Wall clock time and date at job start Wed Apr 1 2020 05:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 120.00253 * 2 1 4 4 C 1.53002 * 109.46750 * 275.00306 * 3 2 1 5 5 C 1.50706 * 109.47054 * 179.97438 * 4 3 2 6 6 O 1.20830 * 119.99724 * 359.97438 * 5 4 3 7 7 O 1.34220 * 120.00117 * 180.02562 * 5 4 3 8 8 C 1.45195 * 117.00220 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47088 * 59.99607 * 8 7 5 10 10 C 1.53001 * 109.47311 * 179.97438 * 8 7 5 11 11 C 1.52995 * 109.46964 * 299.99781 * 8 7 5 12 12 S 1.65603 * 119.99993 * 179.97438 * 2 1 3 13 13 O 1.42096 * 104.27959 * 153.92924 * 12 2 1 14 14 O 1.42102 * 104.27940 * 26.06849 * 12 2 1 15 15 C 1.81405 * 104.44925 * 270.00220 * 12 2 1 16 16 C 1.52995 * 109.47240 * 186.18214 * 15 12 2 17 17 C 1.50710 * 115.54667 * 295.94899 * 16 15 12 18 18 H 1.07999 * 119.99746 * 114.86300 * 17 16 15 19 19 C 1.37872 * 119.99825 * 295.13041 * 17 16 15 20 20 N 1.31511 * 120.00173 * 174.17534 * 19 17 16 21 21 Si 1.86805 * 120.00025 * 354.18549 * 19 17 16 22 22 H 1.48505 * 109.47123 * 89.27214 * 21 19 17 23 23 H 1.48500 * 109.46964 * 209.26866 * 21 19 17 24 24 H 1.48497 * 109.46977 * 329.27203 * 21 19 17 25 25 C 1.53005 * 117.50202 * 81.61256 * 16 15 12 26 26 C 1.53001 * 117.50166 * 150.27679 * 16 15 12 27 27 H 1.09006 * 109.46926 * 269.99948 * 1 2 3 28 28 H 1.08997 * 109.47064 * 30.00232 * 1 2 3 29 29 H 1.09004 * 109.46733 * 150.00400 * 1 2 3 30 30 H 1.09005 * 109.46662 * 34.99758 * 3 2 1 31 31 H 1.08994 * 109.47161 * 154.99915 * 3 2 1 32 32 H 1.08998 * 109.47053 * 299.99602 * 4 3 2 33 33 H 1.08993 * 109.47453 * 59.99350 * 4 3 2 34 34 H 1.09004 * 109.47408 * 60.00086 * 9 8 7 35 35 H 1.09004 * 109.47099 * 179.97438 * 9 8 7 36 36 H 1.09000 * 109.47539 * 300.00203 * 9 8 7 37 37 H 1.08999 * 109.47144 * 59.99927 * 10 8 7 38 38 H 1.09001 * 109.46767 * 179.97438 * 10 8 7 39 39 H 1.08991 * 109.47278 * 299.99927 * 10 8 7 40 40 H 1.09003 * 109.47291 * 59.99817 * 11 8 7 41 41 H 1.09005 * 109.47072 * 179.97438 * 11 8 7 42 42 H 1.09000 * 109.47264 * 299.99301 * 11 8 7 43 43 H 1.08999 * 109.47208 * 66.17645 * 15 12 2 44 44 H 1.09003 * 109.46777 * 306.17662 * 15 12 2 45 45 H 0.97002 * 120.00575 * 179.97438 * 20 19 17 46 46 H 1.08996 * 117.50015 * 215.00257 * 25 16 15 47 47 H 1.08996 * 117.49817 * 0.02796 * 25 16 15 48 48 H 1.08996 * 117.49607 * 359.97438 * 26 16 15 49 49 H 1.09005 * 117.49413 * 144.97215 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3436 1.7732 -1.4371 5 6 3.0967 3.0786 -1.4371 6 8 3.4770 3.5566 -0.3946 7 8 3.3439 3.7108 -2.5950 8 6 4.0736 4.9637 -2.5193 9 6 5.4438 4.7183 -1.8841 10 6 4.2593 5.5317 -3.9278 11 6 3.2873 5.9611 -1.6662 12 16 2.2930 -1.4342 0.0006 13 8 3.5395 -1.1195 -0.6047 14 8 1.3970 -2.3565 -0.6041 15 6 2.5193 -1.8254 1.7575 16 6 3.4118 -3.0605 1.8941 17 6 2.8460 -4.3372 1.3272 18 1 3.3249 -4.8123 0.4838 19 6 1.7139 -4.8954 1.8817 20 7 1.1540 -5.9437 1.3184 21 14 0.9749 -4.1627 3.4330 22 1 -0.0067 -3.1110 3.0647 23 1 0.2905 -5.2294 4.2069 24 1 2.0535 -3.5652 4.2605 25 6 4.9246 -2.8535 1.7959 26 6 4.2810 -3.1689 3.1486 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8901 -0.5138 30 1 1.6501 2.0043 0.5895 31 1 3.1858 1.1176 0.4343 32 1 2.8910 1.0376 -2.0265 33 1 1.3554 1.9241 -1.8714 34 1 6.0040 4.0077 -2.4919 35 1 5.9918 5.6589 -1.8277 36 1 5.3119 4.3135 -0.8808 37 1 3.2834 5.7065 -4.3806 38 1 4.8068 6.4726 -3.8708 39 1 4.8197 4.8211 -4.5352 40 1 3.1554 5.5562 -0.6628 41 1 3.8354 6.9016 -1.6090 42 1 2.3113 6.1360 -2.1187 43 1 1.5495 -2.0257 2.2130 44 1 2.9893 -0.9802 2.2603 45 1 0.3577 -6.3367 1.7087 46 1 5.5105 -3.6406 1.3213 47 1 5.2840 -1.8372 1.6344 48 1 4.2173 -2.3599 3.8763 49 1 4.4433 -4.1635 3.5640 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451324096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:26 Heat of formation + Delta-G solvation = -131.561206 kcal Electronic energy + Delta-G solvation = -30156.397239 eV Core-core repulsion = 26019.163643 eV Total energy + Delta-G solvation = -4137.233596 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.02460 -37.62438 -37.09746 -36.44536 -36.27876 -35.13975 -34.32987 -32.20794 -31.28605 -28.57936 -27.71170 -27.66597 -26.68918 -25.51655 -24.01116 -21.69301 -21.58915 -19.79354 -19.41594 -18.42259 -17.49876 -17.17550 -16.81184 -16.60564 -16.33969 -15.78033 -15.34929 -15.05966 -14.75340 -14.48323 -14.14410 -13.95192 -13.82866 -13.63997 -13.54506 -13.09525 -12.77856 -12.63095 -12.48542 -12.43227 -12.35504 -12.26941 -12.21533 -12.18703 -11.75840 -11.53487 -11.42566 -11.37118 -11.19326 -11.14139 -10.90169 -10.79095 -10.72652 -10.62267 -10.50277 -10.17366 -10.16496 -9.63684 -9.17894 -9.03184 -8.74199 -8.41646 -6.18004 -4.24187 0.85228 2.08614 2.44957 3.13590 3.21459 3.28695 3.35270 4.32347 4.39038 4.41827 4.46046 4.48053 4.61427 4.68389 4.76014 4.77341 4.82899 5.04198 5.17117 5.17404 5.24166 5.31183 5.36962 5.38561 5.44406 5.53029 5.54837 5.56518 5.59539 5.66895 5.69853 5.83558 5.91898 5.93466 5.95254 6.02256 6.02945 6.10191 6.24854 6.35741 6.47164 6.60032 6.69036 6.86280 7.08202 7.58500 7.66798 8.37708 8.86554 9.43317 10.93593 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.021081 B = 0.002855 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.874609 B = 9806.536945 C =10170.300784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.016 6.016 3 C 0.139 3.861 4 C -0.140 4.140 5 C 0.474 3.526 6 O -0.506 6.506 7 O -0.351 6.351 8 C 0.115 3.885 9 C -0.185 4.185 10 C -0.141 4.141 11 C -0.182 4.182 12 S 2.612 3.388 13 O -0.961 6.961 14 O -0.928 6.928 15 C -0.582 4.582 16 C 0.000 4.000 17 C -0.512 4.512 18 H 0.086 0.914 19 C 0.093 3.907 20 N -0.876 5.876 21 Si 0.857 3.143 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.247 1.247 25 C -0.178 4.178 26 C -0.178 4.178 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.118 0.882 44 H 0.109 0.891 45 H 0.268 0.732 46 H 0.093 0.907 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.535 23.027 -4.711 23.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.851 5.851 3 C 0.013 3.987 4 C -0.180 4.180 5 C 0.317 3.683 6 O -0.394 6.394 7 O -0.269 6.269 8 C 0.079 3.921 9 C -0.242 4.242 10 C -0.198 4.198 11 C -0.240 4.240 12 S 2.708 3.292 13 O -0.952 6.952 14 O -0.918 6.918 15 C -0.713 4.713 16 C -0.002 4.002 17 C -0.548 4.548 18 H 0.104 0.896 19 C -0.112 4.112 20 N -0.511 5.511 21 Si 0.684 3.316 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.170 1.170 25 C -0.216 4.216 26 C -0.217 4.217 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.136 0.864 33 H 0.126 0.874 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.136 0.864 44 H 0.127 0.873 45 H 0.078 0.922 46 H 0.112 0.888 47 H 0.099 0.901 48 H 0.089 0.911 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.728 22.601 -5.198 23.255 hybrid contribution -0.659 0.643 1.619 1.862 sum 1.069 23.243 -3.579 23.541 Atomic orbital electron populations 1.21596 0.78729 1.04163 1.02027 1.57985 1.15317 1.21524 1.90303 1.20902 0.97848 0.85945 0.94012 1.21956 1.01882 0.92338 1.01783 1.23506 0.77089 0.86077 0.81661 1.90572 1.49184 1.66336 1.33323 1.86564 1.68903 1.36259 1.35128 1.22193 0.91441 0.81295 0.97182 1.22505 0.95234 1.03017 1.03411 1.21851 1.02982 1.01010 0.93950 1.22489 1.00301 0.99074 1.02095 1.05170 0.73893 0.71981 0.78140 1.93503 1.44259 1.83166 1.74233 1.93591 1.64177 1.60416 1.73626 1.30328 1.09342 1.06873 1.24711 1.18837 0.88112 0.92599 1.00682 1.20354 1.11675 1.05339 1.17470 0.89595 1.24891 0.95675 0.94333 0.96349 1.69874 1.20188 1.22108 1.38903 0.87178 0.80131 0.79410 0.84911 1.20199 1.21243 1.17005 1.22970 0.96213 1.01206 1.01172 1.23072 1.06642 1.01366 0.90613 0.92854 0.91103 0.89278 0.89657 0.89119 0.86441 0.87350 0.91790 0.91134 0.89615 0.91516 0.90418 0.91345 0.89701 0.91119 0.92068 0.86363 0.87255 0.92219 0.88849 0.90062 0.91052 0.89024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 10.66 59.85 0.64 1.63 16 2 N -1.02 -14.93 3.12 -121.75 -0.38 -15.31 16 3 C 0.14 1.75 4.53 -4.04 -0.02 1.73 16 4 C -0.14 -1.62 6.13 -27.88 -0.17 -1.79 16 5 C 0.47 5.71 7.27 36.01 0.26 5.98 16 6 O -0.51 -6.72 11.48 -18.75 -0.22 -6.93 16 7 O -0.35 -3.99 9.89 -39.23 -0.39 -4.38 16 8 C 0.11 1.07 1.13 -90.62 -0.10 0.97 16 9 C -0.18 -1.73 8.37 37.16 0.31 -1.42 16 10 C -0.14 -0.97 8.85 37.16 0.33 -0.64 16 11 C -0.18 -1.55 8.37 37.16 0.31 -1.24 16 12 S 2.61 52.09 5.08 -107.50 -0.55 51.55 16 13 O -0.96 -20.06 16.75 -57.54 -0.96 -21.02 16 14 O -0.93 -22.23 16.20 -57.54 -0.93 -23.16 16 15 C -0.58 -11.66 5.67 37.16 0.21 -11.45 16 16 C 0.00 0.01 0.81 -155.65 -0.13 -0.12 16 17 C -0.51 -14.23 8.68 -34.44 -0.30 -14.53 16 18 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 19 C 0.09 2.65 5.47 -17.82 -0.10 2.55 16 20 N -0.88 -26.49 13.96 55.43 0.77 -25.72 16 21 Si 0.86 20.55 25.03 -169.99 -4.25 16.29 16 22 H -0.28 -6.27 6.85 56.52 0.39 -5.88 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.25 -5.49 5.84 56.52 0.33 -5.16 16 25 C -0.18 -3.66 9.96 -26.69 -0.27 -3.92 16 26 C -0.18 -3.66 8.12 -26.69 -0.22 -3.88 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 29 H 0.09 1.24 6.91 -51.93 -0.36 0.89 16 30 H 0.09 0.89 8.07 -51.93 -0.42 0.47 16 31 H 0.09 1.19 7.56 -51.93 -0.39 0.80 16 32 H 0.12 1.49 7.90 -51.93 -0.41 1.08 16 33 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.98 5.89 -51.93 -0.31 0.67 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.88 5.89 -51.93 -0.31 0.57 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.12 2.40 4.88 -51.92 -0.25 2.15 16 44 H 0.11 1.76 8.10 -51.92 -0.42 1.34 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 47 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 48 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 49 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 LS Contribution 400.80 15.07 6.04 6.04 Total: -1.00 -34.07 400.80 -8.53 -42.60 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -8.43 Total: 6.18 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 0.77 Total: -26.14 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.39 Total: -41.02 kcal Atomic # 8 Polarization: -52.99 SS G_CDS: -2.50 Total: -55.49 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.25 Total: 16.29 kcal Atomic # 16 Polarization: 52.09 SS G_CDS: -0.55 Total: 51.55 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.07 -8.53 -42.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451324096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.964 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds