Wall clock time and date at job start Wed Apr 1 2020 04:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46828 * 2 1 4 4 C 1.53000 * 109.46828 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47058 * 304.99856 * 4 3 2 6 6 C 1.52999 * 109.47155 * 185.00071 * 4 3 2 7 7 N 1.46498 * 109.47311 * 64.99732 * 6 4 3 8 8 S 1.65597 * 120.00040 * 165.00095 * 7 6 4 9 9 O 1.42099 * 104.27717 * 181.06967 * 8 7 6 10 10 O 1.42094 * 104.27856 * 308.93290 * 8 7 6 11 11 C 1.81402 * 104.44866 * 65.00214 * 8 7 6 12 12 C 1.52999 * 109.47054 * 173.81130 * 11 8 7 13 13 C 1.50700 * 115.55038 * 65.19187 * 12 11 8 14 14 H 1.07999 * 120.00065 * 264.78188 * 13 12 11 15 15 C 1.37881 * 119.99713 * 84.78541 * 13 12 11 16 16 N 1.31519 * 120.00075 * 352.23682 * 15 13 12 17 17 Si 1.86795 * 119.99900 * 172.23051 * 15 13 12 18 18 H 1.48504 * 109.46887 * 90.00198 * 17 15 13 19 19 H 1.48506 * 109.47149 * 209.99954 * 17 15 13 20 20 H 1.48497 * 109.47231 * 330.00285 * 17 15 13 21 21 C 1.53005 * 117.49771 * 279.52282 * 12 11 8 22 22 C 1.52998 * 117.49938 * 210.86838 * 12 11 8 23 23 C 1.50705 * 109.47278 * 64.99787 * 4 3 2 24 24 O 1.20827 * 119.99762 * 119.99738 * 23 4 3 25 25 O 1.34227 * 120.00128 * 300.00204 * 23 4 3 26 26 C 1.45200 * 116.99962 * 179.97438 * 25 23 4 27 27 C 1.53001 * 109.46865 * 179.97438 * 26 25 23 28 28 H 1.08998 * 109.47270 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47088 * 300.00121 * 1 2 3 30 30 H 1.09001 * 109.46955 * 60.00422 * 1 2 3 31 31 H 1.08998 * 109.47325 * 240.00375 * 2 1 3 32 32 H 1.09001 * 109.46955 * 119.99578 * 2 1 3 33 33 H 1.08998 * 109.47385 * 60.00061 * 3 2 1 34 34 H 1.09001 * 109.47009 * 299.99545 * 3 2 1 35 35 H 1.09008 * 109.46737 * 304.99823 * 6 4 3 36 36 H 1.09001 * 109.47152 * 184.99843 * 6 4 3 37 37 H 0.97003 * 119.99895 * 344.73061 * 7 6 4 38 38 H 1.09000 * 109.46966 * 293.81256 * 11 8 7 39 39 H 1.09000 * 109.47064 * 53.81359 * 11 8 7 40 40 H 0.97001 * 119.99772 * 185.03269 * 16 15 13 41 41 H 1.08997 * 117.50094 * 0.02562 * 21 12 11 42 42 H 1.08999 * 117.49910 * 145.01954 * 21 12 11 43 43 H 1.09007 * 117.49793 * 214.98505 * 22 12 11 44 44 H 1.09002 * 117.50135 * 359.96977 * 22 12 11 45 45 H 1.08996 * 109.47059 * 299.99840 * 26 25 23 46 46 H 1.09000 * 109.47316 * 60.00177 * 26 25 23 47 47 H 1.09000 * 109.47103 * 180.02562 * 27 26 25 48 48 H 1.09003 * 109.47183 * 299.99441 * 27 26 25 49 49 H 1.09004 * 109.47295 * 59.99784 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9329 0.8533 0.8427 6 6 4.0799 2.8796 0.1264 7 7 3.6918 3.4232 1.4302 8 16 4.4090 4.8034 1.9986 9 8 3.8135 5.0087 3.2724 10 8 5.8018 4.5518 1.8730 11 6 3.8882 6.0955 0.8368 12 6 4.3643 7.4586 1.3431 13 6 5.8584 7.6498 1.3875 14 1 6.3991 7.4679 2.3046 15 6 6.5352 8.0570 0.2574 16 7 5.9058 8.1314 -0.8950 17 14 8.3460 8.5033 0.3631 18 1 9.1694 7.2920 0.1178 19 1 8.6627 9.5326 -0.6594 20 1 8.6455 9.0399 1.7150 21 6 3.5325 8.1371 2.4334 22 6 3.5058 8.6782 1.0018 23 6 4.0729 0.8419 -1.2868 24 8 4.7678 1.4961 -2.0277 25 8 3.7488 -0.4198 -1.6103 26 6 4.2680 -0.9326 -2.8656 27 6 3.7971 -2.3752 -3.0610 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.6456 3.4898 -0.6656 36 1 5.1663 2.8887 0.0378 37 1 3.0118 2.9769 1.9588 38 1 4.3233 5.8997 -0.1432 39 1 2.8011 6.0967 0.7581 40 1 6.3973 8.3469 -1.7030 41 1 2.6464 7.6122 2.7903 42 1 4.0659 8.7221 3.1826 43 1 4.0218 9.6190 0.8096 44 1 2.6021 8.5096 0.4162 45 1 3.9042 -0.3167 -3.6880 46 1 5.3575 -0.9060 -2.8461 47 1 4.1873 -2.7603 -4.0031 48 1 4.1614 -2.9909 -2.2386 49 1 2.7076 -2.4023 -3.0803 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451479211.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:41 Heat of formation + Delta-G solvation = -156.399696 kcal Electronic energy + Delta-G solvation = -29797.226389 eV Core-core repulsion = 25658.915715 eV Total energy + Delta-G solvation = -4138.310674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.87341 -37.46822 -36.73606 -36.53386 -36.22148 -35.08546 -34.27045 -32.05215 -32.01307 -30.71047 -28.14647 -26.19552 -25.42730 -24.59180 -22.76732 -21.72214 -21.19824 -20.46310 -19.74215 -18.77189 -17.87353 -17.21694 -17.01971 -16.42570 -16.29612 -15.64209 -15.20610 -14.99918 -14.76961 -14.64716 -14.25743 -14.00279 -13.84285 -13.73975 -13.20930 -13.18913 -13.11311 -12.93556 -12.52796 -12.23312 -12.08128 -11.92534 -11.81856 -11.73621 -11.44688 -11.28360 -11.25465 -11.13386 -10.99316 -10.94933 -10.90840 -10.83615 -10.57378 -10.55314 -10.44836 -10.43602 -10.10303 -9.72172 -9.25789 -8.93324 -8.53384 -8.07699 -6.10980 -4.21573 1.05696 2.05267 2.39207 3.33646 3.39567 3.43962 3.46997 4.25881 4.40319 4.42264 4.46902 4.60419 4.63479 4.68847 4.82845 4.95926 4.98688 5.01806 5.06838 5.17090 5.22992 5.29132 5.34362 5.44106 5.45566 5.51517 5.61265 5.62214 5.64245 5.74089 5.81360 5.88491 5.97890 6.00717 6.11727 6.14248 6.28077 6.28267 6.38854 6.63195 6.73569 7.00161 7.19037 7.28244 7.40727 7.58757 7.83432 8.22814 8.83718 9.49695 10.96619 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012849 B = 0.003150 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.660477 B = 8886.539172 C =10123.224177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.136 4.136 3 C -0.115 4.115 4 C -0.087 4.087 5 H 0.118 0.882 6 C 0.131 3.869 7 N -1.133 6.133 8 S 2.608 3.392 9 O -0.973 6.973 10 O -0.948 6.948 11 C -0.554 4.554 12 C 0.044 3.956 13 C -0.518 4.518 14 H 0.068 0.932 15 C 0.082 3.918 16 N -0.873 5.873 17 Si 0.891 3.109 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.270 1.270 21 C -0.208 4.208 22 C -0.141 4.141 23 C 0.469 3.531 24 O -0.497 6.497 25 O -0.352 6.352 26 C 0.056 3.944 27 C -0.151 4.151 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.408 0.592 38 H 0.134 0.866 39 H 0.099 0.901 40 H 0.263 0.737 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.066 0.934 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.481 -19.239 -3.182 22.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.173 4.173 3 C -0.153 4.153 4 C -0.108 4.108 5 H 0.136 0.864 6 C 0.004 3.996 7 N -0.890 5.890 8 S 2.705 3.295 9 O -0.963 6.963 10 O -0.938 6.938 11 C -0.687 4.687 12 C 0.041 3.959 13 C -0.555 4.555 14 H 0.086 0.914 15 C -0.123 4.123 16 N -0.509 5.509 17 Si 0.718 3.282 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.195 1.195 21 C -0.245 4.245 22 C -0.180 4.180 23 C 0.310 3.690 24 O -0.383 6.383 25 O -0.269 6.269 26 C -0.017 4.017 27 C -0.208 4.208 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.242 0.758 38 H 0.153 0.847 39 H 0.118 0.882 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.097 0.903 48 H 0.085 0.915 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.530 -18.856 -2.974 21.336 hybrid contribution 0.355 0.219 -0.739 0.849 sum -9.175 -18.637 -3.713 21.103 Atomic orbital electron populations 1.21759 0.95793 1.01534 1.01812 1.21797 0.95849 0.95980 1.03685 1.21685 0.91207 0.98457 1.03933 1.21342 0.98258 0.97233 0.93945 0.86402 1.21056 1.01858 0.91712 0.84991 1.56053 1.57846 1.45679 1.29452 1.05153 0.74545 0.74248 0.75568 1.93508 1.78823 1.85506 1.38479 1.93540 1.30524 1.83055 1.86643 1.29979 1.07868 1.14285 1.16564 1.18270 0.93344 0.86730 0.97506 1.20517 0.89167 1.47950 0.97830 0.91359 1.24951 0.98402 0.93736 0.95187 1.69974 1.35939 1.46690 0.98260 0.86584 0.84960 0.78538 0.78128 1.20006 1.21087 1.19451 1.23195 1.02165 1.06444 0.92734 1.22549 1.00250 0.99742 0.95492 1.23512 0.77562 0.79937 0.87958 1.90739 1.34880 1.61296 1.51363 1.86555 1.69364 1.30053 1.40934 1.23060 0.99360 0.95428 0.83884 1.21803 1.02584 0.93785 1.02676 0.92802 0.92728 0.92851 0.89809 0.91706 0.89814 0.90873 0.90668 0.88840 0.75826 0.84747 0.88200 0.92712 0.90684 0.89542 0.89596 0.91544 0.91138 0.91118 0.90325 0.91482 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.67 16 2 C -0.14 -1.02 5.57 -26.73 -0.15 -1.17 16 3 C -0.12 -0.99 4.60 -26.73 -0.12 -1.11 16 4 C -0.09 -0.93 2.43 -91.77 -0.22 -1.15 16 5 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 6 C 0.13 1.80 4.87 -4.04 -0.02 1.78 16 7 N -1.13 -16.14 5.74 -10.61 -0.06 -16.20 16 8 S 2.61 52.01 5.19 -107.50 -0.56 51.45 16 9 O -0.97 -20.88 18.08 -57.54 -1.04 -21.92 16 10 O -0.95 -22.66 17.16 -57.54 -0.99 -23.65 16 11 C -0.55 -11.58 5.93 37.16 0.22 -11.36 16 12 C 0.04 1.07 1.32 -155.66 -0.21 0.87 16 13 C -0.52 -14.29 8.18 -34.44 -0.28 -14.57 16 14 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 15 C 0.08 2.28 5.38 -17.82 -0.10 2.18 16 16 N -0.87 -24.31 12.98 55.43 0.72 -23.59 16 17 Si 0.89 21.70 29.55 -169.99 -5.02 16.68 16 18 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 C -0.21 -4.57 9.96 -26.69 -0.27 -4.84 16 22 C -0.14 -3.22 9.49 -26.70 -0.25 -3.48 16 23 C 0.47 5.67 7.23 36.01 0.26 5.93 16 24 O -0.50 -7.71 15.67 -18.75 -0.29 -8.00 16 25 O -0.35 -3.50 7.36 -39.25 -0.29 -3.79 16 26 C 0.06 0.47 6.19 37.16 0.23 0.70 16 27 C -0.15 -0.84 10.29 37.16 0.38 -0.46 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.67 5.46 -51.93 -0.28 0.39 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.65 6.78 -51.93 -0.35 0.29 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.01 8.14 -51.92 -0.42 0.58 16 36 H 0.09 1.49 7.51 -51.93 -0.39 1.10 16 37 H 0.41 4.60 7.34 -34.47 -0.25 4.35 16 38 H 0.13 2.96 8.14 -51.92 -0.42 2.53 16 39 H 0.10 1.74 8.09 -51.92 -0.42 1.32 16 40 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 41 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 43 H 0.09 2.07 8.14 -51.92 -0.42 1.65 16 44 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 46 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 47 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 414.14 15.07 6.24 6.24 Total: -1.00 -34.32 414.14 -9.88 -44.20 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -8.43 Total: 5.94 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: -0.16 Total: -27.34 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.66 Total: -39.80 kcal Atomic # 8 Polarization: -54.76 SS G_CDS: -2.61 Total: -57.37 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 52.01 SS G_CDS: -0.56 Total: 51.45 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.32 -9.88 -44.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451479211.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.202 kcal (2) G-P(sol) polarization free energy of solvation -34.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds