Wall clock time and date at job start Wed Apr 1 2020 04:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46705 * 2 1 4 4 C 1.53004 * 109.47041 * 240.00716 * 2 1 3 5 5 C 1.50698 * 109.47294 * 59.99265 * 4 2 1 6 6 H 1.07999 * 120.00345 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99886 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99726 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99983 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47228 * 89.99780 * 9 7 5 11 11 H 1.48494 * 109.46970 * 209.99988 * 9 7 5 12 12 H 1.48501 * 109.47113 * 330.00037 * 9 7 5 13 13 C 1.52993 * 109.47717 * 119.99982 * 2 1 3 14 14 N 1.46503 * 109.47517 * 300.00260 * 13 2 1 15 15 C 1.34774 * 120.00245 * 179.97438 * 14 13 2 16 16 O 1.21359 * 119.99662 * 0.02562 * 15 14 13 17 17 C 1.49353 * 119.99819 * 179.97438 * 15 14 13 18 18 O 1.21377 * 120.00099 * 359.97438 * 17 15 14 19 19 N 1.34775 * 119.99841 * 180.02562 * 17 15 14 20 20 C 1.39756 * 120.00095 * 185.27659 * 19 17 15 21 21 C 1.39047 * 120.00717 * 213.36061 * 20 19 17 22 22 C 1.38194 * 120.21975 * 179.97438 * 21 20 19 23 23 C 1.38034 * 120.22498 * 0.04104 * 22 21 20 24 24 C 1.39583 * 120.01134 * 359.95682 * 23 22 21 25 25 C 1.47860 * 120.11126 * 180.02562 * 24 23 22 26 26 N 1.34783 * 119.99783 * 0.02562 * 25 24 23 27 27 O 1.21547 * 119.99911 * 180.02562 * 25 24 23 28 28 C 1.38654 * 120.00375 * 33.35805 * 20 19 17 29 29 H 1.09007 * 109.46869 * 299.99444 * 1 2 3 30 30 H 1.08999 * 109.47487 * 59.99908 * 1 2 3 31 31 H 1.09002 * 109.47266 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46862 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47224 * 300.00254 * 3 2 1 34 34 H 1.08997 * 109.47043 * 60.00655 * 3 2 1 35 35 H 1.09000 * 109.47379 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.46373 * 299.99668 * 4 2 1 37 37 H 0.97000 * 119.99479 * 180.02562 * 8 7 5 38 38 H 1.09000 * 109.47533 * 179.97438 * 13 2 1 39 39 H 1.09009 * 109.47061 * 60.00245 * 13 2 1 40 40 H 0.97002 * 119.99241 * 0.02562 * 14 13 2 41 41 H 0.97005 * 120.00033 * 5.27682 * 19 17 15 42 42 H 1.08005 * 119.88833 * 0.02562 * 21 20 19 43 43 H 1.07999 * 119.88832 * 180.02562 * 22 21 20 44 44 H 1.08003 * 119.99188 * 179.97438 * 23 22 21 45 45 H 0.96999 * 119.99986 * 0.02562 * 26 25 24 46 46 H 0.96999 * 119.99545 * 180.02562 * 26 25 24 47 47 H 1.07999 * 120.11585 * 0.27060 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.5375 -0.0107 -2.4797 6 1 0.9169 0.8676 -2.3806 7 6 1.8701 -0.4820 -3.7321 8 7 2.6255 -1.5518 -3.8528 9 14 1.2479 0.3990 -5.2572 10 1 2.2267 1.4401 -5.6615 11 1 1.0822 -0.5800 -6.3614 12 1 -0.0598 1.0374 -4.9612 13 6 2.0401 -0.7212 1.2491 14 7 1.5518 -0.0307 2.4454 15 6 1.8771 -0.4915 3.6695 16 8 2.5749 -1.4781 3.7807 17 6 1.3798 0.2129 4.8890 18 8 0.6830 1.2005 4.7777 19 7 1.7055 -0.2476 6.1130 20 6 1.1519 0.3434 7.2521 21 6 1.8937 0.4208 8.4256 22 6 1.3508 1.0048 9.5544 23 6 0.0683 1.5143 9.5247 24 6 -0.6848 1.4417 8.3517 25 6 -2.0586 1.9874 8.3172 26 7 -2.5854 2.5565 9.4196 27 8 -2.7127 1.9226 7.2948 28 6 -0.1371 0.8527 7.2121 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.1300 -0.7208 -1.2497 36 1 1.6766 -1.7488 -1.2493 37 1 2.8598 -1.8831 -4.7338 38 1 3.1301 -0.7216 1.2489 39 1 1.6768 -1.7490 1.2491 40 1 0.9938 0.7577 2.3564 41 1 2.3242 -0.9892 6.2034 42 1 2.8978 0.0240 8.4548 43 1 1.9319 1.0624 10.4629 44 1 -0.3523 1.9695 10.4091 45 1 -2.0632 2.6085 10.2353 46 1 -3.4868 2.9141 9.3970 47 1 -0.7166 0.7898 6.3029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357988034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:29 Heat of formation + Delta-G solvation = -117.649768 kcal Electronic energy + Delta-G solvation = -29479.515609 eV Core-core repulsion = 25239.734058 eV Total energy + Delta-G solvation = -4239.781551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.28666 -41.11696 -40.23958 -39.03237 -38.68685 -36.32136 -35.26465 -34.73898 -33.95540 -32.09911 -30.92742 -29.22945 -28.23340 -28.01035 -26.10454 -25.36172 -24.67300 -23.14656 -21.77306 -21.47050 -20.43717 -19.60964 -18.98918 -18.38764 -18.29923 -17.67887 -17.32155 -17.09802 -16.96045 -16.61733 -16.36335 -16.03576 -15.83369 -15.50434 -15.33250 -14.97351 -14.91135 -14.76622 -14.56585 -14.39403 -13.96098 -13.86544 -13.72596 -13.14141 -12.89667 -12.89131 -12.74121 -12.64293 -12.48792 -12.35702 -12.25395 -12.01394 -11.71704 -11.58037 -11.24034 -11.15393 -10.91514 -10.76908 -10.75749 -10.50691 -10.33180 -10.02391 -9.36576 -8.14135 -6.20939 -0.31180 -0.04044 0.49119 1.11184 1.42286 1.42869 1.53017 1.75614 2.00524 2.36719 2.44516 2.56871 2.81960 3.20453 3.24568 3.79290 3.86953 3.87657 4.02785 4.06276 4.13981 4.17393 4.36507 4.39007 4.63027 4.66683 4.68409 4.80945 4.91375 4.96961 5.09107 5.10612 5.13738 5.19761 5.24307 5.33598 5.39776 5.47853 5.49586 5.55123 5.73730 5.77357 5.82257 5.86723 5.89788 6.19268 6.32012 6.40264 6.56493 6.77364 6.93321 7.26745 7.46248 8.98004 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019837 B = 0.001913 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.140392 B =14630.242143 C =15693.842199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.066 4.066 3 C -0.125 4.125 4 C 0.042 3.958 5 C -0.515 4.515 6 H 0.069 0.931 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.956 3.044 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.263 1.263 13 C 0.137 3.863 14 N -0.679 5.679 15 C 0.507 3.493 16 O -0.540 6.540 17 C 0.512 3.488 18 O -0.517 6.517 19 N -0.633 5.633 20 C 0.115 3.885 21 C -0.103 4.103 22 C -0.096 4.096 23 C -0.083 4.083 24 C -0.139 4.139 25 C 0.556 3.444 26 N -0.824 5.824 27 O -0.594 6.594 28 C -0.092 4.092 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.060 0.940 35 H -0.006 1.006 36 H -0.008 1.008 37 H 0.260 0.740 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.417 0.583 41 H 0.434 0.566 42 H 0.163 0.837 43 H 0.180 0.820 44 H 0.171 0.829 45 H 0.420 0.580 46 H 0.413 0.587 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.022 7.379 35.815 36.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.066 4.066 3 C -0.183 4.183 4 C 0.005 3.995 5 C -0.553 4.553 6 H 0.087 0.913 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.782 3.218 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.188 1.188 13 C 0.014 3.986 14 N -0.332 5.332 15 C 0.287 3.713 16 O -0.418 6.418 17 C 0.293 3.707 18 O -0.392 6.392 19 N -0.281 5.281 20 C 0.022 3.978 21 C -0.123 4.123 22 C -0.114 4.114 23 C -0.102 4.102 24 C -0.143 4.143 25 C 0.342 3.658 26 N -0.389 5.389 27 O -0.475 6.475 28 C -0.113 4.113 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.012 0.988 36 H 0.010 0.990 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.256 0.744 41 H 0.275 0.725 42 H 0.181 0.819 43 H 0.197 0.803 44 H 0.188 0.812 45 H 0.253 0.747 46 H 0.245 0.755 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.226 7.136 34.913 35.781 hybrid contribution -0.325 0.066 -1.428 1.466 sum -3.551 7.201 33.485 34.434 Atomic orbital electron populations 1.21735 0.94038 1.01211 1.01351 1.20740 0.96413 0.96345 0.93132 1.21731 1.00360 0.94771 1.01405 1.18952 0.94661 0.94290 0.91641 1.21578 1.30462 1.12031 0.91196 0.91298 1.25897 0.95743 0.95883 1.02535 1.70101 1.38705 1.24730 1.24066 0.85573 0.79060 0.78167 0.79000 1.20158 1.21475 1.18761 1.21534 0.98956 0.95788 0.82347 1.45902 1.51091 1.31630 1.04564 1.19931 0.81707 0.84775 0.84864 1.90766 1.37941 1.26237 1.86872 1.20240 0.81090 0.84173 0.85155 1.90832 1.36555 1.25050 1.86755 1.43035 1.46208 1.35944 1.02944 1.17816 0.92283 1.00153 0.87548 1.21573 1.00479 0.99131 0.91114 1.21443 0.95005 0.95988 0.98966 1.21738 0.94546 0.97521 0.96350 1.19764 0.94600 1.04266 0.95665 1.18560 0.86632 0.77180 0.83405 1.43507 1.20564 1.61244 1.13561 1.90836 1.63432 1.59571 1.33668 1.21136 0.93857 0.97684 0.98612 0.92204 0.92458 0.93815 0.93594 0.92461 0.92090 0.98812 0.98969 0.93151 0.91440 0.91754 0.74423 0.72508 0.81929 0.80297 0.81157 0.74703 0.75489 0.87267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 8.05 71.98 0.58 -3.94 16 2 C -0.07 -2.52 0.54 -52.18 -0.03 -2.55 16 3 C -0.13 -4.40 8.05 71.98 0.58 -3.82 16 4 C 0.04 2.11 4.04 29.85 0.12 2.23 16 5 C -0.51 -27.67 7.65 25.60 0.20 -27.47 16 6 H 0.07 3.52 5.68 -2.91 -0.02 3.51 16 7 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 8 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 9 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 12 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 13 C 0.14 4.73 4.56 86.38 0.39 5.13 16 14 N -0.68 -20.27 4.95 -464.51 -2.30 -22.57 16 15 C 0.51 14.83 7.89 87.24 0.69 15.52 16 16 O -0.54 -17.53 16.48 -3.28 -0.05 -17.59 16 17 C 0.51 13.59 7.62 87.24 0.66 14.26 16 18 O -0.52 -16.25 14.17 -3.33 -0.05 -16.29 16 19 N -0.63 -12.67 5.32 -304.93 -1.62 -14.30 16 20 C 0.12 2.14 6.27 38.17 0.24 2.38 16 21 C -0.10 -1.00 9.96 22.45 0.22 -0.78 16 22 C -0.10 -0.50 10.02 22.21 0.22 -0.27 16 23 C -0.08 -0.60 9.54 22.55 0.22 -0.38 16 24 C -0.14 -2.45 5.87 -20.11 -0.12 -2.57 16 25 C 0.56 11.23 8.05 86.79 0.70 11.93 16 26 N -0.82 -6.81 8.82 -175.59 -1.55 -8.36 16 27 O -0.59 -19.00 17.18 -3.86 -0.07 -19.07 16 28 C -0.09 -2.17 8.19 22.67 0.19 -1.99 16 29 H 0.06 1.80 6.86 -2.38 -0.02 1.78 16 30 H 0.06 2.20 6.62 -2.39 -0.02 2.18 16 31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.06 2.15 6.62 -2.39 -0.02 2.14 16 34 H 0.06 1.77 6.86 -2.39 -0.02 1.76 16 35 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H -0.01 -0.45 8.14 -2.39 -0.02 -0.46 16 37 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 38 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 40 H 0.42 11.71 5.63 -92.71 -0.52 11.19 16 41 H 0.43 6.72 8.30 -92.70 -0.77 5.95 16 42 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 43 H 0.18 -0.50 8.06 -2.91 -0.02 -0.52 16 44 H 0.17 -0.31 6.40 -2.91 -0.02 -0.33 16 45 H 0.42 -0.08 6.86 -92.71 -0.64 -0.71 16 46 H 0.41 2.71 8.93 -92.71 -0.83 1.88 16 47 H 0.11 3.47 6.02 -2.91 -0.02 3.45 16 Total: -1.00 -81.59 390.86 0.31 -81.28 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -1.69 Total: 18.98 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 5.32 Total: 7.93 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -5.19 Total: -101.34 kcal Atomic # 8 Polarization: -52.78 SS G_CDS: -0.17 Total: -52.95 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -81.59 0.31 -81.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357988034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.368 kcal (2) G-P(sol) polarization free energy of solvation -81.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds