Wall clock time and date at job start Wed Apr 1 2020 05:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47163 * 2 1 4 4 C 1.53000 * 109.47301 * 239.99391 * 2 1 3 5 5 N 1.46502 * 109.46802 * 119.99346 * 2 1 3 6 6 C 1.34778 * 119.99946 * 60.00598 * 5 2 1 7 7 O 1.21587 * 120.00017 * 359.97438 * 6 5 2 8 8 C 1.47607 * 120.00345 * 179.97438 * 6 5 2 9 9 C 1.39753 * 120.06923 * 179.97438 * 8 6 5 10 10 C 1.37654 * 119.92746 * 180.29657 * 9 8 6 11 11 C 1.39177 * 120.07218 * 359.45645 * 10 9 8 12 12 N 1.39279 * 119.93707 * 180.25157 * 11 10 9 13 13 C 1.34779 * 119.99396 * 33.75161 * 12 11 10 14 14 O 1.21360 * 120.00201 * 5.27645 * 13 12 11 15 15 C 1.49367 * 119.99539 * 185.27827 * 13 12 11 16 16 O 1.21359 * 119.99796 * 359.97438 * 15 13 12 17 17 N 1.34779 * 119.99539 * 179.97438 * 15 13 12 18 18 C 1.46496 * 119.99627 * 179.97438 * 17 15 13 19 19 C 1.50702 * 109.47339 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99739 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00225 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99918 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 120.00130 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47120 * 90.00246 * 23 21 19 25 25 H 1.48494 * 109.47654 * 210.00471 * 23 21 19 26 26 H 1.48501 * 109.47108 * 330.00803 * 23 21 19 27 27 C 1.39182 * 120.13554 * 0.54929 * 11 10 9 28 28 C 1.37665 * 120.06886 * 359.72871 * 27 11 10 29 29 H 1.08994 * 109.47034 * 300.00503 * 1 2 3 30 30 H 1.09008 * 109.46564 * 60.00681 * 1 2 3 31 31 H 1.08998 * 109.47352 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46959 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.46824 * 299.99159 * 3 2 1 34 34 H 1.08994 * 109.47556 * 59.99816 * 3 2 1 35 35 H 1.08998 * 109.47246 * 300.00467 * 4 2 1 36 36 H 1.09003 * 109.46671 * 60.00452 * 4 2 1 37 37 H 1.08995 * 109.47186 * 180.02562 * 4 2 1 38 38 H 0.97001 * 120.00055 * 239.99575 * 5 2 1 39 39 H 1.07998 * 120.03550 * 0.03169 * 9 8 6 40 40 H 1.08002 * 119.96748 * 179.70273 * 10 9 8 41 41 H 0.96990 * 120.00089 * 213.74984 * 12 11 10 42 42 H 0.96998 * 120.00154 * 359.97438 * 17 15 13 43 43 H 1.08997 * 109.47355 * 300.00046 * 18 17 15 44 44 H 1.09003 * 109.47406 * 59.99973 * 18 17 15 45 45 H 0.96999 * 120.00217 * 179.97438 * 22 21 19 46 46 H 1.07998 * 119.97008 * 179.70510 * 27 11 10 47 47 H 1.07989 * 120.03752 * 179.97438 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 2.0183 -0.6905 1.1963 6 6 1.6927 -1.9808 1.4096 7 8 0.9934 -2.5717 0.6095 8 6 2.1851 -2.6768 2.6146 9 6 1.8479 -4.0146 2.8375 10 6 2.3036 -4.6590 3.9653 11 6 3.1087 -3.9831 4.8774 12 7 3.5725 -4.6394 6.0149 13 6 3.8632 -5.9544 5.9627 14 8 3.8129 -6.5454 4.9039 15 6 4.2472 -6.6843 7.2080 16 8 4.2979 -6.0932 8.2666 17 7 4.5374 -7.9995 7.1558 18 6 4.9146 -8.7153 8.3770 19 6 5.1866 -10.1607 8.0485 20 1 5.0879 -10.5111 7.0317 21 6 5.5604 -11.0359 9.0461 22 7 5.7973 -12.2974 8.7593 23 14 5.7304 -10.4301 10.8048 24 1 4.4297 -10.5758 11.5065 25 1 6.7642 -11.2321 11.5070 26 1 6.1322 -9.0005 10.7992 27 6 3.4462 -2.6507 4.6584 28 6 2.9888 -1.9990 3.5353 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6767 -1.7490 -1.2491 36 1 1.6768 -0.2075 -2.1392 37 1 3.1300 -0.7218 -1.2489 38 1 2.5760 -0.2190 1.8347 39 1 1.2270 -4.5410 2.1278 40 1 2.0395 -5.6915 4.1406 41 1 3.6864 -4.1501 6.8446 42 1 4.4965 -8.4720 6.3096 43 1 5.8121 -8.2642 8.8001 44 1 4.1014 -8.6536 9.1003 45 1 6.0606 -12.9131 9.4611 46 1 4.0671 -2.1273 5.3703 47 1 3.2506 -0.9650 3.3660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427864125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:25 Heat of formation + Delta-G solvation = -104.077462 kcal Electronic energy + Delta-G solvation = -28955.381013 eV Core-core repulsion = 24716.188001 eV Total energy + Delta-G solvation = -4239.193012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.25810 -41.39063 -40.26582 -39.12493 -37.47805 -36.70323 -35.85135 -34.44090 -33.43066 -31.98775 -30.88302 -30.23132 -28.22418 -28.18885 -26.78029 -24.78049 -24.11256 -23.35659 -21.99096 -21.53438 -20.55858 -20.23496 -19.16137 -18.66597 -18.56661 -17.39974 -17.23758 -16.98465 -16.79620 -16.21208 -16.03865 -16.03236 -15.80987 -15.19992 -15.17036 -15.02854 -14.89569 -14.57788 -14.46592 -14.43508 -14.12691 -13.83120 -13.72405 -13.24505 -13.13879 -13.01854 -12.99218 -12.83892 -12.70215 -12.53881 -12.33469 -12.09873 -11.97084 -11.91904 -11.70932 -11.59962 -10.93773 -10.86351 -10.68530 -10.20502 -10.12582 -10.08232 -9.35189 -8.40102 -6.50059 -0.46066 0.31505 0.31885 1.16279 1.36710 1.38623 1.49809 1.76134 2.06696 2.14431 2.28600 2.58243 2.81672 2.94932 3.33263 3.65216 3.74009 3.86466 3.97266 4.01946 4.15139 4.20809 4.30540 4.37109 4.63871 4.71769 4.74055 4.78599 4.88400 4.92147 4.94326 4.95035 4.98620 5.02075 5.08948 5.13120 5.18413 5.22914 5.25469 5.28502 5.40472 5.41094 5.61861 5.71546 5.82885 6.03661 6.40340 6.51067 6.60497 6.64055 6.85804 7.16473 7.25384 8.74839 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.034998 B = 0.001614 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.850582 B =17340.602364 C =17814.400139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.164 3.836 3 C -0.149 4.149 4 C -0.163 4.163 5 N -0.706 5.706 6 C 0.561 3.439 7 O -0.570 6.570 8 C -0.162 4.162 9 C -0.050 4.050 10 C -0.146 4.146 11 C 0.159 3.841 12 N -0.632 5.632 13 C 0.519 3.481 14 O -0.514 6.514 15 C 0.500 3.500 16 O -0.548 6.548 17 N -0.671 5.671 18 C 0.229 3.771 19 C -0.557 4.557 20 H 0.053 0.947 21 C 0.025 3.975 22 N -0.932 5.932 23 Si 0.944 3.056 24 H -0.263 1.263 25 H -0.275 1.275 26 H -0.249 1.249 27 C -0.136 4.136 28 C -0.049 4.049 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.414 0.586 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.436 0.564 42 H 0.413 0.587 43 H 0.032 0.968 44 H 0.030 0.970 45 H 0.273 0.727 46 H 0.171 0.829 47 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.756 33.677 -13.794 37.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.079 3.921 3 C -0.206 4.206 4 C -0.222 4.222 5 N -0.360 5.360 6 C 0.350 3.650 7 O -0.451 6.451 8 C -0.166 4.166 9 C -0.070 4.070 10 C -0.167 4.167 11 C 0.065 3.935 12 N -0.279 5.279 13 C 0.301 3.699 14 O -0.388 6.388 15 C 0.280 3.720 16 O -0.427 6.427 17 N -0.321 5.321 18 C 0.106 3.894 19 C -0.595 4.595 20 H 0.071 0.929 21 C -0.175 4.175 22 N -0.570 5.570 23 Si 0.766 3.234 24 H -0.188 1.188 25 H -0.201 1.201 26 H -0.173 1.173 27 C -0.156 4.156 28 C -0.068 4.068 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.252 0.748 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.277 0.723 42 H 0.250 0.750 43 H 0.050 0.950 44 H 0.048 0.952 45 H 0.083 0.917 46 H 0.188 0.812 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.171 33.036 -14.245 36.684 hybrid contribution 0.258 -0.871 0.888 1.270 sum -6.913 32.166 -13.356 35.508 Atomic orbital electron populations 1.22200 0.94842 1.02300 1.02707 1.20490 0.94066 0.93260 0.84289 1.22060 1.02270 0.92076 1.04227 1.22209 1.01160 1.01259 0.97526 1.46004 1.53342 1.10895 1.25724 1.18312 0.79422 0.82230 0.85077 1.90722 1.39475 1.67278 1.47635 1.20020 1.04355 0.95026 0.97226 1.21067 0.96666 0.93614 0.95616 1.21083 0.98714 1.01095 0.95763 1.18167 0.94329 0.93279 0.87764 1.42988 1.62511 1.08375 1.14042 1.20174 0.77744 0.83292 0.88721 1.90797 1.49715 1.67521 1.30801 1.20014 0.79675 0.83469 0.88881 1.90718 1.53332 1.67557 1.31141 1.45976 1.64105 1.08180 1.13858 1.19392 0.95784 0.90725 0.83475 1.21264 1.48853 0.92749 0.96627 0.92887 1.25682 0.93488 0.94564 1.03797 1.69999 1.46592 1.04809 1.35600 0.85764 0.79088 0.79708 0.78793 1.18806 1.20062 1.17315 1.21209 1.02191 0.92283 0.99942 1.21422 0.93279 1.00795 0.91296 0.92067 0.90545 0.93454 0.90848 0.89835 0.90682 0.93490 0.90507 0.92259 0.74810 0.85455 0.85984 0.72314 0.75039 0.94968 0.95205 0.91750 0.81179 0.80943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 8.40 71.98 0.60 -1.55 16 2 C 0.16 1.78 1.06 3.60 0.00 1.78 16 3 C -0.15 -0.60 8.59 71.98 0.62 0.02 16 4 C -0.16 -2.26 8.40 71.98 0.60 -1.66 16 5 N -0.71 -8.00 5.05 -425.97 -2.15 -10.15 16 6 C 0.56 10.81 7.18 86.72 0.62 11.43 16 7 O -0.57 -15.47 12.54 -3.99 -0.05 -15.52 16 8 C -0.16 -2.95 5.88 -20.07 -0.12 -3.06 16 9 C -0.05 -1.15 9.58 22.50 0.22 -0.93 16 10 C -0.15 -3.58 8.62 22.36 0.19 -3.39 16 11 C 0.16 3.27 6.27 38.41 0.24 3.51 16 12 N -0.63 -13.98 5.30 -304.80 -1.62 -15.59 16 13 C 0.52 15.55 7.61 87.24 0.66 16.21 16 14 O -0.51 -17.57 14.17 -3.28 -0.05 -17.62 16 15 C 0.50 17.74 7.89 87.24 0.69 18.43 16 16 O -0.55 -20.72 16.48 -3.28 -0.05 -20.77 16 17 N -0.67 -27.01 5.54 -468.23 -2.59 -29.61 16 18 C 0.23 10.66 4.50 85.63 0.38 11.04 16 19 C -0.56 -30.46 9.83 25.60 0.25 -30.21 16 20 H 0.05 3.14 7.84 -2.91 -0.02 3.11 16 21 C 0.03 1.40 5.47 84.65 0.46 1.86 16 22 N -0.93 -55.37 13.96 21.45 0.30 -55.07 16 23 Si 0.94 42.02 27.47 68.60 1.88 43.90 16 24 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 25 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 26 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 27 C -0.14 -1.74 9.94 22.36 0.22 -1.51 16 28 C -0.05 -0.54 9.53 22.50 0.21 -0.32 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.05 0.96 6.16 -2.39 -0.01 0.95 16 32 H 0.07 0.19 8.14 -2.38 -0.02 0.17 16 33 H 0.08 0.24 8.14 -2.38 -0.02 0.22 16 34 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.05 0.99 6.16 -2.39 -0.01 0.97 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.41 1.83 6.49 -92.71 -0.60 1.23 16 39 H 0.13 3.14 7.64 -2.91 -0.02 3.12 16 40 H 0.12 3.46 6.43 -2.91 -0.02 3.44 16 41 H 0.44 7.62 8.29 -92.72 -0.77 6.85 16 42 H 0.41 16.24 7.79 -92.71 -0.72 15.51 16 43 H 0.03 1.52 7.20 -2.39 -0.02 1.50 16 44 H 0.03 1.39 7.57 -2.39 -0.02 1.38 16 45 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 46 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 47 H 0.17 0.34 6.39 -2.92 -0.02 0.32 16 Total: -1.00 -73.76 391.35 0.44 -73.32 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: -1.11 Total: 25.47 kcal Atomic # 6 Polarization: 15.77 SS G_CDS: 5.87 Total: 21.64 kcal Atomic # 7 Polarization: -104.36 SS G_CDS: -6.06 Total: -110.42 kcal Atomic # 8 Polarization: -53.76 SS G_CDS: -0.15 Total: -53.91 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.88 Total: 43.90 kcal Total: -73.76 0.44 -73.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427864125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.756 kcal (2) G-P(sol) polarization free energy of solvation -73.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds