Wall clock time and date at job start Wed Apr 1 2020 05:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 117.00126 * 2 1 4 4 O 1.20821 * 119.99655 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00056 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47412 * 60.00097 * 5 3 2 7 7 C 1.53001 * 109.47156 * 180.02562 * 5 3 2 8 8 N 1.46498 * 109.47089 * 184.99767 * 7 5 3 9 9 S 1.65602 * 119.99612 * 164.71987 * 8 7 5 10 10 O 1.42109 * 104.27511 * 181.34803 * 9 8 7 11 11 O 1.42098 * 104.28120 * 309.20801 * 9 8 7 12 12 C 1.81394 * 104.44973 * 65.28269 * 9 8 7 13 13 C 1.53003 * 109.47387 * 179.97438 * 12 9 8 14 14 C 1.53000 * 109.46517 * 299.99470 * 13 12 9 15 15 C 1.52993 * 109.47159 * 59.99605 * 13 12 9 16 16 C 1.50707 * 109.47138 * 179.97438 * 13 12 9 17 17 H 1.08001 * 119.99608 * 359.97438 * 16 13 12 18 18 C 1.37871 * 119.99869 * 179.97438 * 16 13 12 19 19 N 1.31520 * 119.99869 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 120.00166 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47285 * 89.99841 * 20 18 16 22 22 H 1.48504 * 109.47506 * 210.00094 * 20 18 16 23 23 H 1.48502 * 109.47051 * 330.00121 * 20 18 16 24 24 C 1.53001 * 109.46962 * 300.00027 * 5 3 2 25 25 C 1.53005 * 109.47169 * 65.00308 * 24 5 3 26 26 C 1.52997 * 117.49835 * 243.74490 * 25 24 5 27 27 C 1.52995 * 117.49989 * 175.08311 * 25 24 5 28 28 H 1.09005 * 109.47312 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47677 * 300.00141 * 1 2 3 30 30 H 1.09006 * 109.47292 * 60.00104 * 1 2 3 31 31 H 1.08996 * 109.47377 * 64.99925 * 7 5 3 32 32 H 1.08999 * 109.46886 * 305.00063 * 7 5 3 33 33 H 0.97001 * 120.00384 * 345.00465 * 8 7 5 34 34 H 1.09009 * 109.47044 * 299.99503 * 12 9 8 35 35 H 1.09001 * 109.47747 * 59.99183 * 12 9 8 36 36 H 1.08994 * 109.47224 * 60.00651 * 14 13 12 37 37 H 1.09008 * 109.46641 * 179.97438 * 14 13 12 38 38 H 1.09001 * 109.47344 * 299.99451 * 14 13 12 39 39 H 1.09002 * 109.47371 * 59.99841 * 15 13 12 40 40 H 1.08994 * 109.47114 * 180.02562 * 15 13 12 41 41 H 1.08998 * 109.47012 * 299.99873 * 15 13 12 42 42 H 0.97007 * 119.99442 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.46920 * 185.00063 * 24 5 3 44 44 H 1.09000 * 109.47737 * 305.00030 * 24 5 3 45 45 H 1.09002 * 115.54644 * 29.41473 * 25 24 5 46 46 H 1.09001 * 117.49908 * 359.97438 * 26 25 24 47 47 H 1.09002 * 117.49835 * 145.01512 * 26 25 24 48 48 H 1.08999 * 117.50419 * 214.97641 * 27 25 24 49 49 H 1.09010 * 117.49963 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9564 0.7805 -0.8892 7 6 4.0001 2.7420 0.0011 8 7 5.4581 2.8202 -0.1187 9 16 6.1799 4.2549 -0.5224 10 8 7.5662 3.9470 -0.5754 11 8 5.4802 4.6853 -1.6818 12 6 5.8245 5.3505 0.8789 13 6 6.4472 6.7244 0.6229 14 6 7.9616 6.5760 0.4630 15 6 5.8555 7.3225 -0.6549 16 6 6.1514 7.6348 1.7869 17 1 5.5763 7.2700 2.6252 18 6 6.6148 8.9333 1.7816 19 7 7.3155 9.3773 0.7610 20 14 6.2488 10.0616 3.2247 21 1 7.3317 9.9420 4.2337 22 1 6.1696 11.4657 2.7476 23 1 4.9540 9.6741 3.8399 24 6 4.1128 0.5815 1.2502 25 6 3.7858 -0.9120 1.1890 26 6 2.8551 -1.4760 2.2645 27 6 4.3498 -1.8046 2.2963 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 3.6863 3.2134 0.9324 32 1 3.5382 3.2577 -0.8408 33 1 6.0004 2.0306 0.0345 34 1 4.7456 5.4559 0.9932 35 1 6.2464 4.9247 1.7893 36 1 8.1752 5.9178 -0.3791 37 1 8.4052 7.5548 0.2801 38 1 8.3832 6.1500 1.3734 39 1 4.7766 7.4281 -0.5410 40 1 6.2995 8.3010 -0.8375 41 1 6.0692 6.6641 -1.4969 42 1 7.6419 10.2908 0.7575 43 1 5.1936 0.7151 1.2965 44 1 3.6544 1.0177 2.1377 45 1 3.7137 -1.3368 0.1878 46 1 2.4761 -0.7832 3.0158 47 1 2.1709 -2.2721 1.9709 48 1 4.6484 -2.8168 2.0237 49 1 4.9543 -1.3279 3.0681 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583698109.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:13 Heat of formation + Delta-G solvation = -162.985899 kcal Electronic energy + Delta-G solvation = -29973.180295 eV Core-core repulsion = 25834.584021 eV Total energy + Delta-G solvation = -4138.596273 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.70672 -38.75052 -38.12235 -38.10806 -37.71997 -36.92184 -36.63136 -33.62750 -32.99541 -28.62223 -28.30376 -27.67998 -27.66074 -27.23266 -24.50375 -23.08786 -21.85086 -21.35805 -21.14789 -20.33236 -18.93514 -18.60229 -17.91778 -17.68339 -17.27621 -17.20398 -16.91379 -16.58254 -16.27756 -15.84708 -15.43460 -15.03560 -14.97963 -14.64820 -14.49552 -14.40843 -14.20354 -13.81314 -13.74836 -13.55169 -13.24563 -13.02214 -12.88633 -12.85862 -12.77063 -12.72736 -12.56035 -12.48465 -12.25956 -12.16740 -12.14072 -11.98703 -11.94703 -11.73225 -11.55233 -11.49373 -11.36391 -10.98113 -10.74187 -10.62949 -10.41029 -10.36594 -8.02553 -6.20991 -0.62215 1.15650 1.43930 1.45884 1.54437 1.58999 2.04091 2.44562 2.84767 3.01424 3.19710 3.29327 3.39081 3.59949 3.83679 3.99492 4.11058 4.13956 4.18083 4.21319 4.33703 4.38239 4.39257 4.44705 4.52608 4.62071 4.75995 4.76633 4.80110 4.88129 4.88961 4.92198 4.97239 5.00658 5.04697 5.10669 5.17435 5.38511 5.39197 5.40434 5.49925 5.52526 5.65552 5.99299 6.10707 6.13661 6.35303 6.72212 6.83887 7.47295 8.97256 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014355 B = 0.002770 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.077372 B =10104.600495 C =10396.617434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.341 6.341 3 C 0.472 3.528 4 O -0.539 6.539 5 C -0.078 4.078 6 H 0.138 0.862 7 C 0.122 3.878 8 N -1.108 6.108 9 S 2.617 3.383 10 O -0.986 6.986 11 O -0.991 6.991 12 C -0.588 4.588 13 C 0.069 3.931 14 C -0.160 4.160 15 C -0.161 4.161 16 C -0.518 4.518 17 H 0.063 0.937 18 C 0.017 3.983 19 N -0.908 5.908 20 Si 0.954 3.046 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.268 1.268 24 C -0.084 4.084 25 C -0.149 4.149 26 C -0.174 4.174 27 C -0.181 4.181 28 H 0.131 0.869 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.427 0.573 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.042 0.958 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.034 0.966 42 H 0.261 0.739 43 H 0.100 0.900 44 H 0.073 0.927 45 H 0.115 0.885 46 H 0.084 0.916 47 H 0.098 0.902 48 H 0.100 0.900 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.365 -24.694 2.022 26.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.256 6.256 3 C 0.316 3.684 4 O -0.429 6.429 5 C -0.098 4.098 6 H 0.156 0.844 7 C -0.005 4.005 8 N -0.870 5.870 9 S 2.714 3.286 10 O -0.976 6.976 11 O -0.981 6.981 12 C -0.721 4.721 13 C 0.067 3.933 14 C -0.218 4.218 15 C -0.219 4.219 16 C -0.557 4.557 17 H 0.081 0.919 18 C -0.182 4.182 19 N -0.546 5.546 20 Si 0.780 3.220 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.193 1.193 24 C -0.121 4.121 25 C -0.167 4.167 26 C -0.211 4.211 27 C -0.218 4.218 28 H 0.149 0.851 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.265 0.735 34 H 0.151 0.849 35 H 0.160 0.840 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.118 0.882 44 H 0.091 0.909 45 H 0.133 0.867 46 H 0.103 0.897 47 H 0.116 0.884 48 H 0.119 0.881 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.148 -23.964 1.106 26.048 hybrid contribution -0.440 0.975 1.188 1.598 sum -10.589 -22.989 2.294 25.414 Atomic orbital electron populations 1.23512 0.75416 1.05471 1.02213 1.86554 1.24150 1.31648 1.83223 1.23695 0.91979 0.81513 0.71253 1.90714 1.67922 1.37559 1.46696 1.21247 0.87299 0.96885 1.04405 0.84385 1.21192 0.79045 0.96523 1.03703 1.55312 1.14450 1.27766 1.89512 1.04629 0.73028 0.74161 0.76761 1.93522 1.33054 1.83316 1.87693 1.93510 1.75139 1.82132 1.47325 1.30473 1.11290 1.11487 1.18837 1.17914 0.91729 0.88586 0.95049 1.22210 0.98373 1.02150 0.99083 1.22213 0.99767 1.03322 0.96549 1.21315 1.34172 0.96385 1.03830 0.91908 1.25671 0.94888 0.99393 0.98246 1.69950 1.36731 1.16900 1.31060 0.85623 0.78671 0.77996 0.79725 1.20252 1.21328 1.19281 1.21282 1.02735 0.93195 0.94915 1.22238 1.05022 0.93345 0.96138 1.22969 0.93162 1.03568 1.01383 1.23063 0.96540 1.00848 1.01365 0.85101 0.92269 0.92445 0.89830 0.90565 0.73525 0.84872 0.84029 0.94742 0.91112 0.93908 0.94337 0.91093 0.94753 0.92951 0.88180 0.90881 0.86742 0.89719 0.88398 0.88147 0.88769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.51 16 2 O -0.34 -5.23 8.44 -51.39 -0.43 -5.67 16 3 C 0.47 9.36 7.24 71.24 0.52 9.88 16 4 O -0.54 -14.60 15.67 21.98 0.34 -14.26 16 5 C -0.08 -1.26 2.39 -11.54 -0.03 -1.29 16 6 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 7 C 0.12 2.68 4.88 86.38 0.42 3.10 16 8 N -1.11 -25.60 5.74 -187.50 -1.08 -26.67 16 9 S 2.62 91.17 4.49 -56.49 -0.25 90.91 16 10 O -0.99 -38.84 15.70 -127.65 -2.00 -40.85 16 11 O -0.99 -40.76 15.11 -127.65 -1.93 -42.69 16 12 C -0.59 -21.88 5.02 71.98 0.36 -21.51 16 13 C 0.07 3.34 0.52 -52.93 -0.03 3.31 16 14 C -0.16 -7.91 7.78 71.98 0.56 -7.35 16 15 C -0.16 -8.06 7.77 71.98 0.56 -7.50 16 16 C -0.52 -27.06 8.01 25.60 0.21 -26.85 16 17 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 18 C 0.02 0.93 5.15 84.65 0.44 1.36 16 19 N -0.91 -50.54 9.35 21.45 0.20 -50.34 16 20 Si 0.95 42.40 29.54 68.60 2.03 44.43 16 21 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 C -0.08 -1.06 4.88 30.60 0.15 -0.91 16 25 C -0.15 -1.68 4.12 -10.79 -0.04 -1.73 16 26 C -0.17 -1.95 9.67 30.62 0.30 -1.65 16 27 C -0.18 -1.91 10.25 30.62 0.31 -1.59 16 28 H 0.13 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 30 H 0.06 0.74 8.13 -2.38 -0.02 0.72 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 1.99 7.50 -2.39 -0.02 1.97 16 33 H 0.43 7.32 7.34 -96.74 -0.71 6.61 16 34 H 0.13 4.50 8.14 -2.39 -0.02 4.48 16 35 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 36 H 0.03 1.61 5.46 -2.39 -0.01 1.59 16 37 H 0.07 3.83 6.07 -2.38 -0.01 3.81 16 38 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.07 3.88 6.07 -2.39 -0.01 3.87 16 41 H 0.03 1.63 5.47 -2.39 -0.01 1.62 16 42 H 0.26 13.93 8.31 -92.70 -0.77 13.16 16 43 H 0.10 1.05 6.79 -2.38 -0.02 1.03 16 44 H 0.07 0.98 7.88 -2.39 -0.02 0.96 16 45 H 0.11 1.20 8.03 -2.39 -0.02 1.18 16 46 H 0.08 1.04 8.03 -2.39 -0.02 1.02 16 47 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 Total: -1.00 -71.50 395.95 2.03 -69.47 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.24 Total: 26.89 kcal Atomic # 6 Polarization: -56.14 SS G_CDS: 4.91 Total: -51.23 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -0.88 Total: -77.01 kcal Atomic # 8 Polarization: -99.44 SS G_CDS: -4.02 Total: -103.46 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: 91.17 SS G_CDS: -0.25 Total: 90.91 kcal Total: -71.50 2.03 -69.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583698109.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.513 kcal (2) G-P(sol) polarization free energy of solvation -71.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds