Wall clock time and date at job start Wed Apr 1 2020 05:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47163 * 2 1 4 4 C 1.53000 * 109.47301 * 239.99391 * 2 1 3 5 5 N 1.46502 * 109.46802 * 119.99346 * 2 1 3 6 6 C 1.34778 * 119.99946 * 60.00598 * 5 2 1 7 7 O 1.21587 * 120.00017 * 359.97438 * 6 5 2 8 8 C 1.47607 * 120.00345 * 179.97438 * 6 5 2 9 9 C 1.39753 * 120.06923 * 179.97438 * 8 6 5 10 10 C 1.37654 * 119.92746 * 180.29657 * 9 8 6 11 11 C 1.39177 * 120.07218 * 359.45645 * 10 9 8 12 12 N 1.39279 * 119.93707 * 180.25157 * 11 10 9 13 13 C 1.34779 * 119.99396 * 33.75161 * 12 11 10 14 14 O 1.21360 * 120.00201 * 5.27645 * 13 12 11 15 15 C 1.49367 * 119.99539 * 185.27827 * 13 12 11 16 16 O 1.21359 * 119.99796 * 359.97438 * 15 13 12 17 17 N 1.34779 * 119.99539 * 179.97438 * 15 13 12 18 18 C 1.46496 * 119.99627 * 179.97438 * 17 15 13 19 19 C 1.50702 * 109.47339 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99739 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00225 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99918 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 120.00130 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47120 * 90.00246 * 23 21 19 25 25 H 1.48494 * 109.47654 * 210.00471 * 23 21 19 26 26 H 1.48501 * 109.47108 * 330.00803 * 23 21 19 27 27 C 1.39182 * 120.13554 * 0.54929 * 11 10 9 28 28 C 1.37665 * 120.06886 * 359.72871 * 27 11 10 29 29 H 1.08994 * 109.47034 * 300.00503 * 1 2 3 30 30 H 1.09008 * 109.46564 * 60.00681 * 1 2 3 31 31 H 1.08998 * 109.47352 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46959 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.46824 * 299.99159 * 3 2 1 34 34 H 1.08994 * 109.47556 * 59.99816 * 3 2 1 35 35 H 1.08998 * 109.47246 * 300.00467 * 4 2 1 36 36 H 1.09003 * 109.46671 * 60.00452 * 4 2 1 37 37 H 1.08995 * 109.47186 * 180.02562 * 4 2 1 38 38 H 0.97001 * 120.00055 * 239.99575 * 5 2 1 39 39 H 1.07998 * 120.03550 * 0.03169 * 9 8 6 40 40 H 1.08002 * 119.96748 * 179.70273 * 10 9 8 41 41 H 0.96990 * 120.00089 * 213.74984 * 12 11 10 42 42 H 0.96998 * 120.00154 * 359.97438 * 17 15 13 43 43 H 1.08997 * 109.47355 * 300.00046 * 18 17 15 44 44 H 1.09003 * 109.47406 * 59.99973 * 18 17 15 45 45 H 0.96999 * 120.00217 * 179.97438 * 22 21 19 46 46 H 1.07998 * 119.97008 * 179.70510 * 27 11 10 47 47 H 1.07989 * 120.03752 * 179.97438 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 2.0183 -0.6905 1.1963 6 6 1.6927 -1.9808 1.4096 7 8 0.9934 -2.5717 0.6095 8 6 2.1851 -2.6768 2.6146 9 6 1.8479 -4.0146 2.8375 10 6 2.3036 -4.6590 3.9653 11 6 3.1087 -3.9831 4.8774 12 7 3.5725 -4.6394 6.0149 13 6 3.8632 -5.9544 5.9627 14 8 3.8129 -6.5454 4.9039 15 6 4.2472 -6.6843 7.2080 16 8 4.2979 -6.0932 8.2666 17 7 4.5374 -7.9995 7.1558 18 6 4.9146 -8.7153 8.3770 19 6 5.1866 -10.1607 8.0485 20 1 5.0879 -10.5111 7.0317 21 6 5.5604 -11.0359 9.0461 22 7 5.7973 -12.2974 8.7593 23 14 5.7304 -10.4301 10.8048 24 1 4.4297 -10.5758 11.5065 25 1 6.7642 -11.2321 11.5070 26 1 6.1322 -9.0005 10.7992 27 6 3.4462 -2.6507 4.6584 28 6 2.9888 -1.9990 3.5353 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6767 -1.7490 -1.2491 36 1 1.6768 -0.2075 -2.1392 37 1 3.1300 -0.7218 -1.2489 38 1 2.5760 -0.2190 1.8347 39 1 1.2270 -4.5410 2.1278 40 1 2.0395 -5.6915 4.1406 41 1 3.6864 -4.1501 6.8446 42 1 4.4965 -8.4720 6.3096 43 1 5.8121 -8.2642 8.8001 44 1 4.1014 -8.6536 9.1003 45 1 6.0606 -12.9131 9.4611 46 1 4.0671 -2.1273 5.3703 47 1 3.2506 -0.9650 3.3660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427864125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:26 Heat of formation + Delta-G solvation = -79.671552 kcal Electronic energy + Delta-G solvation = -28954.322693 eV Core-core repulsion = 24716.188001 eV Total energy + Delta-G solvation = -4238.134692 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.17254 -40.54234 -39.10597 -38.00280 -36.77832 -35.39935 -34.40042 -32.72912 -32.45512 -31.22665 -29.97794 -28.43760 -27.83800 -27.61398 -25.51958 -23.54944 -23.29446 -21.85557 -21.16637 -20.25340 -19.82426 -18.93583 -18.35172 -17.57046 -16.86358 -16.37226 -15.93161 -15.84778 -15.51148 -15.32028 -15.18122 -14.75284 -14.49014 -14.46142 -14.17095 -14.08301 -13.89932 -13.72329 -13.28394 -13.04999 -12.96933 -12.78524 -12.51084 -12.49722 -12.48161 -12.31714 -12.01749 -11.70044 -11.56420 -11.43514 -11.41799 -11.12612 -10.87738 -10.66122 -10.07818 -9.96619 -9.61160 -9.47029 -9.45497 -9.27674 -8.90892 -8.51225 -8.44776 -6.28886 -4.33273 0.42556 1.06630 1.55320 2.37782 2.61510 2.75850 3.19860 3.27437 3.32254 3.36722 3.61779 3.82515 4.22176 4.24709 4.39736 4.48326 4.54518 4.57805 4.63406 4.79860 4.96162 5.05162 5.06792 5.09713 5.18682 5.19751 5.33622 5.36302 5.41636 5.56445 5.57006 5.64803 5.74815 5.89602 5.91961 5.99786 6.05793 6.13158 6.21914 6.51964 6.58241 6.76388 6.85712 6.92777 7.18238 7.19237 7.56212 7.91186 7.92894 8.28618 8.38033 8.70719 9.28089 10.82785 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.034998 B = 0.001614 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.850582 B =17340.602364 C =17814.400139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.168 3.832 3 C -0.156 4.156 4 C -0.165 4.165 5 N -0.723 5.723 6 C 0.566 3.434 7 O -0.533 6.533 8 C -0.160 4.160 9 C -0.034 4.034 10 C -0.131 4.131 11 C 0.181 3.819 12 N -0.652 5.652 13 C 0.510 3.490 14 O -0.493 6.493 15 C 0.494 3.506 16 O -0.537 6.537 17 N -0.662 5.662 18 C 0.218 3.782 19 C -0.550 4.550 20 H 0.083 0.917 21 C 0.080 3.920 22 N -0.887 5.887 23 Si 0.877 3.123 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.261 1.261 27 C -0.153 4.153 28 C -0.065 4.065 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.398 0.602 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.425 0.575 42 H 0.411 0.589 43 H 0.034 0.966 44 H 0.029 0.971 45 H 0.269 0.731 46 H 0.135 0.865 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.502 29.170 -14.716 33.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.083 3.917 3 C -0.213 4.213 4 C -0.223 4.223 5 N -0.376 5.376 6 C 0.354 3.646 7 O -0.411 6.411 8 C -0.164 4.164 9 C -0.054 4.054 10 C -0.151 4.151 11 C 0.085 3.915 12 N -0.299 5.299 13 C 0.293 3.707 14 O -0.365 6.365 15 C 0.272 3.728 16 O -0.416 6.416 17 N -0.311 5.311 18 C 0.096 3.904 19 C -0.588 4.588 20 H 0.101 0.899 21 C -0.124 4.124 22 N -0.523 5.523 23 Si 0.703 3.297 24 H -0.197 1.197 25 H -0.207 1.207 26 H -0.185 1.185 27 C -0.173 4.173 28 C -0.084 4.084 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.233 0.767 39 H 0.159 0.841 40 H 0.162 0.838 41 H 0.264 0.736 42 H 0.247 0.753 43 H 0.052 0.948 44 H 0.047 0.953 45 H 0.079 0.921 46 H 0.153 0.847 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.916 28.442 -15.165 33.190 hybrid contribution 0.552 0.441 1.333 1.508 sum -7.364 28.883 -13.833 32.860 Atomic orbital electron populations 1.22234 0.94113 1.04192 1.01703 1.20348 0.94537 0.91702 0.85084 1.22099 1.01655 0.94467 1.03127 1.22236 1.00990 1.02906 0.96159 1.46095 1.54103 1.12022 1.25380 1.18180 0.79679 0.81335 0.85363 1.90721 1.37725 1.66207 1.46422 1.19888 1.04194 0.95608 0.96741 1.21134 0.95952 0.92495 0.95783 1.21218 0.97391 1.01714 0.94811 1.17985 0.93397 0.92024 0.88107 1.43212 1.63806 1.09789 1.13087 1.20840 0.77286 0.82262 0.90350 1.90784 1.48342 1.66797 1.30622 1.19661 0.80905 0.84246 0.87969 1.90735 1.53158 1.67438 1.30259 1.46136 1.63004 1.07220 1.14749 1.19738 0.95899 0.92521 0.82220 1.21041 1.49255 0.90733 0.97774 0.89874 1.24777 0.93930 0.94564 0.99159 1.69872 1.45184 1.03360 1.33931 0.86822 0.78687 0.79754 0.84435 1.19730 1.20730 1.18519 1.20834 1.03182 0.93859 0.99473 1.20990 0.95403 0.99141 0.92870 0.92721 0.91876 0.90180 0.91879 0.90740 0.91897 0.90169 0.91872 0.92679 0.76659 0.84147 0.83842 0.73620 0.75308 0.94826 0.95268 0.92076 0.84706 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 8.40 37.16 0.31 -0.87 16 2 C 0.17 1.09 1.06 -131.82 -0.14 0.95 16 3 C -0.16 -0.60 8.59 37.16 0.32 -0.28 16 4 C -0.16 -1.22 8.40 37.16 0.31 -0.91 16 5 N -0.72 -4.96 5.05 -48.61 -0.25 -5.21 16 6 C 0.57 5.66 7.18 -12.44 -0.09 5.57 16 7 O -0.53 -6.91 12.54 5.29 0.07 -6.84 16 8 C -0.16 -1.56 5.88 -104.94 -0.62 -2.17 16 9 C -0.03 -0.38 9.58 -39.23 -0.38 -0.76 16 10 C -0.13 -1.57 8.62 -39.45 -0.34 -1.91 16 11 C 0.18 2.00 6.27 -83.78 -0.53 1.47 16 12 N -0.65 -7.73 5.30 -10.28 -0.05 -7.79 16 13 C 0.51 7.75 7.61 -11.62 -0.09 7.66 16 14 O -0.49 -8.27 14.17 5.49 0.08 -8.19 16 15 C 0.49 8.90 7.89 -11.62 -0.09 8.80 16 16 O -0.54 -10.52 16.48 5.49 0.09 -10.43 16 17 N -0.66 -13.20 5.54 -61.94 -0.34 -13.54 16 18 C 0.22 5.08 4.50 -5.19 -0.02 5.06 16 19 C -0.55 -14.71 9.83 -34.44 -0.34 -15.05 16 20 H 0.08 2.35 7.84 -52.49 -0.41 1.94 16 21 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 22 N -0.89 -25.81 13.96 55.43 0.77 -25.03 16 23 Si 0.88 20.52 27.47 -169.99 -4.67 15.85 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 27 C -0.15 -1.27 9.94 -39.44 -0.39 -1.66 16 28 C -0.06 -0.48 9.53 -39.22 -0.37 -0.85 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 31 H 0.08 0.79 6.16 -51.93 -0.32 0.47 16 32 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.24 8.14 -51.92 -0.42 -0.18 16 34 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.08 0.81 6.16 -51.93 -0.32 0.49 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.40 1.71 6.49 -40.82 -0.27 1.45 16 39 H 0.14 1.55 7.64 -52.49 -0.40 1.15 16 40 H 0.14 1.88 6.43 -52.49 -0.34 1.55 16 41 H 0.43 4.25 8.29 -40.82 -0.34 3.91 16 42 H 0.41 7.81 7.79 -40.82 -0.32 7.49 16 43 H 0.03 0.81 7.20 -51.93 -0.37 0.43 16 44 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 45 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 47 H 0.13 0.51 6.39 -52.49 -0.34 0.18 16 LS Contribution 391.35 15.07 5.90 5.90 Total: -1.00 -32.49 391.35 -7.32 -39.81 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -6.36 Total: 8.33 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -2.55 Total: 7.16 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.13 Total: -51.58 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: 0.23 Total: -25.47 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.85 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.49 -7.32 -39.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427864125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.860 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds