24 24 C 1.39583 * 120.01134 * 359.95682 * 23 22 21 25 25 C 1.47860 * 120.11126 * 180.02562 * 24 23 22 26 26 N 1.34783 * 119.99783 * 0.02562 * 25 24 23 27 27 O 1.21547 * 119.99911 * 180.02562 * 25 24 23 28 28 C 1.38654 * 120.00375 * 33.35805 * 20 19 17 29 29 H 1.09007 * 109.46869 * 299.99444 * 1 2 3 30 30 H 1.08999 * 109.47487 * 59.99908 * 1 2 3 31 31 H 1.09002 * 109.47266 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46862 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47224 * 300.00254 * 3 2 1 34 34 H 1.08997 * 109.47043 * 60.00655 * 3 2 1 35 35 H 1.09000 * 109.47379 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.46373 * 299.99668 * 4 2 1 37 37 H 0.97000 * 119.99479 * 180.02562 * 8 7 5 38 38 H 1.09000 * 109.47533 * 179.97438 * 13 2 1 39 39 H 1.09009 * 109.47061 * 60.00245 * 13 2 1 40 40 H 0.97002 * 119.99241 * 0.02562 * 14 13 2 41 41 H 0.97005 * 120.00033 * 5.27682 * 19 17 15 42 42 H 1.08005 * 119.88833 * 0.02562 * 21 20 19 43 43 H 1.07999 * 119.88832 * 180.02562 * 22 21 20 44 44 H 1.08003 * 119.99188 * 179.97438 * 23 22 21 45 45 H 0.96999 * 119.99986 * 0.02562 * 26 25 24 46 46 H 0.96999 * 119.99545 * 180.02562 * 26 25 24 47 47 H 1.07999 * 120.11585 * 0.27060 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.5375 -0.0107 -2.4797 6 1 0.9169 0.8676 -2.3806 7 6 1.8701 -0.4820 -3.7321 8 7 2.6255 -1.5518 -3.8528 9 14 1.2479 0.3990 -5.2572 10 1 2.2267 1.4401 -5.6615 11 1 1.0822 -0.5800 -6.3614 12 1 -0.0598 1.0374 -4.9612 13 6 2.0401 -0.7212 1.2491 14 7 1.5518 -0.0307 2.4454 15 6 1.8771 -0.4915 3.6695 16 8 2.5749 -1.4781 3.7807 17 6 1.3798 0.2129 4.8890 18 8 0.6830 1.2005 4.7777 19 7 1.7055 -0.2476 6.1130 20 6 1.1519 0.3434 7.2521 21 6 1.8937 0.4208 8.4256 22 6 1.3508 1.0048 9.5544 23 6 0.0683 1.5143 9.5247 24 6 -0.6848 1.4417 8.3517 25 6 -2.0586 1.9874 8.3172 26 7 -2.5854 2.5565 9.4196 27 8 -2.7127 1.9226 7.2948 28 6 -0.1371 0.8527 7.2121 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.1300 -0.7208 -1.2497 36 1 1.6766 -1.7488 -1.2493 37 1 2.8598 -1.8831 -4.7338 38 1 3.1301 -0.7216 1.2489 39 1 1.6768 -1.7490 1.2491 40 1 0.9938 0.7577 2.3564 41 1 2.3242 -0.9892 6.2034 42 1 2.8978 0.0240 8.4548 43 1 1.9319 1.0624 10.4629 44 1 -0.3523 1.9695 10.4091 45 1 -2.0632 2.6085 10.2353 46 1 -3.4868 2.9141 9.3970 47 1 -0.7166 0.7898 6.3029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357988034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:29 Heat of formation + Delta-G solvation = -90.114110 kcal Electronic energy + Delta-G solvation = -29478.321573 eV Core-core repulsion = 25239.734058 eV Total energy + Delta-G solvation = -4238.587516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.34435 -40.26494 -39.19251 -38.16670 -37.22324 -35.42808 -34.11389 -33.65088 -32.11102 -31.52078 -30.22769 -27.40901 -26.79703 -26.51945 -24.86109 -24.71644 -23.12277 -22.16277 -21.05373 -20.39142 -19.30227 -18.74307 -17.71630 -17.52819 -16.79562 -16.55594 -16.33758 -16.26074 -16.04944 -15.34649 -15.14173 -14.88728 -14.51334 -14.50525 -14.37667 -14.05342 -13.92926 -13.50767 -13.15664 -13.07686 -12.80627 -12.46430 -12.21243 -12.20130 -12.07198 -11.60814 -11.19846 -11.01943 -10.94105 -10.85144 -10.64924 -10.46012 -10.44451 -10.27225 -10.12673 -9.91734 -9.82297 -9.44251 -9.20920 -9.01737 -8.95519 -8.68355 -8.36882 -6.01142 -4.02241 0.32287 0.74216 1.36702 2.11592 2.46242 3.02496 3.08673 3.31404 3.38427 3.40668 3.44596 3.50198 4.27752 4.32403 4.39165 4.45574 4.54374 4.68098 4.92831 4.98863 5.34485 5.35527 5.38318 5.54188 5.70252 5.71280 5.74568 5.85095 5.86255 6.11555 6.13909 6.17718 6.31856 6.33782 6.34793 6.42981 6.62635 6.64844 6.71116 6.88541 7.03024 7.05639 7.08204 7.27052 7.55132 7.61238 7.72616 7.85055 7.94537 7.97579 8.39072 9.02251 9.61040 11.10252 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019837 B = 0.001913 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.140392 B =14630.242143 C =15693.842199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.073 4.073 3 C -0.130 4.130 4 C 0.037 3.963 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.124 3.876 14 N -0.682 5.682 15 C 0.503 3.497 16 O -0.523 6.523 17 C 0.507 3.493 18 O -0.492 6.492 19 N -0.650 5.650 20 C 0.141 3.859 21 C -0.115 4.115 22 C -0.106 4.106 23 C -0.102 4.102 24 C -0.120 4.120 25 C 0.562 3.438 26 N -0.852 5.852 27 O -0.530 6.530 28 C -0.062 4.062 29 H 0.031 0.969 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.031 0.969 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.260 0.740 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.412 0.588 41 H 0.426 0.574 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.128 0.872 45 H 0.400 0.600 46 H 0.406 0.594 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.312 5.758 31.999 32.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.074 4.074 3 C -0.188 4.188 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C 0.002 3.998 14 N -0.335 5.335 15 C 0.282 3.718 16 O -0.401 6.401 17 C 0.290 3.710 18 O -0.364 6.364 19 N -0.297 5.297 20 C 0.047 3.953 21 C -0.135 4.135 22 C -0.124 4.124 23 C -0.122 4.122 24 C -0.124 4.124 25 C 0.348 3.652 26 N -0.416 5.416 27 O -0.406 6.406 28 C -0.083 4.083 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.250 0.750 41 H 0.264 0.736 42 H 0.153 0.847 43 H 0.154 0.846 44 H 0.146 0.854 45 H 0.230 0.770 46 H 0.237 0.763 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.517 5.493 30.991 31.670 hybrid contribution -0.257 0.582 -0.459 0.785 sum -3.774 6.075 30.532 31.358 Atomic orbital electron populations 1.21800 0.95010 1.01340 1.00651 1.20946 0.95735 0.95989 0.94683 1.21799 1.00576 0.95772 1.00625 1.19095 0.96380 0.95246 0.89336 1.21176 1.31244 1.12086 0.90448 0.92180 1.25015 0.95325 0.95074 0.99121 1.69961 1.36996 1.22962 1.23464 0.86630 0.79224 0.79390 0.82971 1.20775 1.21354 1.19908 1.21889 0.99396 0.96321 0.82187 1.46085 1.50899 1.31571 1.04929 1.19684 0.82383 0.85150 0.84581 1.90778 1.37230 1.25500 1.86558 1.20633 0.81127 0.84458 0.84815 1.90831 1.35227 1.23876 1.86475 1.43172 1.46870 1.36123 1.03546 1.17626 0.92278 0.98566 0.86811 1.21171 0.99701 1.00412 0.92237 1.20889 0.95230 0.98123 0.98193 1.21261 0.94760 0.99418 0.96742 1.19711 0.94542 1.03354 0.94763 1.18240 0.86309 0.77358 0.83290 1.43727 1.20234 1.63453 1.14205 1.90871 1.61862 1.56719 1.31133 1.21304 0.92886 0.95161 0.98900 0.95005 0.91157 0.93219 0.93240 0.91173 0.95028 0.96246 0.96221 0.93037 0.90923 0.90922 0.74992 0.73591 0.84688 0.84633 0.85392 0.77029 0.76307 0.83176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.05 37.16 0.30 -2.05 16 2 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 3 C -0.13 -2.31 8.05 37.16 0.30 -2.01 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.49 7.65 -34.44 -0.26 -13.76 16 6 H 0.06 1.53 5.68 -52.49 -0.30 1.24 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 13 C 0.12 2.11 4.56 -4.04 -0.02 2.09 16 14 N -0.68 -10.18 4.95 -60.76 -0.30 -10.48 16 15 C 0.50 7.31 7.89 -11.63 -0.09 7.22 16 16 O -0.52 -8.48 16.48 5.49 0.09 -8.38 16 17 C 0.51 6.63 7.62 -11.63 -0.09 6.54 16 18 O -0.49 -7.44 14.17 5.47 0.08 -7.37 16 19 N -0.65 -6.61 5.32 -10.33 -0.05 -6.66 16 20 C 0.14 1.37 6.27 -83.79 -0.53 0.85 16 21 C -0.11 -0.76 9.96 -39.30 -0.39 -1.15 16 22 C -0.11 -0.54 10.02 -39.67 -0.40 -0.94 16 23 C -0.10 -0.58 9.54 -39.15 -0.37 -0.95 16 24 C -0.12 -1.11 5.87 -104.99 -0.62 -1.73 16 25 C 0.56 5.71 8.05 -12.32 -0.10 5.61 16 26 N -0.85 -4.36 8.82 30.53 0.27 -4.09 16 27 O -0.53 -7.94 17.18 5.32 0.09 -7.85 16 28 C -0.06 -0.71 8.19 -38.96 -0.32 -1.03 16 29 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 30 H 0.07 1.36 6.62 -51.93 -0.34 1.01 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.88 8.14 -51.92 -0.42 0.45 16 33 H 0.07 1.34 6.62 -51.93 -0.34 0.99 16 34 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.07 1.28 8.14 -51.92 -0.42 0.85 16 40 H 0.41 5.89 5.63 -40.82 -0.23 5.66 16 41 H 0.43 3.48 8.30 -40.82 -0.34 3.14 16 42 H 0.14 0.59 8.06 -52.48 -0.42 0.16 16 43 H 0.14 0.31 8.06 -52.49 -0.42 -0.12 16 44 H 0.13 0.27 6.40 -52.48 -0.34 -0.07 16 45 H 0.40 0.71 6.86 -40.82 -0.28 0.43 16 46 H 0.41 1.66 8.93 -40.82 -0.36 1.29 16 47 H 0.15 2.15 6.02 -52.49 -0.32 1.83 16 LS Contribution 390.86 15.07 5.89 5.89 Total: -1.00 -34.81 390.86 -7.18 -41.99 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.08 Total: 6.75 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -2.88 Total: -0.55 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.65 Total: -46.70 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: 0.26 Total: -23.60 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.81 -7.18 -41.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357988034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.128 kcal (2) G-P(sol) polarization free energy of solvation -34.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds