Wall clock time and date at job start Wed Apr 1 2020 05:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47260 * 2 1 4 4 C 1.50698 * 109.47036 * 239.99945 * 2 1 3 5 5 H 1.07998 * 120.00563 * 241.34390 * 4 2 1 6 6 C 1.37884 * 119.99917 * 61.35155 * 4 2 1 7 7 N 1.31516 * 119.99994 * 193.98027 * 6 4 2 8 8 Si 1.86803 * 119.99898 * 13.97066 * 6 4 2 9 9 H 1.48497 * 109.46830 * 84.55452 * 8 6 4 10 10 H 1.48497 * 109.46910 * 204.55436 * 8 6 4 11 11 H 1.48502 * 109.47334 * 324.55144 * 8 6 4 12 12 C 1.52996 * 109.47303 * 120.00019 * 2 1 3 13 13 N 1.46502 * 109.47331 * 300.00377 * 12 2 1 14 14 C 1.34771 * 120.00170 * 180.02562 * 13 12 2 15 15 O 1.21592 * 119.99773 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00153 * 179.97438 * 14 13 12 17 17 C 1.46505 * 120.00001 * 179.97438 * 16 14 13 18 18 C 1.52995 * 109.46749 * 180.02562 * 17 16 14 19 19 N 1.46503 * 109.47116 * 180.02562 * 18 17 16 20 20 C 1.39466 * 126.25461 * 270.17647 * 19 18 17 21 21 C 1.38602 * 133.36566 * 359.95379 * 20 19 18 22 22 C 1.38126 * 119.82702 * 180.38205 * 21 20 19 23 23 C 1.38416 * 120.18563 * 359.96127 * 22 21 20 24 24 C 1.38122 * 120.31022 * 0.04062 * 23 22 21 25 25 C 1.38612 * 119.91680 * 359.97438 * 24 23 22 26 26 O 1.35560 * 132.99459 * 179.97438 * 25 24 23 27 27 C 1.34224 * 109.17765 * 180.02562 * 26 25 24 28 28 O 1.21601 * 125.27575 * 180.02562 * 27 26 25 29 29 H 1.08994 * 109.47081 * 309.36538 * 1 2 3 30 30 H 1.09000 * 109.47075 * 69.36386 * 1 2 3 31 31 H 1.09000 * 109.46670 * 189.36622 * 1 2 3 32 32 H 1.08996 * 109.47615 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46873 * 300.00508 * 3 2 1 34 34 H 1.09002 * 109.47017 * 60.00292 * 3 2 1 35 35 H 0.97004 * 119.99578 * 180.02562 * 7 6 4 36 36 H 1.08999 * 109.47089 * 179.97438 * 12 2 1 37 37 H 1.09007 * 109.47137 * 60.00076 * 12 2 1 38 38 H 0.97004 * 119.99556 * 359.97438 * 13 12 2 39 39 H 0.96996 * 119.99703 * 0.02562 * 16 14 13 40 40 H 1.08999 * 109.46777 * 60.00531 * 17 16 14 41 41 H 1.09004 * 109.47048 * 300.00358 * 17 16 14 42 42 H 1.08999 * 109.47319 * 60.00531 * 18 17 16 43 43 H 1.09004 * 109.47367 * 299.99830 * 18 17 16 44 44 H 1.07996 * 120.08582 * 0.38466 * 21 20 19 45 45 H 1.08001 * 119.91197 * 179.97438 * 22 21 20 46 46 H 1.07995 * 119.84447 * 180.02562 * 23 22 21 47 47 H 1.07995 * 120.04226 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6352 -1.6010 -1.1316 6 6 1.7224 -0.2233 -2.4826 7 7 1.9157 -0.9725 -3.5460 8 14 1.0276 1.5007 -2.6684 9 1 2.1417 2.4817 -2.7083 10 1 0.2469 1.5866 -3.9287 11 1 0.1417 1.8044 -1.5158 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5769 -1.4794 3.7809 16 7 1.4289 0.1447 4.7700 17 6 1.7829 -0.3559 6.1006 18 6 1.1496 0.5395 7.1673 19 7 1.5040 0.0394 8.4979 20 6 0.7874 -0.8944 9.2459 21 6 -0.3841 -1.5992 9.0181 22 6 -0.8594 -2.4707 9.9785 23 6 -0.1688 -2.6419 11.1658 24 6 0.9993 -1.9430 11.3998 25 6 1.4838 -1.0659 10.4420 26 8 2.5747 -0.2628 10.3915 27 6 2.5840 0.3953 9.2216 28 8 3.4325 1.1927 8.8711 29 1 -0.3633 0.6518 0.7945 30 1 -0.3633 0.3622 -0.9617 31 1 -0.3633 -1.0140 0.1673 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6980 -0.6296 -4.4269 36 1 3.1301 -0.7216 1.2489 37 1 1.6767 -1.7490 1.2492 38 1 0.9943 0.7582 2.3564 39 1 0.8709 0.9331 4.6810 40 1 2.8668 -0.3475 6.2153 41 1 1.4131 -1.3748 6.2156 42 1 0.0657 0.5308 7.0524 43 1 1.5190 1.5586 7.0524 44 1 -0.9239 -1.4673 8.0920 45 1 -1.7723 -3.0203 9.8026 46 1 -0.5451 -3.3251 11.9128 47 1 1.5349 -2.0802 12.3275 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458348784.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:16 Heat of formation + Delta-G solvation = -23.279443 kcal Electronic energy + Delta-G solvation = -29715.012652 eV Core-core repulsion = 25479.323305 eV Total energy + Delta-G solvation = -4235.689347 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.73154 -39.84674 -39.07792 -38.04421 -37.11985 -36.59393 -34.65870 -33.33971 -31.59909 -31.29038 -30.58583 -29.18982 -26.42964 -26.03876 -25.01620 -24.09904 -23.88832 -23.28767 -21.76554 -20.80401 -19.24222 -19.13206 -18.51089 -18.05833 -17.67530 -16.97994 -16.29097 -16.06253 -15.83523 -15.39247 -15.29034 -15.23079 -14.86174 -14.50648 -14.32487 -14.23676 -13.84777 -13.81845 -13.45782 -13.26320 -12.93748 -12.89022 -12.63399 -12.43943 -12.23467 -12.09265 -12.03989 -11.84215 -11.35423 -11.28714 -11.17629 -10.44998 -10.33737 -10.19218 -10.08811 -9.95763 -9.39099 -9.23376 -9.15349 -8.71068 -8.68998 -8.51399 -8.41106 -6.16006 -4.13255 0.51236 0.58498 1.47970 2.02329 2.32116 2.92337 3.00570 3.22221 3.29233 3.37093 3.45110 3.76805 3.97066 4.27346 4.29143 4.33871 4.49002 4.55764 4.61572 4.67852 4.75802 4.76096 5.14547 5.15434 5.30508 5.44205 5.51231 5.66550 5.72601 5.75894 5.80404 5.99317 6.02305 6.05628 6.32172 6.33537 6.41190 6.51171 6.59069 6.68822 6.69182 6.78532 6.93770 7.08656 7.18984 7.21259 7.41380 7.70982 8.22292 8.44793 8.83211 8.90080 9.47646 10.97018 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023343 B = 0.001863 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.197803 B =15029.671408 C =15511.142751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.028 3.972 3 C -0.147 4.147 4 C -0.512 4.512 5 H 0.077 0.923 6 C 0.074 3.926 7 N -0.890 5.890 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.306 1.306 11 H -0.250 1.250 12 C 0.160 3.840 13 N -0.736 5.736 14 C 0.701 3.299 15 O -0.591 6.591 16 N -0.752 5.752 17 C 0.124 3.876 18 C 0.122 3.878 19 N -0.542 5.542 20 C 0.072 3.928 21 C -0.098 4.098 22 C -0.097 4.097 23 C -0.108 4.108 24 C -0.079 4.079 25 C 0.034 3.966 26 O -0.236 6.236 27 C 0.637 3.363 28 O -0.479 6.479 29 H 0.021 0.979 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.041 0.959 34 H 0.029 0.971 35 H 0.265 0.735 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.392 0.608 39 H 0.395 0.605 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.137 0.863 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.944 1.473 30.604 32.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.027 3.973 3 C -0.204 4.204 4 C -0.550 4.550 5 H 0.095 0.905 6 C -0.128 4.128 7 N -0.527 5.527 8 Si 0.719 3.281 9 H -0.214 1.214 10 H -0.234 1.234 11 H -0.176 1.176 12 C 0.037 3.963 13 N -0.390 5.390 14 C 0.401 3.599 15 O -0.469 6.469 16 N -0.410 5.410 17 C -0.002 4.002 18 C 0.001 3.999 19 N -0.275 5.275 20 C -0.026 4.026 21 C -0.119 4.119 22 C -0.116 4.116 23 C -0.127 4.127 24 C -0.098 4.098 25 C -0.013 4.013 26 O -0.141 6.141 27 C 0.392 3.608 28 O -0.361 6.361 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.227 0.773 39 H 0.229 0.771 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.155 0.845 45 H 0.158 0.842 46 H 0.160 0.840 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.574 1.056 30.371 31.575 hybrid contribution -0.744 1.801 -0.529 2.019 sum -9.318 2.857 29.842 31.393 Atomic orbital electron populations 1.22284 0.97852 0.99795 0.99872 1.18736 0.92517 0.92291 0.93760 1.22352 1.01257 0.98287 0.98468 1.20707 1.34059 1.12338 0.87926 0.90494 1.24984 0.94720 0.97308 0.95803 1.69954 1.48147 1.35877 0.98710 0.87284 0.79302 0.85571 0.75931 1.21381 1.23428 1.17585 1.21407 0.98461 0.95455 0.80980 1.45485 1.55802 1.33068 1.04650 1.15944 0.80502 0.82976 0.80485 1.90929 1.42568 1.27516 1.85898 1.44834 1.58040 1.33667 1.04439 1.21368 1.00998 0.97549 0.80300 1.21758 1.01735 0.99196 0.77194 1.45646 1.23431 1.40360 1.18026 1.18581 0.96674 0.95656 0.91687 1.20179 0.93555 0.96985 1.01204 1.21068 1.00244 0.97348 0.92903 1.20995 0.94083 0.99590 0.98051 1.20073 0.96818 0.94815 0.98063 1.19035 0.87656 0.97952 0.96612 1.85022 1.41665 1.50677 1.36776 1.18523 0.82312 0.81496 0.78515 1.91200 1.39723 1.34445 1.70758 0.96039 0.92562 0.93397 0.92759 0.94092 0.95242 0.92558 0.92108 0.92006 0.77330 0.77150 0.90869 0.90985 0.87983 0.87585 0.84522 0.84165 0.83986 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 7.53 37.16 0.28 -2.50 16 2 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 3 C -0.15 -2.93 7.52 37.16 0.28 -2.65 16 4 C -0.51 -13.65 8.62 -34.44 -0.30 -13.94 16 5 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 6 C 0.07 2.06 5.32 -17.82 -0.09 1.96 16 7 N -0.89 -26.47 13.96 55.43 0.77 -25.69 16 8 Si 0.89 20.89 22.79 -169.99 -3.87 17.02 16 9 H -0.29 -6.75 7.10 56.52 0.40 -6.35 16 10 H -0.31 -7.38 7.11 56.52 0.40 -6.98 16 11 H -0.25 -5.31 4.65 56.52 0.26 -5.04 16 12 C 0.16 3.18 4.49 -4.04 -0.02 3.16 16 13 N -0.74 -11.70 5.01 -65.22 -0.33 -12.02 16 14 C 0.70 11.35 8.57 -86.92 -0.74 10.60 16 15 O -0.59 -12.31 16.34 5.28 0.09 -12.22 16 16 N -0.75 -8.23 5.56 -65.22 -0.36 -8.59 16 17 C 0.12 1.28 6.00 -4.04 -0.02 1.25 16 18 C 0.12 0.87 6.15 -4.04 -0.02 0.84 16 19 N -0.54 -4.95 2.81 -119.01 -0.33 -5.28 16 20 C 0.07 0.57 6.84 -83.79 -0.57 0.00 16 21 C -0.10 -0.55 10.03 -39.49 -0.40 -0.94 16 22 C -0.10 -0.39 10.04 -39.56 -0.40 -0.79 16 23 C -0.11 -0.41 10.03 -39.56 -0.40 -0.81 16 24 C -0.08 -0.44 10.06 -39.49 -0.40 -0.83 16 25 C 0.03 0.29 7.35 -38.99 -0.29 0.00 16 26 O -0.24 -2.60 10.72 -21.97 -0.24 -2.84 16 27 C 0.64 7.62 9.07 54.06 0.49 8.11 16 28 O -0.48 -7.18 17.81 -19.01 -0.34 -7.52 16 29 H 0.02 0.34 7.13 -51.93 -0.37 -0.03 16 30 H 0.06 1.19 4.30 -51.93 -0.22 0.97 16 31 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.04 0.87 2.25 -51.93 -0.12 0.75 16 34 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.06 1.32 8.14 -51.92 -0.42 0.89 16 38 H 0.39 5.22 6.27 -40.82 -0.26 4.97 16 39 H 0.40 2.93 8.49 -40.82 -0.35 2.59 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.11 0.72 8.06 -51.93 -0.42 0.30 16 44 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 45 H 0.14 0.24 8.06 -52.49 -0.42 -0.19 16 46 H 0.14 0.16 8.06 -52.49 -0.42 -0.26 16 47 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 LS Contribution 380.85 15.07 5.74 5.74 Total: -1.00 -35.60 380.85 -7.98 -43.58 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.43 Total: 3.83 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -2.68 Total: 4.00 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -0.25 Total: -51.59 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.49 Total: -22.58 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -3.87 Total: 17.02 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.60 -7.98 -43.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458348784.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.303 kcal (2) G-P(sol) polarization free energy of solvation -35.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds