Wall clock time and date at job start Wed Apr 1 2020 05:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47260 * 2 1 4 4 C 1.50698 * 109.47036 * 239.99945 * 2 1 3 5 5 H 1.07998 * 120.00563 * 241.34390 * 4 2 1 6 6 C 1.37884 * 119.99917 * 61.35155 * 4 2 1 7 7 N 1.31516 * 119.99994 * 193.98027 * 6 4 2 8 8 Si 1.86803 * 119.99898 * 13.97066 * 6 4 2 9 9 H 1.48497 * 109.46830 * 84.55452 * 8 6 4 10 10 H 1.48497 * 109.46910 * 204.55436 * 8 6 4 11 11 H 1.48502 * 109.47334 * 324.55144 * 8 6 4 12 12 C 1.52996 * 109.47303 * 120.00019 * 2 1 3 13 13 N 1.46502 * 109.47331 * 300.00377 * 12 2 1 14 14 C 1.34771 * 120.00170 * 180.02562 * 13 12 2 15 15 O 1.21592 * 119.99773 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00153 * 179.97438 * 14 13 12 17 17 C 1.46505 * 120.00001 * 179.97438 * 16 14 13 18 18 C 1.52995 * 109.46749 * 180.02562 * 17 16 14 19 19 N 1.46503 * 109.47116 * 180.02562 * 18 17 16 20 20 C 1.39466 * 126.25461 * 270.17647 * 19 18 17 21 21 C 1.38602 * 133.36566 * 359.95379 * 20 19 18 22 22 C 1.38126 * 119.82702 * 180.38205 * 21 20 19 23 23 C 1.38416 * 120.18563 * 359.96127 * 22 21 20 24 24 C 1.38122 * 120.31022 * 0.04062 * 23 22 21 25 25 C 1.38612 * 119.91680 * 359.97438 * 24 23 22 26 26 O 1.35560 * 132.99459 * 179.97438 * 25 24 23 27 27 C 1.34224 * 109.17765 * 180.02562 * 26 25 24 28 28 O 1.21601 * 125.27575 * 180.02562 * 27 26 25 29 29 H 1.08994 * 109.47081 * 309.36538 * 1 2 3 30 30 H 1.09000 * 109.47075 * 69.36386 * 1 2 3 31 31 H 1.09000 * 109.46670 * 189.36622 * 1 2 3 32 32 H 1.08996 * 109.47615 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46873 * 300.00508 * 3 2 1 34 34 H 1.09002 * 109.47017 * 60.00292 * 3 2 1 35 35 H 0.97004 * 119.99578 * 180.02562 * 7 6 4 36 36 H 1.08999 * 109.47089 * 179.97438 * 12 2 1 37 37 H 1.09007 * 109.47137 * 60.00076 * 12 2 1 38 38 H 0.97004 * 119.99556 * 359.97438 * 13 12 2 39 39 H 0.96996 * 119.99703 * 0.02562 * 16 14 13 40 40 H 1.08999 * 109.46777 * 60.00531 * 17 16 14 41 41 H 1.09004 * 109.47048 * 300.00358 * 17 16 14 42 42 H 1.08999 * 109.47319 * 60.00531 * 18 17 16 43 43 H 1.09004 * 109.47367 * 299.99830 * 18 17 16 44 44 H 1.07996 * 120.08582 * 0.38466 * 21 20 19 45 45 H 1.08001 * 119.91197 * 179.97438 * 22 21 20 46 46 H 1.07995 * 119.84447 * 180.02562 * 23 22 21 47 47 H 1.07995 * 120.04226 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6352 -1.6010 -1.1316 6 6 1.7224 -0.2233 -2.4826 7 7 1.9157 -0.9725 -3.5460 8 14 1.0276 1.5007 -2.6684 9 1 2.1417 2.4817 -2.7083 10 1 0.2469 1.5866 -3.9287 11 1 0.1417 1.8044 -1.5158 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5769 -1.4794 3.7809 16 7 1.4289 0.1447 4.7700 17 6 1.7829 -0.3559 6.1006 18 6 1.1496 0.5395 7.1673 19 7 1.5040 0.0394 8.4979 20 6 0.7874 -0.8944 9.2459 21 6 -0.3841 -1.5992 9.0181 22 6 -0.8594 -2.4707 9.9785 23 6 -0.1688 -2.6419 11.1658 24 6 0.9993 -1.9430 11.3998 25 6 1.4838 -1.0659 10.4420 26 8 2.5747 -0.2628 10.3915 27 6 2.5840 0.3953 9.2216 28 8 3.4325 1.1927 8.8711 29 1 -0.3633 0.6518 0.7945 30 1 -0.3633 0.3622 -0.9617 31 1 -0.3633 -1.0140 0.1673 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6980 -0.6296 -4.4269 36 1 3.1301 -0.7216 1.2489 37 1 1.6767 -1.7490 1.2492 38 1 0.9943 0.7582 2.3564 39 1 0.8709 0.9331 4.6810 40 1 2.8668 -0.3475 6.2153 41 1 1.4131 -1.3748 6.2156 42 1 0.0657 0.5308 7.0524 43 1 1.5190 1.5586 7.0524 44 1 -0.9239 -1.4673 8.0920 45 1 -1.7723 -3.0203 9.8026 46 1 -0.5451 -3.3251 11.9128 47 1 1.5349 -2.0802 12.3275 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458348784.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:16 Heat of formation + Delta-G solvation = -49.978326 kcal Electronic energy + Delta-G solvation = -29716.170402 eV Core-core repulsion = 25479.323305 eV Total energy + Delta-G solvation = -4236.847097 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.40045 -41.15426 -39.72287 -38.85590 -38.49534 -37.51431 -35.70423 -34.99422 -33.43968 -31.75704 -31.29418 -29.87616 -28.00648 -27.50318 -26.89029 -25.12685 -24.46028 -23.84426 -22.45287 -22.06497 -20.93333 -19.73899 -19.59729 -18.80148 -18.49804 -18.03039 -17.70651 -17.32605 -17.09174 -16.86311 -16.24181 -15.81154 -15.64532 -15.52699 -15.34046 -15.06339 -14.94213 -14.83052 -14.58255 -14.54780 -14.37860 -14.21348 -13.96086 -13.73648 -13.26219 -13.09626 -13.02835 -12.73009 -12.38089 -12.33610 -12.13835 -12.02596 -11.93930 -11.78142 -11.74656 -11.43927 -11.04148 -10.60906 -10.44413 -10.37824 -9.81940 -9.77098 -9.25769 -8.28855 -6.30546 0.07820 0.13303 0.77203 1.20654 1.37278 1.39393 1.52330 1.62627 1.89270 2.14040 2.35948 2.60957 3.07104 3.25726 3.38689 3.40803 3.56324 3.91255 4.03641 4.08726 4.15195 4.20841 4.27447 4.35178 4.39436 4.43249 4.61044 4.65502 4.74814 4.79390 4.85041 4.88741 4.96846 4.99420 5.08334 5.17707 5.20348 5.32109 5.35066 5.44933 5.45417 5.56711 5.60813 5.73709 5.82160 6.00324 6.07402 6.32334 6.39010 6.73772 7.12396 7.33908 7.58002 8.88303 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023343 B = 0.001863 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.197803 B =15029.671408 C =15511.142751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.028 3.972 3 C -0.147 4.147 4 C -0.517 4.517 5 H 0.026 0.974 6 C 0.014 3.986 7 N -0.947 5.947 8 Si 0.946 3.054 9 H -0.284 1.284 10 H -0.316 1.316 11 H -0.199 1.199 12 C 0.176 3.824 13 N -0.721 5.721 14 C 0.700 3.300 15 O -0.642 6.642 16 N -0.724 5.724 17 C 0.130 3.870 18 C 0.128 3.872 19 N -0.535 5.535 20 C 0.051 3.949 21 C -0.099 4.099 22 C -0.090 4.090 23 C -0.098 4.098 24 C -0.084 4.084 25 C -0.002 4.002 26 O -0.252 6.252 27 C 0.627 3.373 28 O -0.526 6.526 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.264 0.736 36 H 0.036 0.964 37 H 0.039 0.961 38 H 0.411 0.589 39 H 0.418 0.582 40 H 0.039 0.961 41 H 0.067 0.933 42 H 0.144 0.856 43 H 0.112 0.888 44 H 0.157 0.843 45 H 0.172 0.828 46 H 0.175 0.825 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.898 3.099 33.224 36.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.026 3.974 3 C -0.203 4.203 4 C -0.556 4.556 5 H 0.044 0.956 6 C -0.184 4.184 7 N -0.586 5.586 8 Si 0.776 3.224 9 H -0.212 1.212 10 H -0.246 1.246 11 H -0.123 1.123 12 C 0.052 3.948 13 N -0.377 5.377 14 C 0.399 3.601 15 O -0.524 6.524 16 N -0.383 5.383 17 C 0.003 3.997 18 C 0.008 3.992 19 N -0.267 5.267 20 C -0.045 4.045 21 C -0.120 4.120 22 C -0.109 4.109 23 C -0.116 4.116 24 C -0.103 4.103 25 C -0.047 4.047 26 O -0.158 6.158 27 C 0.382 3.618 28 O -0.412 6.412 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.248 0.752 39 H 0.256 0.744 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.162 0.838 43 H 0.130 0.870 44 H 0.174 0.826 45 H 0.189 0.811 46 H 0.193 0.807 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.609 2.713 33.071 35.497 hybrid contribution 0.475 1.044 -1.206 1.664 sum -12.134 3.757 31.865 34.303 Atomic orbital electron populations 1.22196 0.95683 1.00760 1.00968 1.18667 0.94077 0.93048 0.91565 1.22292 1.00858 0.96828 1.00353 1.21028 1.32859 1.11054 0.90612 0.95584 1.25905 0.95495 1.01761 0.95214 1.70123 1.50747 1.38318 0.99393 0.86314 0.79371 0.79675 0.77072 1.21200 1.24568 1.12296 1.20888 0.96935 0.94705 0.82306 1.45039 1.55949 1.33323 1.03424 1.16091 0.80071 0.82571 0.81340 1.90908 1.44818 1.30008 1.86661 1.44486 1.57020 1.33609 1.03204 1.21318 0.99342 0.98331 0.80680 1.21873 1.03771 0.98320 0.75266 1.45621 1.22612 1.40267 1.18189 1.18880 0.97765 0.96424 0.91475 1.20547 0.92553 0.96475 1.02409 1.21542 1.00865 0.96280 0.92186 1.21464 0.92761 0.98728 0.98664 1.20469 0.97530 0.94155 0.98097 1.19585 0.87573 0.99234 0.98311 1.84937 1.43114 1.51174 1.36564 1.18687 0.82623 0.81470 0.78971 1.91139 1.41470 1.36624 1.71976 0.91195 0.93689 0.94002 0.93805 0.94689 0.90516 0.92723 0.94554 0.94234 0.75152 0.74391 0.94206 0.91449 0.83795 0.87026 0.82575 0.81056 0.80718 0.82674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.99 7.53 71.98 0.54 -4.45 16 2 C 0.03 1.15 0.50 -52.93 -0.03 1.12 16 3 C -0.15 -5.34 7.52 71.98 0.54 -4.79 16 4 C -0.52 -28.41 8.62 25.60 0.22 -28.19 16 5 H 0.03 1.64 7.99 -2.91 -0.02 1.61 16 6 C 0.01 0.76 5.32 84.66 0.45 1.21 16 7 N -0.95 -58.67 13.96 21.45 0.30 -58.38 16 8 Si 0.95 42.17 22.79 68.60 1.56 43.73 16 9 H -0.28 -12.54 7.10 99.48 0.71 -11.84 16 10 H -0.32 -14.57 7.11 99.48 0.71 -13.86 16 11 H -0.20 -7.31 4.65 99.48 0.46 -6.85 16 12 C 0.18 6.99 4.49 86.38 0.39 7.38 16 13 N -0.72 -21.07 5.01 -478.53 -2.40 -23.47 16 14 C 0.70 21.54 8.57 179.06 1.53 23.07 16 15 O -0.64 -27.00 16.34 -4.01 -0.07 -27.06 16 16 N -0.72 -13.92 5.56 -478.53 -2.66 -16.58 16 17 C 0.13 2.51 6.00 86.38 0.52 3.03 16 18 C 0.13 1.54 6.15 86.38 0.53 2.07 16 19 N -0.54 -9.41 2.81 -761.03 -2.14 -11.54 16 20 C 0.05 0.74 6.84 38.31 0.26 1.00 16 21 C -0.10 -0.78 10.03 22.33 0.22 -0.55 16 22 C -0.09 -0.35 10.04 22.29 0.22 -0.12 16 23 C -0.10 -0.38 10.03 22.28 0.22 -0.16 16 24 C -0.08 -0.78 10.06 22.33 0.22 -0.55 16 25 C 0.00 -0.03 7.35 22.66 0.17 0.14 16 26 O -0.25 -5.88 10.72 8.57 0.09 -5.79 16 27 C 0.63 15.74 9.07 129.79 1.18 16.91 16 28 O -0.53 -16.77 17.81 19.19 0.34 -16.43 16 29 H 0.07 1.84 7.13 -2.39 -0.02 1.83 16 30 H 0.04 1.72 4.30 -2.39 -0.01 1.71 16 31 H 0.04 1.54 8.12 -2.39 -0.02 1.52 16 32 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.03 1.33 2.25 -2.39 -0.01 1.32 16 34 H 0.08 2.07 6.86 -2.39 -0.02 2.05 16 35 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 36 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.41 8.85 6.27 -92.71 -0.58 8.27 16 39 H 0.42 4.32 8.49 -92.71 -0.79 3.53 16 40 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.11 1.28 8.06 -2.38 -0.02 1.26 16 44 H 0.16 0.56 8.06 -2.91 -0.02 0.53 16 45 H 0.17 -0.37 8.06 -2.91 -0.02 -0.39 16 46 H 0.18 -0.45 8.06 -2.91 -0.02 -0.47 16 47 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 Total: -1.00 -86.43 380.85 1.65 -84.78 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -0.58 Total: 13.63 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 7.20 Total: 17.11 kcal Atomic # 7 Polarization: -103.07 SS G_CDS: -6.89 Total: -109.96 kcal Atomic # 8 Polarization: -49.65 SS G_CDS: 0.37 Total: -49.28 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.56 Total: 43.73 kcal Total: -86.43 1.65 -84.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458348784.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.800 kcal (2) G-P(sol) polarization free energy of solvation -86.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds