Wall clock time and date at job start Wed Apr 1 2020 05:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46965 * 2 1 4 4 C 1.50697 * 109.47323 * 120.00282 * 2 1 3 5 5 O 1.21276 * 119.99836 * 359.97438 * 4 2 1 6 6 N 1.34776 * 119.99838 * 179.97438 * 4 2 1 7 7 C 1.39421 * 119.99731 * 174.92724 * 6 4 2 8 8 C 1.39016 * 119.63617 * 185.08096 * 7 6 4 9 9 C 1.39553 * 118.93851 * 180.24812 * 8 7 6 10 10 C 1.48162 * 120.88702 * 179.77956 * 9 8 7 11 11 O 1.21509 * 120.00091 * 7.29812 * 10 9 8 12 12 N 1.34774 * 120.00120 * 187.29053 * 10 9 8 13 13 C 1.47424 * 125.65378 * 175.02419 * 12 10 9 14 14 C 1.55383 * 104.88031 * 204.17284 * 13 12 10 15 15 C 1.55162 * 101.36232 * 323.01802 * 14 13 12 16 16 O 1.42905 * 110.71657 * 277.04092 * 15 14 13 17 17 C 1.50698 * 110.72063 * 153.94676 * 15 14 13 18 18 H 1.08005 * 120.00133 * 2.44330 * 17 15 14 19 19 C 1.37870 * 120.00183 * 182.43697 * 17 15 14 20 20 N 1.31522 * 120.00014 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 120.00343 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46962 * 90.00239 * 21 19 17 23 23 H 1.48502 * 109.47169 * 210.00337 * 21 19 17 24 24 H 1.48502 * 109.46799 * 330.00306 * 21 19 17 25 25 C 1.47026 * 125.64612 * 355.07189 * 12 10 9 26 26 C 1.39974 * 118.22612 * 359.51032 * 9 8 7 27 27 C 1.38006 * 119.15574 * 0.25210 * 26 9 8 28 28 N 1.31884 * 120.98837 * 359.97438 * 27 26 9 29 29 H 1.09009 * 109.46930 * 299.99776 * 1 2 3 30 30 H 1.08996 * 109.47635 * 59.99239 * 1 2 3 31 31 H 1.09001 * 109.47213 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46985 * 240.00660 * 2 1 3 33 33 H 1.09003 * 109.46883 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47169 * 300.00009 * 3 2 1 35 35 H 1.08997 * 109.47083 * 60.00780 * 3 2 1 36 36 H 0.96997 * 119.99841 * 354.93423 * 6 4 2 37 37 H 1.08008 * 120.53014 * 0.02562 * 8 7 6 38 38 H 1.09001 * 110.36082 * 323.01035 * 13 12 10 39 39 H 1.08996 * 110.36542 * 85.21205 * 13 12 10 40 40 H 1.08996 * 111.18853 * 204.97993 * 14 13 12 41 41 H 1.08995 * 111.02238 * 80.98013 * 14 13 12 42 42 H 0.96696 * 113.99723 * 177.56253 * 16 15 14 43 43 H 0.96995 * 119.99874 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.88509 * 59.48580 * 25 12 10 45 45 H 1.09001 * 110.00746 * 298.39089 * 25 12 10 46 46 H 1.07996 * 120.42618 * 180.22422 * 26 9 8 47 47 H 1.08001 * 119.50549 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.2443 -1.1710 2.0289 6 7 3.3575 -0.8340 1.4433 7 6 3.8231 -1.3965 2.6310 8 6 5.1888 -1.4240 2.8895 9 6 5.6392 -1.9952 4.0804 10 6 7.0854 -2.0518 4.3975 11 8 7.8867 -1.4820 3.6836 12 7 7.5121 -2.7351 5.4780 13 6 8.9205 -2.9598 5.8515 14 6 8.9014 -4.2446 6.7253 15 6 7.5754 -4.0610 7.5098 16 8 7.7730 -3.2173 8.6462 17 6 7.0154 -5.3955 7.9300 18 1 7.5576 -6.3028 7.7081 19 6 5.8108 -5.4583 8.5978 20 7 5.1502 -4.3535 8.8678 21 14 5.1169 -7.1124 9.1193 22 1 5.6059 -7.4472 10.4809 23 1 3.6334 -7.0462 9.1284 24 1 5.5599 -8.1586 8.1630 25 6 6.6502 -3.3808 6.4789 26 6 4.6879 -2.5080 4.9700 27 6 3.3502 -2.4363 4.6387 28 7 2.9603 -1.8933 3.5018 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.9871 -0.5315 0.7703 37 1 5.8902 -1.0130 2.1784 38 1 9.5288 -3.1164 4.9607 39 1 9.3002 -2.1146 6.4254 40 1 9.7552 -4.2733 7.4022 41 1 8.8671 -5.1395 6.1040 42 1 6.9666 -3.0405 9.1496 43 1 4.3030 -4.3976 9.3379 44 1 6.0187 -4.1277 5.9979 45 1 6.0294 -2.6339 6.9739 46 1 4.9969 -2.9546 5.9035 47 1 2.6114 -2.8306 5.3208 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592854736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:12 Heat of formation + Delta-G solvation = -54.925408 kcal Electronic energy + Delta-G solvation = -30816.133792 eV Core-core repulsion = 26579.072173 eV Total energy + Delta-G solvation = -4237.061619 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.97312 -39.93249 -38.75061 -37.35516 -35.06124 -34.74735 -34.34857 -32.56715 -32.30216 -30.57717 -29.71765 -27.99575 -27.43468 -25.77410 -24.82092 -24.18551 -22.94005 -22.01135 -20.35495 -19.79712 -19.38890 -18.11695 -17.39597 -17.15322 -16.50166 -16.04217 -15.77591 -15.42190 -15.09918 -14.98276 -14.77998 -14.53654 -14.39557 -14.18041 -13.86406 -13.59779 -13.16490 -13.10050 -13.06273 -12.86434 -12.64765 -12.35342 -12.23691 -11.79875 -11.70152 -11.57984 -11.52516 -11.41029 -11.10686 -10.80596 -10.75100 -10.67619 -10.54150 -10.31727 -10.18472 -9.83388 -9.65619 -9.43142 -9.00579 -8.78348 -8.38188 -8.25719 -8.07996 -6.43657 -4.51816 0.96738 1.18175 2.53934 2.67922 3.13503 3.22462 3.23865 3.24714 3.40960 4.08918 4.16481 4.18351 4.47668 4.60519 4.66463 4.75985 4.85440 5.01689 5.03699 5.18264 5.25373 5.30555 5.35932 5.49011 5.50908 5.58686 5.63585 5.71982 5.78306 5.78492 5.83425 5.95421 5.97270 6.10501 6.23174 6.25534 6.36672 6.51201 6.64425 6.73049 6.80689 6.92821 7.08131 7.16349 7.59914 7.82453 7.93230 8.01077 8.25700 8.44085 8.53994 9.17147 9.27454 10.64182 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.002840 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.053863 B = 9858.263009 C =11445.276280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 C -0.146 4.146 4 C 0.504 3.496 5 O -0.470 6.470 6 N -0.662 5.662 7 C 0.342 3.658 8 C -0.153 4.153 9 C -0.055 4.055 10 C 0.566 3.434 11 O -0.555 6.555 12 N -0.599 5.599 13 C 0.110 3.890 14 C -0.118 4.118 15 C 0.247 3.753 16 O -0.583 6.583 17 C -0.536 4.536 18 H 0.068 0.932 19 C 0.072 3.928 20 N -0.899 5.899 21 Si 0.903 3.097 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.272 1.272 25 C 0.078 3.922 26 C -0.195 4.195 27 C 0.127 3.873 28 N -0.466 5.466 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.416 0.584 37 H 0.143 0.857 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.384 0.616 43 H 0.272 0.728 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.188 0.812 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.558 7.699 -14.490 17.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 C -0.204 4.204 4 C 0.289 3.711 5 O -0.338 6.338 6 N -0.309 5.309 7 C 0.112 3.888 8 C -0.178 4.178 9 C -0.066 4.066 10 C 0.355 3.645 11 O -0.435 6.435 12 N -0.330 5.330 13 C -0.012 4.012 14 C -0.156 4.156 15 C 0.207 3.793 16 O -0.392 6.392 17 C -0.574 4.574 18 H 0.086 0.914 19 C -0.131 4.131 20 N -0.539 5.539 21 Si 0.730 3.270 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.197 1.197 25 C -0.043 4.043 26 C -0.215 4.215 27 C -0.030 4.030 28 N -0.181 5.181 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.252 0.748 37 H 0.161 0.839 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.235 0.765 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.204 0.796 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.252 7.829 -14.703 17.466 hybrid contribution 0.105 -0.725 0.352 0.813 sum -5.148 7.104 -14.351 16.820 Atomic orbital electron populations 1.21626 0.92154 1.03061 1.02268 1.21338 0.98658 0.97233 0.96197 1.21815 1.01267 0.94107 1.03174 1.20961 0.81608 0.80162 0.88321 1.90821 1.54114 1.43642 1.45206 1.43584 1.08681 1.60980 1.17658 1.18256 0.88431 0.94358 0.87762 1.21446 0.94095 1.03391 0.98823 1.20061 0.93861 0.98073 0.94625 1.17791 0.87256 0.79153 0.80345 1.90701 1.55851 1.46252 1.50719 1.48621 1.09397 1.51282 1.23683 1.22344 0.81873 0.98617 0.98410 1.22871 0.99648 0.95579 0.97532 1.19531 0.88770 0.88391 0.82634 1.86137 1.39398 1.70973 1.42690 1.21545 1.05443 0.92512 1.37924 0.91372 1.25046 0.96196 0.97438 0.94429 1.69607 1.16302 1.26999 1.40948 0.86401 0.78116 0.83261 0.79200 1.20355 1.20858 1.19709 1.23636 0.94627 0.96392 0.89695 1.24058 0.93995 1.00019 1.03425 1.22731 0.94629 0.93662 0.92008 1.67461 1.37505 1.10068 1.03061 0.91758 0.91903 0.91790 0.88359 0.92077 0.91176 0.91864 0.74796 0.83884 0.91460 0.91470 0.90183 0.90374 0.76473 0.91752 0.90131 0.90296 0.79599 0.81756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 8.48 37.16 0.32 -0.75 16 2 C -0.11 -0.87 3.25 -91.77 -0.30 -1.16 16 3 C -0.15 -0.88 9.10 37.16 0.34 -0.54 16 4 C 0.50 6.15 7.11 -10.99 -0.08 6.07 16 5 O -0.47 -7.85 14.24 5.56 0.08 -7.77 16 6 N -0.66 -7.57 5.24 -11.44 -0.06 -7.63 16 7 C 0.34 5.19 7.42 -154.76 -1.15 4.04 16 8 C -0.15 -2.34 9.51 -38.80 -0.37 -2.71 16 9 C -0.06 -0.96 5.90 -104.68 -0.62 -1.58 16 10 C 0.57 11.02 7.83 -12.19 -0.10 10.93 16 11 O -0.55 -11.66 16.76 5.36 0.09 -11.57 16 12 N -0.60 -11.70 3.33 -171.46 -0.57 -12.27 16 13 C 0.11 2.02 6.89 -2.27 -0.02 2.00 16 14 C -0.12 -2.26 6.26 -24.32 -0.15 -2.41 16 15 C 0.25 5.45 0.85 -89.94 -0.08 5.37 16 16 O -0.58 -13.61 13.08 -35.23 -0.46 -14.07 16 17 C -0.54 -12.78 8.11 -34.44 -0.28 -13.06 16 18 H 0.07 1.63 7.77 -52.48 -0.41 1.22 16 19 C 0.07 1.70 5.27 -17.82 -0.09 1.60 16 20 N -0.90 -21.13 10.96 55.43 0.61 -20.52 16 21 Si 0.90 19.01 29.54 -169.99 -5.02 13.99 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 25 C 0.08 1.60 3.39 -3.06 -0.01 1.59 16 26 C -0.19 -3.35 8.67 -39.02 -0.34 -3.69 16 27 C 0.13 2.10 11.17 -17.61 -0.20 1.90 16 28 N -0.47 -8.07 7.86 -12.41 -0.10 -8.17 16 29 H 0.06 0.60 8.10 -51.92 -0.42 0.18 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 32 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.31 7.69 -51.93 -0.40 -0.09 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.42 3.10 8.28 -40.82 -0.34 2.77 16 37 H 0.14 1.91 7.76 -52.48 -0.41 1.51 16 38 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.08 1.43 8.04 -51.93 -0.42 1.01 16 42 H 0.38 9.07 7.23 45.56 0.33 9.40 16 43 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 44 H 0.08 1.70 6.36 -51.93 -0.33 1.37 16 45 H 0.08 1.68 6.67 -51.93 -0.35 1.33 16 46 H 0.19 3.41 2.96 -52.81 -0.16 3.26 16 47 H 0.17 2.41 8.06 -52.49 -0.42 1.98 16 LS Contribution 383.79 15.07 5.78 5.78 Total: -1.00 -29.96 383.79 -8.60 -38.56 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -5.83 Total: 16.07 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -3.12 Total: 7.61 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.12 Total: -48.59 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -0.29 Total: -33.41 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.96 -8.60 -38.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.367 kcal (2) G-P(sol) polarization free energy of solvation -29.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds