Wall clock time and date at job start Wed Apr 1 2020 04:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46828 * 2 1 4 4 C 1.53000 * 109.46828 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47058 * 304.99856 * 4 3 2 6 6 C 1.52999 * 109.47155 * 185.00071 * 4 3 2 7 7 N 1.46498 * 109.47311 * 64.99732 * 6 4 3 8 8 S 1.65597 * 120.00040 * 165.00095 * 7 6 4 9 9 O 1.42099 * 104.27717 * 181.06967 * 8 7 6 10 10 O 1.42094 * 104.27856 * 308.93290 * 8 7 6 11 11 C 1.81402 * 104.44866 * 65.00214 * 8 7 6 12 12 C 1.52999 * 109.47054 * 173.81130 * 11 8 7 13 13 C 1.50700 * 115.55038 * 65.19187 * 12 11 8 14 14 H 1.07999 * 120.00065 * 264.78188 * 13 12 11 15 15 C 1.37881 * 119.99713 * 84.78541 * 13 12 11 16 16 N 1.31519 * 120.00075 * 352.23682 * 15 13 12 17 17 Si 1.86795 * 119.99900 * 172.23051 * 15 13 12 18 18 H 1.48504 * 109.46887 * 90.00198 * 17 15 13 19 19 H 1.48506 * 109.47149 * 209.99954 * 17 15 13 20 20 H 1.48497 * 109.47231 * 330.00285 * 17 15 13 21 21 C 1.53005 * 117.49771 * 279.52282 * 12 11 8 22 22 C 1.52998 * 117.49938 * 210.86838 * 12 11 8 23 23 C 1.50705 * 109.47278 * 64.99787 * 4 3 2 24 24 O 1.20827 * 119.99762 * 119.99738 * 23 4 3 25 25 O 1.34227 * 120.00128 * 300.00204 * 23 4 3 26 26 C 1.45200 * 116.99962 * 179.97438 * 25 23 4 27 27 C 1.53001 * 109.46865 * 179.97438 * 26 25 23 28 28 H 1.08998 * 109.47270 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47088 * 300.00121 * 1 2 3 30 30 H 1.09001 * 109.46955 * 60.00422 * 1 2 3 31 31 H 1.08998 * 109.47325 * 240.00375 * 2 1 3 32 32 H 1.09001 * 109.46955 * 119.99578 * 2 1 3 33 33 H 1.08998 * 109.47385 * 60.00061 * 3 2 1 34 34 H 1.09001 * 109.47009 * 299.99545 * 3 2 1 35 35 H 1.09008 * 109.46737 * 304.99823 * 6 4 3 36 36 H 1.09001 * 109.47152 * 184.99843 * 6 4 3 37 37 H 0.97003 * 119.99895 * 344.73061 * 7 6 4 38 38 H 1.09000 * 109.46966 * 293.81256 * 11 8 7 39 39 H 1.09000 * 109.47064 * 53.81359 * 11 8 7 40 40 H 0.97001 * 119.99772 * 185.03269 * 16 15 13 41 41 H 1.08997 * 117.50094 * 0.02562 * 21 12 11 42 42 H 1.08999 * 117.49910 * 145.01954 * 21 12 11 43 43 H 1.09007 * 117.49793 * 214.98505 * 22 12 11 44 44 H 1.09002 * 117.50135 * 359.96977 * 22 12 11 45 45 H 1.08996 * 109.47059 * 299.99840 * 26 25 23 46 46 H 1.09000 * 109.47316 * 60.00177 * 26 25 23 47 47 H 1.09000 * 109.47103 * 180.02562 * 27 26 25 48 48 H 1.09003 * 109.47183 * 299.99441 * 27 26 25 49 49 H 1.09004 * 109.47295 * 59.99784 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9329 0.8533 0.8427 6 6 4.0799 2.8796 0.1264 7 7 3.6918 3.4232 1.4302 8 16 4.4090 4.8034 1.9986 9 8 3.8135 5.0087 3.2724 10 8 5.8018 4.5518 1.8730 11 6 3.8882 6.0955 0.8368 12 6 4.3643 7.4586 1.3431 13 6 5.8584 7.6498 1.3875 14 1 6.3991 7.4679 2.3046 15 6 6.5352 8.0570 0.2574 16 7 5.9058 8.1314 -0.8950 17 14 8.3460 8.5033 0.3631 18 1 9.1694 7.2920 0.1178 19 1 8.6627 9.5326 -0.6594 20 1 8.6455 9.0399 1.7150 21 6 3.5325 8.1371 2.4334 22 6 3.5058 8.6782 1.0018 23 6 4.0729 0.8419 -1.2868 24 8 4.7678 1.4961 -2.0277 25 8 3.7488 -0.4198 -1.6103 26 6 4.2680 -0.9326 -2.8656 27 6 3.7971 -2.3752 -3.0610 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.6456 3.4898 -0.6656 36 1 5.1663 2.8887 0.0378 37 1 3.0118 2.9769 1.9588 38 1 4.3233 5.8997 -0.1432 39 1 2.8011 6.0967 0.7581 40 1 6.3973 8.3469 -1.7030 41 1 2.6464 7.6122 2.7903 42 1 4.0659 8.7221 3.1826 43 1 4.0218 9.6190 0.8096 44 1 2.6021 8.5096 0.4162 45 1 3.9042 -0.3167 -3.6880 46 1 5.3575 -0.9060 -2.8461 47 1 4.1873 -2.7603 -4.0031 48 1 4.1614 -2.9909 -2.2386 49 1 2.7076 -2.4023 -3.0803 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451479211.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:40 Heat of formation + Delta-G solvation = -178.614723 kcal Electronic energy + Delta-G solvation = -29798.189705 eV Core-core repulsion = 25658.915715 eV Total energy + Delta-G solvation = -4139.273990 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.80346 -38.55999 -38.38915 -37.91069 -37.48052 -36.79349 -35.20193 -34.08355 -32.68191 -31.56305 -29.84146 -27.49098 -27.01428 -25.43568 -23.52056 -22.97715 -22.37958 -21.54656 -21.31217 -20.32476 -18.91262 -18.50315 -18.31963 -17.98929 -17.27577 -17.01537 -16.76515 -16.67750 -15.90600 -15.85993 -15.46694 -15.37607 -14.93729 -14.80351 -14.70736 -14.00402 -13.92667 -13.74453 -13.64793 -13.59635 -13.22340 -13.12115 -13.00783 -12.92822 -12.90360 -12.87570 -12.86892 -12.60059 -12.44565 -12.42723 -12.20745 -11.94400 -11.88607 -11.64570 -11.62815 -11.52438 -11.44504 -11.19120 -10.86922 -10.59660 -10.53048 -9.87031 -8.19705 -6.34007 -0.53399 1.10303 1.37019 1.40269 1.48100 1.51565 2.08590 2.39106 2.92664 3.07753 3.33231 3.39106 3.45562 3.65073 3.75738 3.96671 4.02229 4.09027 4.10479 4.27870 4.31285 4.33327 4.38061 4.48280 4.54366 4.56171 4.61494 4.74296 4.81944 4.84645 4.86797 4.95197 4.96132 4.99783 5.02756 5.08699 5.15956 5.23053 5.34895 5.42450 5.46166 5.48813 5.60565 5.62659 5.71701 6.15163 6.22955 6.66640 6.72278 7.38276 8.87007 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012849 B = 0.003150 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.660477 B = 8886.539172 C =10123.224177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C -0.113 4.113 4 C -0.081 4.081 5 H 0.138 0.862 6 C 0.126 3.874 7 N -1.109 6.109 8 S 2.627 3.373 9 O -0.987 6.987 10 O -0.994 6.994 11 C -0.554 4.554 12 C 0.009 3.991 13 C -0.535 4.535 14 H 0.049 0.951 15 C 0.042 3.958 16 N -0.892 5.892 17 Si 0.934 3.066 18 H -0.279 1.279 19 H -0.273 1.273 20 H -0.267 1.267 21 C -0.193 4.193 22 C -0.139 4.139 23 C 0.471 3.529 24 O -0.539 6.539 25 O -0.342 6.342 26 C 0.047 3.953 27 C -0.144 4.144 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.426 0.574 38 H 0.119 0.881 39 H 0.138 0.862 40 H 0.264 0.736 41 H 0.102 0.898 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.095 0.905 48 H 0.070 0.930 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.394 -20.800 -2.930 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C -0.151 4.151 4 C -0.101 4.101 5 H 0.155 0.845 6 C -0.001 4.001 7 N -0.871 5.871 8 S 2.724 3.276 9 O -0.977 6.977 10 O -0.984 6.984 11 C -0.687 4.687 12 C 0.007 3.993 13 C -0.573 4.573 14 H 0.068 0.932 15 C -0.161 4.161 16 N -0.528 5.528 17 Si 0.759 3.241 18 H -0.205 1.205 19 H -0.198 1.198 20 H -0.191 1.191 21 C -0.231 4.231 22 C -0.178 4.178 23 C 0.315 3.685 24 O -0.428 6.428 25 O -0.259 6.259 26 C -0.026 4.026 27 C -0.201 4.201 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.264 0.736 38 H 0.137 0.863 39 H 0.156 0.844 40 H 0.074 0.926 41 H 0.120 0.880 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.114 0.886 48 H 0.089 0.911 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.468 -20.428 -2.699 23.582 hybrid contribution 0.920 0.632 -0.828 1.390 sum -10.548 -19.795 -3.528 22.706 Atomic orbital electron populations 1.21751 0.95109 1.02062 1.01898 1.21762 0.96369 0.95025 1.03811 1.21739 0.89226 0.99570 1.04560 1.21328 0.99763 0.95115 0.93922 0.84468 1.21095 1.00534 0.94101 0.84385 1.55396 1.57872 1.43941 1.29891 1.04262 0.73612 0.74721 0.75001 1.93477 1.78778 1.86127 1.39363 1.93487 1.33766 1.83951 1.87185 1.29882 1.10185 1.12880 1.15704 1.18397 0.92158 0.88785 0.99934 1.20729 0.91412 1.47981 0.97146 0.93235 1.25526 1.01465 0.93970 0.95168 1.70021 1.36882 1.47419 0.98447 0.85922 0.81445 0.78300 0.78445 1.20499 1.19822 1.19147 1.23249 1.02301 1.05436 0.92081 1.22510 1.00496 0.98239 0.96599 1.23788 0.76580 0.80252 0.87885 1.90729 1.36884 1.62408 1.52802 1.86570 1.68877 1.28818 1.41627 1.23314 0.99122 0.97103 0.83062 1.21805 1.03002 0.91563 1.03686 0.92110 0.92336 0.93087 0.90411 0.90861 0.88392 0.91059 0.90319 0.91516 0.73586 0.86257 0.84397 0.92637 0.87969 0.89965 0.91682 0.89325 0.91491 0.91840 0.88634 0.91137 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 71.98 0.71 -0.94 16 2 C -0.13 -1.64 5.57 30.60 0.17 -1.47 16 3 C -0.11 -1.66 4.60 30.60 0.14 -1.52 16 4 C -0.08 -1.60 2.43 -11.54 -0.03 -1.62 16 5 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 6 C 0.13 3.39 4.87 86.38 0.42 3.81 16 7 N -1.11 -29.85 5.74 -187.49 -1.08 -30.93 16 8 S 2.63 103.13 5.19 -56.49 -0.29 102.84 16 9 O -0.99 -40.92 18.08 -127.65 -2.31 -43.23 16 10 O -0.99 -48.45 17.16 -127.65 -2.19 -50.64 16 11 C -0.55 -22.66 5.93 71.98 0.43 -22.23 16 12 C 0.01 0.46 1.32 -52.93 -0.07 0.39 16 13 C -0.54 -30.04 8.18 25.60 0.21 -29.83 16 14 H 0.05 2.88 7.83 -2.91 -0.02 2.85 16 15 C 0.04 2.33 5.38 84.65 0.46 2.78 16 16 N -0.89 -50.17 12.98 21.45 0.28 -49.89 16 17 Si 0.93 45.00 29.55 68.60 2.03 47.03 16 18 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 19 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 20 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 21 C -0.19 -8.21 9.96 30.62 0.30 -7.91 16 22 C -0.14 -6.23 9.49 30.62 0.29 -5.94 16 23 C 0.47 11.15 7.23 71.24 0.52 11.67 16 24 O -0.54 -17.07 15.67 21.96 0.34 -16.73 16 25 O -0.34 -6.43 7.36 -51.38 -0.38 -6.81 16 26 C 0.05 0.76 6.19 71.98 0.45 1.21 16 27 C -0.14 -1.33 10.29 71.98 0.74 -0.59 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.08 1.07 5.46 -2.39 -0.01 1.06 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 1.17 6.78 -2.39 -0.02 1.16 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.07 2.19 7.51 -2.39 -0.02 2.18 16 37 H 0.43 8.42 7.34 -96.74 -0.71 7.71 16 38 H 0.12 5.27 8.14 -2.39 -0.02 5.25 16 39 H 0.14 4.43 8.09 -2.39 -0.02 4.41 16 40 H 0.26 14.22 8.32 -92.71 -0.77 13.45 16 41 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 42 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 43 H 0.06 3.14 8.14 -2.38 -0.02 3.12 16 44 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 45 H 0.07 1.12 8.13 -2.39 -0.02 1.10 16 46 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 47 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 Total: -1.00 -74.87 414.14 1.36 -73.51 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.22 Total: 27.06 kcal Atomic # 6 Polarization: -56.94 SS G_CDS: 4.74 Total: -52.20 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -0.80 Total: -80.82 kcal Atomic # 8 Polarization: -112.88 SS G_CDS: -4.53 Total: -117.41 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 103.13 SS G_CDS: -0.29 Total: 102.84 kcal Total: -74.87 1.36 -73.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451479211.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.107 kcal (2) G-P(sol) polarization free energy of solvation -74.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds