Wall clock time and date at job start Wed Apr 1 2020 05:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 120.00253 * 2 1 4 4 C 1.53002 * 109.46750 * 275.00306 * 3 2 1 5 5 C 1.50706 * 109.47054 * 179.97438 * 4 3 2 6 6 O 1.20830 * 119.99724 * 359.97438 * 5 4 3 7 7 O 1.34220 * 120.00117 * 180.02562 * 5 4 3 8 8 C 1.45195 * 117.00220 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47088 * 59.99607 * 8 7 5 10 10 C 1.53001 * 109.47311 * 179.97438 * 8 7 5 11 11 C 1.52995 * 109.46964 * 299.99781 * 8 7 5 12 12 S 1.65603 * 119.99993 * 179.97438 * 2 1 3 13 13 O 1.42096 * 104.27959 * 153.92924 * 12 2 1 14 14 O 1.42102 * 104.27940 * 26.06849 * 12 2 1 15 15 C 1.81405 * 104.44925 * 270.00220 * 12 2 1 16 16 C 1.52995 * 109.47240 * 186.18214 * 15 12 2 17 17 C 1.50710 * 115.54667 * 295.94899 * 16 15 12 18 18 H 1.07999 * 119.99746 * 114.86300 * 17 16 15 19 19 C 1.37872 * 119.99825 * 295.13041 * 17 16 15 20 20 N 1.31511 * 120.00173 * 174.17534 * 19 17 16 21 21 Si 1.86805 * 120.00025 * 354.18549 * 19 17 16 22 22 H 1.48505 * 109.47123 * 89.27214 * 21 19 17 23 23 H 1.48500 * 109.46964 * 209.26866 * 21 19 17 24 24 H 1.48497 * 109.46977 * 329.27203 * 21 19 17 25 25 C 1.53005 * 117.50202 * 81.61256 * 16 15 12 26 26 C 1.53001 * 117.50166 * 150.27679 * 16 15 12 27 27 H 1.09006 * 109.46926 * 269.99948 * 1 2 3 28 28 H 1.08997 * 109.47064 * 30.00232 * 1 2 3 29 29 H 1.09004 * 109.46733 * 150.00400 * 1 2 3 30 30 H 1.09005 * 109.46662 * 34.99758 * 3 2 1 31 31 H 1.08994 * 109.47161 * 154.99915 * 3 2 1 32 32 H 1.08998 * 109.47053 * 299.99602 * 4 3 2 33 33 H 1.08993 * 109.47453 * 59.99350 * 4 3 2 34 34 H 1.09004 * 109.47408 * 60.00086 * 9 8 7 35 35 H 1.09004 * 109.47099 * 179.97438 * 9 8 7 36 36 H 1.09000 * 109.47539 * 300.00203 * 9 8 7 37 37 H 1.08999 * 109.47144 * 59.99927 * 10 8 7 38 38 H 1.09001 * 109.46767 * 179.97438 * 10 8 7 39 39 H 1.08991 * 109.47278 * 299.99927 * 10 8 7 40 40 H 1.09003 * 109.47291 * 59.99817 * 11 8 7 41 41 H 1.09005 * 109.47072 * 179.97438 * 11 8 7 42 42 H 1.09000 * 109.47264 * 299.99301 * 11 8 7 43 43 H 1.08999 * 109.47208 * 66.17645 * 15 12 2 44 44 H 1.09003 * 109.46777 * 306.17662 * 15 12 2 45 45 H 0.97002 * 120.00575 * 179.97438 * 20 19 17 46 46 H 1.08996 * 117.50015 * 215.00257 * 25 16 15 47 47 H 1.08996 * 117.49817 * 0.02796 * 25 16 15 48 48 H 1.08996 * 117.49607 * 359.97438 * 26 16 15 49 49 H 1.09005 * 117.49413 * 144.97215 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3436 1.7732 -1.4371 5 6 3.0967 3.0786 -1.4371 6 8 3.4770 3.5566 -0.3946 7 8 3.3439 3.7108 -2.5950 8 6 4.0736 4.9637 -2.5193 9 6 5.4438 4.7183 -1.8841 10 6 4.2593 5.5317 -3.9278 11 6 3.2873 5.9611 -1.6662 12 16 2.2930 -1.4342 0.0006 13 8 3.5395 -1.1195 -0.6047 14 8 1.3970 -2.3565 -0.6041 15 6 2.5193 -1.8254 1.7575 16 6 3.4118 -3.0605 1.8941 17 6 2.8460 -4.3372 1.3272 18 1 3.3249 -4.8123 0.4838 19 6 1.7139 -4.8954 1.8817 20 7 1.1540 -5.9437 1.3184 21 14 0.9749 -4.1627 3.4330 22 1 -0.0067 -3.1110 3.0647 23 1 0.2905 -5.2294 4.2069 24 1 2.0535 -3.5652 4.2605 25 6 4.9246 -2.8535 1.7959 26 6 4.2810 -3.1689 3.1486 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8901 -0.5138 30 1 1.6501 2.0043 0.5895 31 1 3.1858 1.1176 0.4343 32 1 2.8910 1.0376 -2.0265 33 1 1.3554 1.9241 -1.8714 34 1 6.0040 4.0077 -2.4919 35 1 5.9918 5.6589 -1.8277 36 1 5.3119 4.3135 -0.8808 37 1 3.2834 5.7065 -4.3806 38 1 4.8068 6.4726 -3.8708 39 1 4.8197 4.8211 -4.5352 40 1 3.1554 5.5562 -0.6628 41 1 3.8354 6.9016 -1.6090 42 1 2.3113 6.1360 -2.1187 43 1 1.5495 -2.0257 2.2130 44 1 2.9893 -0.9802 2.2603 45 1 0.3577 -6.3367 1.7087 46 1 5.5105 -3.6406 1.3213 47 1 5.2840 -1.8372 1.6344 48 1 4.2173 -2.3599 3.8763 49 1 4.4433 -4.1635 3.5640 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451324096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:25 Heat of formation + Delta-G solvation = -154.992366 kcal Electronic energy + Delta-G solvation = -30157.413290 eV Core-core repulsion = 26019.163643 eV Total energy + Delta-G solvation = -4138.249648 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.87958 -38.82195 -38.52929 -38.04126 -37.36111 -36.76229 -35.08071 -34.32739 -32.24997 -30.18492 -28.35433 -28.28495 -27.77013 -27.48704 -25.03449 -23.27249 -22.52197 -21.22603 -20.61041 -19.87345 -18.72126 -18.63586 -18.18694 -17.51056 -17.31758 -17.19436 -16.91580 -16.69786 -15.67387 -15.58114 -15.43301 -15.28695 -14.94718 -14.71593 -14.56360 -14.49699 -14.42756 -14.02937 -13.60574 -13.38186 -13.25374 -13.14410 -13.12261 -12.97696 -12.92685 -12.89711 -12.85082 -12.61954 -12.49634 -12.43147 -12.41551 -12.17733 -12.13287 -12.02537 -11.81517 -11.58496 -11.37754 -11.02457 -10.97010 -10.71701 -10.41808 -9.97879 -8.32400 -6.43992 -0.65981 1.18386 1.26388 1.36404 1.50044 1.57452 1.95419 2.33727 2.88178 2.94408 3.18399 3.31647 3.53822 3.69452 3.78055 3.80514 3.86563 3.87722 3.97497 4.02740 4.19562 4.30855 4.41989 4.46121 4.59305 4.60070 4.61182 4.62756 4.66448 4.78031 4.82810 4.88795 4.88878 4.89253 4.93631 4.96345 5.00473 5.04919 5.14060 5.19820 5.28201 5.31194 5.47322 5.53654 5.59101 5.61473 6.21657 6.65066 6.78973 7.27380 8.83991 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.021081 B = 0.002855 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.874609 B = 9806.536945 C =10170.300784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -1.004 6.004 3 C 0.134 3.866 4 C -0.142 4.142 5 C 0.475 3.525 6 O -0.519 6.519 7 O -0.359 6.359 8 C 0.103 3.897 9 C -0.183 4.183 10 C -0.138 4.138 11 C -0.178 4.178 12 S 2.614 3.386 13 O -0.981 6.981 14 O -0.983 6.983 15 C -0.581 4.581 16 C -0.034 4.034 17 C -0.516 4.516 18 H 0.030 0.970 19 C 0.031 3.969 20 N -0.936 5.936 21 Si 0.913 3.087 22 H -0.254 1.254 23 H -0.290 1.290 24 H -0.211 1.211 25 C -0.174 4.174 26 C -0.160 4.160 27 H 0.072 0.928 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.133 0.867 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.119 0.881 44 H 0.157 0.843 45 H 0.269 0.731 46 H 0.080 0.920 47 H 0.110 0.890 48 H 0.110 0.890 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.411 27.258 -2.815 27.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.842 5.842 3 C 0.009 3.991 4 C -0.181 4.181 5 C 0.319 3.681 6 O -0.409 6.409 7 O -0.277 6.277 8 C 0.067 3.933 9 C -0.240 4.240 10 C -0.195 4.195 11 C -0.235 4.235 12 S 2.711 3.289 13 O -0.971 6.971 14 O -0.973 6.973 15 C -0.712 4.712 16 C -0.036 4.036 17 C -0.553 4.553 18 H 0.048 0.952 19 C -0.169 4.169 20 N -0.573 5.573 21 Si 0.735 3.265 22 H -0.179 1.179 23 H -0.217 1.217 24 H -0.133 1.133 25 C -0.211 4.211 26 C -0.199 4.199 27 H 0.091 0.909 28 H 0.128 0.872 29 H 0.084 0.916 30 H 0.134 0.866 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.151 0.849 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.118 0.882 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.137 0.863 44 H 0.175 0.825 45 H 0.078 0.922 46 H 0.099 0.901 47 H 0.128 0.872 48 H 0.129 0.871 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.634 26.851 -3.323 27.105 hybrid contribution -0.522 -0.636 0.897 1.217 sum 1.113 26.215 -2.426 26.350 Atomic orbital electron populations 1.21877 0.77014 1.04962 1.03629 1.57506 1.16169 1.20447 1.90082 1.21141 0.97849 0.85176 0.94968 1.21953 1.03067 0.91792 1.01286 1.23504 0.76853 0.86101 0.81668 1.90572 1.49726 1.66814 1.33765 1.86557 1.69064 1.37242 1.34821 1.22538 0.91172 0.80718 0.98846 1.22492 0.95706 1.03903 1.01946 1.21881 1.03560 1.01739 0.92280 1.22448 1.00828 0.99501 1.00732 1.04742 0.73317 0.72519 0.78339 1.93467 1.45218 1.83572 1.74873 1.93531 1.65462 1.63160 1.75146 1.30231 1.09136 1.06977 1.24850 1.18756 0.89816 0.91704 1.03330 1.20470 1.11580 1.07369 1.15927 0.95207 1.25862 0.96193 0.94644 1.00158 1.70049 1.21308 1.24589 1.41377 0.86283 0.80574 0.79204 0.80478 1.17901 1.21653 1.13310 1.23066 0.94342 1.02444 1.01284 1.23147 1.03826 1.02392 0.90533 0.90904 0.87207 0.91627 0.86600 0.89735 0.88091 0.84860 0.92315 0.88979 0.91784 0.91070 0.88216 0.91692 0.91617 0.89199 0.91512 0.86255 0.82462 0.92234 0.90148 0.87225 0.87150 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.54 10.66 127.77 1.36 2.91 16 2 N -1.00 -27.32 3.12 -539.11 -1.68 -29.00 16 3 C 0.13 2.99 4.53 86.38 0.39 3.38 16 4 C -0.14 -3.03 6.13 29.85 0.18 -2.84 16 5 C 0.47 10.73 7.27 71.24 0.52 11.25 16 6 O -0.52 -12.96 11.48 21.95 0.25 -12.71 16 7 O -0.36 -7.68 9.89 -51.32 -0.51 -8.19 16 8 C 0.10 1.72 1.13 -10.79 -0.01 1.71 16 9 C -0.18 -3.18 8.37 71.98 0.60 -2.58 16 10 C -0.14 -1.58 8.85 71.98 0.64 -0.94 16 11 C -0.18 -2.63 8.37 71.98 0.60 -2.03 16 12 S 2.61 103.23 5.08 -56.49 -0.29 102.94 16 13 O -0.98 -41.01 16.75 -127.65 -2.14 -43.15 16 14 O -0.98 -48.89 16.20 -127.65 -2.07 -50.95 16 15 C -0.58 -21.72 5.67 71.98 0.41 -21.31 16 16 C -0.03 -1.51 0.81 -52.92 -0.04 -1.55 16 17 C -0.52 -29.82 8.68 25.60 0.22 -29.59 16 18 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 19 C 0.03 1.83 5.47 84.65 0.46 2.29 16 20 N -0.94 -59.55 13.96 21.45 0.30 -59.25 16 21 Si 0.91 41.42 25.03 68.60 1.72 43.14 16 22 H -0.25 -10.56 6.85 99.48 0.68 -9.88 16 23 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.21 -8.31 5.84 99.48 0.58 -7.73 16 25 C -0.17 -6.86 9.96 30.62 0.30 -6.56 16 26 C -0.16 -6.07 8.12 30.62 0.25 -5.82 16 27 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.11 1.57 8.07 -2.39 -0.02 1.55 16 29 H 0.06 1.80 6.91 -2.38 -0.02 1.78 16 30 H 0.12 1.93 8.07 -2.38 -0.02 1.91 16 31 H 0.08 2.01 7.56 -2.39 -0.02 1.99 16 32 H 0.10 2.53 7.90 -2.39 -0.02 2.51 16 33 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.09 1.14 8.14 -2.38 -0.02 1.13 16 36 H 0.06 1.41 5.89 -2.39 -0.01 1.39 16 37 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 1.25 5.89 -2.39 -0.01 1.24 16 41 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.12 4.45 4.88 -2.39 -0.01 4.44 16 44 H 0.16 4.27 8.10 -2.39 -0.02 4.25 16 45 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 46 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 47 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 48 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 49 H 0.08 3.28 8.14 -2.38 -0.02 3.26 16 Total: -1.00 -79.97 400.80 2.25 -77.73 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.77 Total: 31.12 kcal Atomic # 6 Polarization: -57.57 SS G_CDS: 5.89 Total: -51.68 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -1.38 Total: -88.25 kcal Atomic # 8 Polarization: -110.54 SS G_CDS: -4.46 Total: -115.00 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 1.72 Total: 43.14 kcal Atomic # 16 Polarization: 103.23 SS G_CDS: -0.29 Total: 102.94 kcal Total: -79.97 2.25 -77.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451324096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.266 kcal (2) G-P(sol) polarization free energy of solvation -79.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds