Wall clock time and date at job start Wed Apr 1 2020 05:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 117.00126 * 2 1 4 4 O 1.20821 * 119.99655 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00056 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47412 * 60.00097 * 5 3 2 7 7 C 1.53001 * 109.47156 * 180.02562 * 5 3 2 8 8 N 1.46498 * 109.47089 * 184.99767 * 7 5 3 9 9 S 1.65602 * 119.99612 * 164.71987 * 8 7 5 10 10 O 1.42109 * 104.27511 * 181.34803 * 9 8 7 11 11 O 1.42098 * 104.28120 * 309.20801 * 9 8 7 12 12 C 1.81394 * 104.44973 * 65.28269 * 9 8 7 13 13 C 1.53003 * 109.47387 * 179.97438 * 12 9 8 14 14 C 1.53000 * 109.46517 * 299.99470 * 13 12 9 15 15 C 1.52993 * 109.47159 * 59.99605 * 13 12 9 16 16 C 1.50707 * 109.47138 * 179.97438 * 13 12 9 17 17 H 1.08001 * 119.99608 * 359.97438 * 16 13 12 18 18 C 1.37871 * 119.99869 * 179.97438 * 16 13 12 19 19 N 1.31520 * 119.99869 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 120.00166 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47285 * 89.99841 * 20 18 16 22 22 H 1.48504 * 109.47506 * 210.00094 * 20 18 16 23 23 H 1.48502 * 109.47051 * 330.00121 * 20 18 16 24 24 C 1.53001 * 109.46962 * 300.00027 * 5 3 2 25 25 C 1.53005 * 109.47169 * 65.00308 * 24 5 3 26 26 C 1.52997 * 117.49835 * 243.74490 * 25 24 5 27 27 C 1.52995 * 117.49989 * 175.08311 * 25 24 5 28 28 H 1.09005 * 109.47312 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47677 * 300.00141 * 1 2 3 30 30 H 1.09006 * 109.47292 * 60.00104 * 1 2 3 31 31 H 1.08996 * 109.47377 * 64.99925 * 7 5 3 32 32 H 1.08999 * 109.46886 * 305.00063 * 7 5 3 33 33 H 0.97001 * 120.00384 * 345.00465 * 8 7 5 34 34 H 1.09009 * 109.47044 * 299.99503 * 12 9 8 35 35 H 1.09001 * 109.47747 * 59.99183 * 12 9 8 36 36 H 1.08994 * 109.47224 * 60.00651 * 14 13 12 37 37 H 1.09008 * 109.46641 * 179.97438 * 14 13 12 38 38 H 1.09001 * 109.47344 * 299.99451 * 14 13 12 39 39 H 1.09002 * 109.47371 * 59.99841 * 15 13 12 40 40 H 1.08994 * 109.47114 * 180.02562 * 15 13 12 41 41 H 1.08998 * 109.47012 * 299.99873 * 15 13 12 42 42 H 0.97007 * 119.99442 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.46920 * 185.00063 * 24 5 3 44 44 H 1.09000 * 109.47737 * 305.00030 * 24 5 3 45 45 H 1.09002 * 115.54644 * 29.41473 * 25 24 5 46 46 H 1.09001 * 117.49908 * 359.97438 * 26 25 24 47 47 H 1.09002 * 117.49835 * 145.01512 * 26 25 24 48 48 H 1.08999 * 117.50419 * 214.97641 * 27 25 24 49 49 H 1.09010 * 117.49963 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9564 0.7805 -0.8892 7 6 4.0001 2.7420 0.0011 8 7 5.4581 2.8202 -0.1187 9 16 6.1799 4.2549 -0.5224 10 8 7.5662 3.9470 -0.5754 11 8 5.4802 4.6853 -1.6818 12 6 5.8245 5.3505 0.8789 13 6 6.4472 6.7244 0.6229 14 6 7.9616 6.5760 0.4630 15 6 5.8555 7.3225 -0.6549 16 6 6.1514 7.6348 1.7869 17 1 5.5763 7.2700 2.6252 18 6 6.6148 8.9333 1.7816 19 7 7.3155 9.3773 0.7610 20 14 6.2488 10.0616 3.2247 21 1 7.3317 9.9420 4.2337 22 1 6.1696 11.4657 2.7476 23 1 4.9540 9.6741 3.8399 24 6 4.1128 0.5815 1.2502 25 6 3.7858 -0.9120 1.1890 26 6 2.8551 -1.4760 2.2645 27 6 4.3498 -1.8046 2.2963 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 3.6863 3.2134 0.9324 32 1 3.5382 3.2577 -0.8408 33 1 6.0004 2.0306 0.0345 34 1 4.7456 5.4559 0.9932 35 1 6.2464 4.9247 1.7893 36 1 8.1752 5.9178 -0.3791 37 1 8.4052 7.5548 0.2801 38 1 8.3832 6.1500 1.3734 39 1 4.7766 7.4281 -0.5410 40 1 6.2995 8.3010 -0.8375 41 1 6.0692 6.6641 -1.4969 42 1 7.6419 10.2908 0.7575 43 1 5.1936 0.7151 1.2965 44 1 3.6544 1.0177 2.1377 45 1 3.7137 -1.3368 0.1878 46 1 2.4761 -0.7832 3.0158 47 1 2.1709 -2.2721 1.9709 48 1 4.6484 -2.8168 2.0237 49 1 4.9543 -1.3279 3.0681 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583698109.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:13 Heat of formation + Delta-G solvation = -141.915968 kcal Electronic energy + Delta-G solvation = -29972.266634 eV Core-core repulsion = 25834.584021 eV Total energy + Delta-G solvation = -4137.682612 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.91633 -38.11378 -37.00461 -36.53906 -36.26428 -35.78515 -35.28171 -32.12995 -31.65186 -28.03139 -26.90051 -26.61395 -25.70054 -25.21647 -23.67475 -22.60377 -21.16108 -20.48131 -19.64805 -18.90176 -17.87658 -17.43765 -16.89599 -16.52573 -16.13447 -15.79742 -15.72264 -15.30039 -14.85953 -14.72948 -14.46970 -14.27979 -13.83774 -13.42481 -13.09471 -13.04708 -12.98848 -12.66860 -12.49336 -12.17433 -12.09529 -11.86667 -11.79126 -11.76454 -11.45522 -11.36998 -11.08608 -11.06089 -11.04009 -10.92461 -10.69743 -10.65709 -10.45776 -10.37419 -10.26576 -10.13826 -10.09434 -9.65676 -9.63128 -9.29537 -8.66896 -8.39009 -6.02399 -4.14296 0.83412 1.96341 2.39478 3.22959 3.26716 3.34018 3.36333 3.52716 4.08791 4.24422 4.31218 4.39168 4.47933 4.66192 4.71822 4.80233 4.83495 4.84288 4.92413 4.97571 5.15352 5.22956 5.25046 5.35520 5.38965 5.44577 5.54218 5.60075 5.65955 5.71697 5.72992 5.86310 5.93379 6.00415 6.13462 6.39158 6.71852 6.81079 6.91570 7.00350 7.08832 7.33245 7.50234 7.51956 7.69086 7.99638 8.10854 8.34154 8.84203 9.51130 10.98925 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014355 B = 0.002770 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.077372 B =10104.600495 C =10396.617434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.347 6.347 3 C 0.470 3.530 4 O -0.501 6.501 5 C -0.084 4.084 6 H 0.120 0.880 7 C 0.129 3.871 8 N -1.131 6.131 9 S 2.594 3.406 10 O -0.963 6.963 11 O -0.962 6.962 12 C -0.582 4.582 13 C 0.082 3.918 14 C -0.164 4.164 15 C -0.164 4.164 16 C -0.502 4.502 17 H 0.059 0.941 18 C 0.064 3.936 19 N -0.884 5.884 20 Si 0.896 3.104 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.086 4.086 25 C -0.147 4.147 26 C -0.170 4.170 27 C -0.184 4.184 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.411 0.589 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.028 0.972 37 H 0.095 0.905 38 H 0.036 0.964 39 H 0.037 0.963 40 H 0.095 0.905 41 H 0.028 0.972 42 H 0.262 0.738 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.110 0.890 46 H 0.089 0.911 47 H 0.092 0.908 48 H 0.093 0.907 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.696 -22.474 0.946 24.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.263 6.263 3 C 0.311 3.689 4 O -0.388 6.388 5 C -0.105 4.105 6 H 0.137 0.863 7 C 0.002 3.998 8 N -0.888 5.888 9 S 2.692 3.308 10 O -0.953 6.953 11 O -0.952 6.952 12 C -0.715 4.715 13 C 0.080 3.920 14 C -0.222 4.222 15 C -0.222 4.222 16 C -0.541 4.541 17 H 0.077 0.923 18 C -0.137 4.137 19 N -0.522 5.522 20 Si 0.724 3.276 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.123 4.123 25 C -0.165 4.165 26 C -0.207 4.207 27 C -0.221 4.221 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.245 0.755 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.046 0.954 37 H 0.114 0.886 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.113 0.887 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.128 0.872 46 H 0.108 0.892 47 H 0.110 0.890 48 H 0.111 0.889 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.490 -21.717 0.018 23.700 hybrid contribution -0.583 0.378 1.540 1.689 sum -10.072 -21.339 1.558 23.648 Atomic orbital electron populations 1.23262 0.76645 1.03497 1.02606 1.86558 1.22985 1.32860 1.83881 1.23453 0.91514 0.81570 0.72338 1.90723 1.67034 1.36287 1.44708 1.21277 0.88014 0.98530 1.02639 0.86262 1.21078 0.80235 0.94470 1.03971 1.55921 1.13864 1.29052 1.90003 1.05632 0.73796 0.73677 0.77677 1.93560 1.31401 1.82810 1.87549 1.93546 1.74636 1.81017 1.45982 1.30523 1.10504 1.13541 1.16967 1.17929 0.91843 0.86114 0.96121 1.22280 0.97829 1.03453 0.98607 1.22277 0.99946 1.04383 0.95581 1.20949 1.34361 0.95736 1.03087 0.92293 1.24936 0.94850 0.97893 0.96068 1.69808 1.35987 1.16777 1.29602 0.86535 0.78670 0.79974 0.82452 1.20668 1.21141 1.19947 1.21262 1.02206 0.92845 0.95994 1.22255 1.04681 0.93838 0.95747 1.22934 0.92809 1.03448 1.01528 1.23011 0.96765 1.00569 1.01714 0.88257 0.91909 0.91934 0.90586 0.88846 0.75502 0.86336 0.86188 0.95365 0.88635 0.94458 0.94413 0.88667 0.95319 0.92758 0.89311 0.90647 0.87223 0.89228 0.88990 0.88892 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.35 -3.00 8.44 -39.25 -0.33 -3.33 16 3 C 0.47 4.98 7.24 36.01 0.26 5.25 16 4 O -0.50 -6.91 15.67 -18.75 -0.29 -7.20 16 5 C -0.08 -0.77 2.39 -91.77 -0.22 -0.99 16 6 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 7 C 0.13 1.53 4.88 -4.04 -0.02 1.51 16 8 N -1.13 -14.27 5.74 -10.61 -0.06 -14.33 16 9 S 2.59 46.77 4.49 -107.50 -0.48 46.29 16 10 O -0.96 -19.59 15.70 -57.54 -0.90 -20.49 16 11 O -0.96 -20.04 15.11 -57.54 -0.87 -20.90 16 12 C -0.58 -11.20 5.02 37.16 0.19 -11.02 16 13 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 14 C -0.16 -4.03 7.78 37.16 0.29 -3.74 16 15 C -0.16 -4.06 7.77 37.15 0.29 -3.78 16 16 C -0.50 -13.21 8.01 -34.44 -0.28 -13.49 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.72 5.15 -17.82 -0.09 1.62 16 19 N -0.88 -24.20 9.35 55.43 0.52 -23.68 16 20 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.09 -0.65 4.88 -26.73 -0.13 -0.78 16 25 C -0.15 -1.02 4.12 -90.62 -0.37 -1.39 16 26 C -0.17 -1.14 9.67 -26.69 -0.26 -1.40 16 27 C -0.18 -1.19 10.25 -26.70 -0.27 -1.47 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 30 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 1.25 7.50 -51.93 -0.39 0.87 16 33 H 0.41 4.12 7.34 -34.47 -0.25 3.86 16 34 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 35 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 36 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 37 H 0.10 2.53 6.07 -51.92 -0.32 2.22 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 41 H 0.03 0.67 5.47 -51.93 -0.28 0.39 16 42 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.09 0.61 6.79 -51.93 -0.35 0.25 16 44 H 0.07 0.59 7.88 -51.93 -0.41 0.18 16 45 H 0.11 0.74 8.03 -51.93 -0.42 0.32 16 46 H 0.09 0.63 8.03 -51.93 -0.42 0.21 16 47 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.09 0.61 8.14 -51.92 -0.42 0.18 16 LS Contribution 395.95 15.07 5.97 5.97 Total: -1.00 -33.32 395.95 -9.16 -42.48 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -8.05 Total: 5.97 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: 0.37 Total: -26.48 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.46 Total: -38.01 kcal Atomic # 8 Polarization: -49.53 SS G_CDS: -2.40 Total: -51.92 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 46.77 SS G_CDS: -0.48 Total: 46.29 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.32 -9.16 -42.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583698109.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.437 kcal (2) G-P(sol) polarization free energy of solvation -33.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds