Wall clock time and date at job start Wed Apr 1 2020 05:01:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52999 * 109.47163 * 2 1
4 4 C 1.53000 * 109.47301 * 239.99391 * 2 1 3
5 5 N 1.46502 * 109.46802 * 119.99346 * 2 1 3
6 6 C 1.34778 * 119.99946 * 60.00598 * 5 2 1
7 7 O 1.21587 * 120.00017 * 359.97438 * 6 5 2
8 8 C 1.47607 * 120.00345 * 179.97438 * 6 5 2
9 9 C 1.39753 * 120.06923 * 179.97438 * 8 6 5
10 10 C 1.37654 * 119.92746 * 180.29657 * 9 8 6
11 11 C 1.39177 * 120.07218 * 359.45645 * 10 9 8
12 12 N 1.39279 * 119.93707 * 180.25157 * 11 10 9
13 13 C 1.34779 * 119.99396 * 33.75161 * 12 11 10
14 14 O 1.21360 * 120.00201 * 5.27645 * 13 12 11
15 15 C 1.49367 * 119.99539 * 185.27827 * 13 12 11
16 16 O 1.21359 * 119.99796 * 359.97438 * 15 13 12
17 17 N 1.34779 * 119.99539 * 179.97438 * 15 13 12
18 18 C 1.46496 * 119.99627 * 179.97438 * 17 15 13
19 19 C 1.50702 * 109.47339 * 180.02562 * 18 17 15
20 20 H 1.07999 * 119.99739 * 359.97438 * 19 18 17
21 21 C 1.37877 * 120.00225 * 180.02562 * 19 18 17
22 22 N 1.31516 * 119.99918 * 179.97438 * 21 19 18
23 23 Si 1.86794 * 120.00130 * 359.97438 * 21 19 18
24 24 H 1.48501 * 109.47120 * 90.00246 * 23 21 19
25 25 H 1.48494 * 109.47654 * 210.00471 * 23 21 19
26 26 H 1.48501 * 109.47108 * 330.00803 * 23 21 19
27 27 C 1.39182 * 120.13554 * 0.54929 * 11 10 9
28 28 C 1.37665 * 120.06886 * 359.72871 * 27 11 10
29 29 H 1.08994 * 109.47034 * 300.00503 * 1 2 3
30 30 H 1.09008 * 109.46564 * 60.00681 * 1 2 3
31 31 H 1.08998 * 109.47352 * 180.02562 * 1 2 3
32 32 H 1.09004 * 109.46959 * 180.02562 * 3 2 1
33 33 H 1.09008 * 109.46824 * 299.99159 * 3 2 1
34 34 H 1.08994 * 109.47556 * 59.99816 * 3 2 1
35 35 H 1.08998 * 109.47246 * 300.00467 * 4 2 1
36 36 H 1.09003 * 109.46671 * 60.00452 * 4 2 1
37 37 H 1.08995 * 109.47186 * 180.02562 * 4 2 1
38 38 H 0.97001 * 120.00055 * 239.99575 * 5 2 1
39 39 H 1.07998 * 120.03550 * 0.03169 * 9 8 6
40 40 H 1.08002 * 119.96748 * 179.70273 * 10 9 8
41 41 H 0.96990 * 120.00089 * 213.74984 * 12 11 10
42 42 H 0.96998 * 120.00154 * 359.97438 * 17 15 13
43 43 H 1.08997 * 109.47355 * 300.00046 * 18 17 15
44 44 H 1.09003 * 109.47406 * 59.99973 * 18 17 15
45 45 H 0.96999 * 120.00217 * 179.97438 * 22 21 19
46 46 H 1.07998 * 119.97008 * 179.70510 * 27 11 10
47 47 H 1.07989 * 120.03752 * 179.97438 * 28 27 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0401 -0.7214 -1.2492
5 7 2.0183 -0.6905 1.1963
6 6 1.6927 -1.9808 1.4096
7 8 0.9934 -2.5717 0.6095
8 6 2.1851 -2.6768 2.6146
9 6 1.8479 -4.0146 2.8375
10 6 2.3036 -4.6590 3.9653
11 6 3.1087 -3.9831 4.8774
12 7 3.5725 -4.6394 6.0149
13 6 3.8632 -5.9544 5.9627
14 8 3.8129 -6.5454 4.9039
15 6 4.2472 -6.6843 7.2080
16 8 4.2979 -6.0932 8.2666
17 7 4.5374 -7.9995 7.1558
18 6 4.9146 -8.7153 8.3770
19 6 5.1866 -10.1607 8.0485
20 1 5.0879 -10.5111 7.0317
21 6 5.5604 -11.0359 9.0461
22 7 5.7973 -12.2974 8.7593
23 14 5.7304 -10.4301 10.8048
24 1 4.4297 -10.5758 11.5065
25 1 6.7642 -11.2321 11.5070
26 1 6.1322 -9.0005 10.7992
27 6 3.4462 -2.6507 4.6584
28 6 2.9888 -1.9990 3.5353
29 1 -0.3633 0.5139 0.8899
30 1 -0.3633 0.5138 -0.8901
31 1 -0.3634 -1.0276 0.0005
32 1 3.1301 1.4424 -0.0005
33 1 1.6768 1.9563 -0.8901
34 1 1.6767 1.9564 0.8899
35 1 1.6767 -1.7490 -1.2491
36 1 1.6768 -0.2075 -2.1392
37 1 3.1300 -0.7218 -1.2489
38 1 2.5760 -0.2190 1.8347
39 1 1.2270 -4.5410 2.1278
40 1 2.0395 -5.6915 4.1406
41 1 3.6864 -4.1501 6.8446
42 1 4.4965 -8.4720 6.3096
43 1 5.8121 -8.2642 8.8001
44 1 4.1014 -8.6536 9.1003
45 1 6.0606 -12.9131 9.4611
46 1 4.0671 -2.1273 5.3703
47 1 3.2506 -0.9650 3.3660
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000427864125.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:01:25
Heat of formation + Delta-G solvation = -104.077462 kcal
Electronic energy + Delta-G solvation = -28955.381013 eV
Core-core repulsion = 24716.188001 eV
Total energy + Delta-G solvation = -4239.193012 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-42.25810 -41.39063 -40.26582 -39.12493 -37.47805 -36.70323 -35.85135 -34.44090
-33.43066 -31.98775 -30.88302 -30.23132 -28.22418 -28.18885 -26.78029 -24.78049
-24.11256 -23.35659 -21.99096 -21.53438 -20.55858 -20.23496 -19.16137 -18.66597
-18.56661 -17.39974 -17.23758 -16.98465 -16.79620 -16.21208 -16.03865 -16.03236
-15.80987 -15.19992 -15.17036 -15.02854 -14.89569 -14.57788 -14.46592 -14.43508
-14.12691 -13.83120 -13.72405 -13.24505 -13.13879 -13.01854 -12.99218 -12.83892
-12.70215 -12.53881 -12.33469 -12.09873 -11.97084 -11.91904 -11.70932 -11.59962
-10.93773 -10.86351 -10.68530 -10.20502 -10.12582 -10.08232 -9.35189 -8.40102
-6.50059 -0.46066 0.31505 0.31885 1.16279 1.36710 1.38623 1.49809
1.76134 2.06696 2.14431 2.28600 2.58243 2.81672 2.94932 3.33263
3.65216 3.74009 3.86466 3.97266 4.01946 4.15139 4.20809 4.30540
4.37109 4.63871 4.71769 4.74055 4.78599 4.88400 4.92147 4.94326
4.95035 4.98620 5.02075 5.08948 5.13120 5.18413 5.22914 5.25469
5.28502 5.40472 5.41094 5.61861 5.71546 5.82885 6.03661 6.40340
6.51067 6.60497 6.64055 6.85804 7.16473 7.25384 8.74839
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.034998 B = 0.001614 C = 0.001571
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 799.850582 B =17340.602364 C =17814.400139
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.164 3.836
3 C -0.149 4.149
4 C -0.163 4.163
5 N -0.706 5.706
6 C 0.561 3.439
7 O -0.570 6.570
8 C -0.162 4.162
9 C -0.050 4.050
10 C -0.146 4.146
11 C 0.159 3.841
12 N -0.632 5.632
13 C 0.519 3.481
14 O -0.514 6.514
15 C 0.500 3.500
16 O -0.548 6.548
17 N -0.671 5.671
18 C 0.229 3.771
19 C -0.557 4.557
20 H 0.053 0.947
21 C 0.025 3.975
22 N -0.932 5.932
23 Si 0.944 3.056
24 H -0.263 1.263
25 H -0.275 1.275
26 H -0.249 1.249
27 C -0.136 4.136
28 C -0.049 4.049
29 H 0.060 0.940
30 H 0.076 0.924
31 H 0.046 0.954
32 H 0.073 0.927
33 H 0.083 0.917
34 H 0.074 0.926
35 H 0.046 0.954
36 H 0.076 0.924
37 H 0.058 0.942
38 H 0.414 0.586
39 H 0.128 0.872
40 H 0.122 0.878
41 H 0.436 0.564
42 H 0.413 0.587
43 H 0.032 0.968
44 H 0.030 0.970
45 H 0.273 0.727
46 H 0.171 0.829
47 H 0.173 0.827
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.756 33.677 -13.794 37.014
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.079 3.921
3 C -0.206 4.206
4 C -0.222 4.222
5 N -0.360 5.360
6 C 0.350 3.650
7 O -0.451 6.451
8 C -0.166 4.166
9 C -0.070 4.070
10 C -0.167 4.167
11 C 0.065 3.935
12 N -0.279 5.279
13 C 0.301 3.699
14 O -0.388 6.388
15 C 0.280 3.720
16 O -0.427 6.427
17 N -0.321 5.321
18 C 0.106 3.894
19 C -0.595 4.595
20 H 0.071 0.929
21 C -0.175 4.175
22 N -0.570 5.570
23 Si 0.766 3.234
24 H -0.188 1.188
25 H -0.201 1.201
26 H -0.173 1.173
27 C -0.156 4.156
28 C -0.068 4.068
29 H 0.079 0.921
30 H 0.095 0.905
31 H 0.065 0.935
32 H 0.092 0.908
33 H 0.102 0.898
34 H 0.093 0.907
35 H 0.065 0.935
36 H 0.095 0.905
37 H 0.077 0.923
38 H 0.252 0.748
39 H 0.145 0.855
40 H 0.140 0.860
41 H 0.277 0.723
42 H 0.250 0.750
43 H 0.050 0.950
44 H 0.048 0.952
45 H 0.083 0.917
46 H 0.188 0.812
47 H 0.191 0.809
Dipole moment (debyes) X Y Z Total
from point charges -7.171 33.036 -14.245 36.684
hybrid contribution 0.258 -0.871 0.888 1.270
sum -6.913 32.166 -13.356 35.508
Atomic orbital electron populations
1.22200 0.94842 1.02300 1.02707 1.20490 0.94066 0.93260 0.84289
1.22060 1.02270 0.92076 1.04227 1.22209 1.01160 1.01259 0.97526
1.46004 1.53342 1.10895 1.25724 1.18312 0.79422 0.82230 0.85077
1.90722 1.39475 1.67278 1.47635 1.20020 1.04355 0.95026 0.97226
1.21067 0.96666 0.93614 0.95616 1.21083 0.98714 1.01095 0.95763
1.18167 0.94329 0.93279 0.87764 1.42988 1.62511 1.08375 1.14042
1.20174 0.77744 0.83292 0.88721 1.90797 1.49715 1.67521 1.30801
1.20014 0.79675 0.83469 0.88881 1.90718 1.53332 1.67557 1.31141
1.45976 1.64105 1.08180 1.13858 1.19392 0.95784 0.90725 0.83475
1.21264 1.48853 0.92749 0.96627 0.92887 1.25682 0.93488 0.94564
1.03797 1.69999 1.46592 1.04809 1.35600 0.85764 0.79088 0.79708
0.78793 1.18806 1.20062 1.17315 1.21209 1.02191 0.92283 0.99942
1.21422 0.93279 1.00795 0.91296 0.92067 0.90545 0.93454 0.90848
0.89835 0.90682 0.93490 0.90507 0.92259 0.74810 0.85455 0.85984
0.72314 0.75039 0.94968 0.95205 0.91750 0.81179 0.80943
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.16 8.40 71.98 0.60 -1.55 16
2 C 0.16 1.78 1.06 3.60 0.00 1.78 16
3 C -0.15 -0.60 8.59 71.98 0.62 0.02 16
4 C -0.16 -2.26 8.40 71.98 0.60 -1.66 16
5 N -0.71 -8.00 5.05 -425.97 -2.15 -10.15 16
6 C 0.56 10.81 7.18 86.72 0.62 11.43 16
7 O -0.57 -15.47 12.54 -3.99 -0.05 -15.52 16
8 C -0.16 -2.95 5.88 -20.07 -0.12 -3.06 16
9 C -0.05 -1.15 9.58 22.50 0.22 -0.93 16
10 C -0.15 -3.58 8.62 22.36 0.19 -3.39 16
11 C 0.16 3.27 6.27 38.41 0.24 3.51 16
12 N -0.63 -13.98 5.30 -304.80 -1.62 -15.59 16
13 C 0.52 15.55 7.61 87.24 0.66 16.21 16
14 O -0.51 -17.57 14.17 -3.28 -0.05 -17.62 16
15 C 0.50 17.74 7.89 87.24 0.69 18.43 16
16 O -0.55 -20.72 16.48 -3.28 -0.05 -20.77 16
17 N -0.67 -27.01 5.54 -468.23 -2.59 -29.61 16
18 C 0.23 10.66 4.50 85.63 0.38 11.04 16
19 C -0.56 -30.46 9.83 25.60 0.25 -30.21 16
20 H 0.05 3.14 7.84 -2.91 -0.02 3.11 16
21 C 0.03 1.40 5.47 84.65 0.46 1.86 16
22 N -0.93 -55.37 13.96 21.45 0.30 -55.07 16
23 Si 0.94 42.02 27.47 68.60 1.88 43.90 16
24 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16
25 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16
26 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16
27 C -0.14 -1.74 9.94 22.36 0.22 -1.51 16
28 C -0.05 -0.54 9.53 22.50 0.21 -0.32 16
29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16
30 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16
31 H 0.05 0.96 6.16 -2.39 -0.01 0.95 16
32 H 0.07 0.19 8.14 -2.38 -0.02 0.17 16
33 H 0.08 0.24 8.14 -2.38 -0.02 0.22 16
34 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16
35 H 0.05 0.99 6.16 -2.39 -0.01 0.97 16
36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16
37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16
38 H 0.41 1.83 6.49 -92.71 -0.60 1.23 16
39 H 0.13 3.14 7.64 -2.91 -0.02 3.12 16
40 H 0.12 3.46 6.43 -2.91 -0.02 3.44 16
41 H 0.44 7.62 8.29 -92.72 -0.77 6.85 16
42 H 0.41 16.24 7.79 -92.71 -0.72 15.51 16
43 H 0.03 1.52 7.20 -2.39 -0.02 1.50 16
44 H 0.03 1.39 7.57 -2.39 -0.02 1.38 16
45 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16
46 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16
47 H 0.17 0.34 6.39 -2.92 -0.02 0.32 16
Total: -1.00 -73.76 391.35 0.44 -73.32
By element:
Atomic # 1 Polarization: 26.58 SS G_CDS: -1.11 Total: 25.47 kcal
Atomic # 6 Polarization: 15.77 SS G_CDS: 5.87 Total: 21.64 kcal
Atomic # 7 Polarization: -104.36 SS G_CDS: -6.06 Total: -110.42 kcal
Atomic # 8 Polarization: -53.76 SS G_CDS: -0.15 Total: -53.91 kcal
Atomic # 14 Polarization: 42.02 SS G_CDS: 1.88 Total: 43.90 kcal
Total: -73.76 0.44 -73.32 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000427864125.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.756 kcal
(2) G-P(sol) polarization free energy of solvation -73.759 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.515 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.321 kcal
(6) G-S(sol) free energy of system = (1) + (5) -104.077 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds