Wall clock time and date at job start Wed Apr 1 2020 05:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47453 * 2 1 4 4 C 1.50701 * 109.47075 * 120.00377 * 2 1 3 5 5 H 1.08003 * 120.00064 * 125.42177 * 4 2 1 6 6 C 1.37877 * 119.99628 * 305.41563 * 4 2 1 7 7 N 1.31523 * 119.99587 * 150.83709 * 6 4 2 8 8 Si 1.86793 * 120.00262 * 330.55948 * 6 4 2 9 9 H 1.48504 * 109.47083 * 180.27463 * 8 6 4 10 10 H 1.48499 * 109.47322 * 300.27434 * 8 6 4 11 11 H 1.48499 * 109.46935 * 60.27806 * 8 6 4 12 12 C 1.53004 * 109.47235 * 239.99870 * 2 1 3 13 13 S 1.81408 * 109.46678 * 60.00174 * 12 2 1 14 14 O 1.42092 * 110.54590 * 291.62540 * 13 12 2 15 15 O 1.42105 * 110.54122 * 68.37692 * 13 12 2 16 16 N 1.65598 * 104.44651 * 179.97438 * 13 12 2 17 17 C 1.46499 * 120.00088 * 65.00549 * 16 13 12 18 18 H 1.08996 * 109.48022 * 25.00943 * 17 16 13 19 19 C 1.53031 * 109.47392 * 264.99581 * 17 16 13 20 20 C 1.52995 * 109.46078 * 180.22053 * 19 17 16 21 21 C 1.52991 * 109.51857 * 60.14482 * 20 19 17 22 22 C 1.53022 * 109.46428 * 299.85845 * 21 20 19 23 23 C 1.52951 * 109.43464 * 59.78670 * 22 21 20 24 24 O 1.43711 * 109.40824 * 60.39304 * 23 22 21 25 25 C 1.44795 * 104.79198 * 95.51920 * 24 23 22 26 26 C 1.54923 * 101.72537 * 36.06354 * 25 24 23 27 27 O 1.43292 * 109.66068 * 179.71995 * 23 22 21 28 28 H 1.08996 * 109.47108 * 292.47785 * 1 2 3 29 29 H 1.09006 * 109.46888 * 52.47396 * 1 2 3 30 30 H 1.09000 * 109.47793 * 172.47288 * 1 2 3 31 31 H 1.08998 * 109.47194 * 183.38288 * 3 2 1 32 32 H 1.08998 * 109.47519 * 303.38815 * 3 2 1 33 33 H 1.09002 * 109.47170 * 63.38660 * 3 2 1 34 34 H 0.96998 * 119.99833 * 354.68590 * 7 6 4 35 35 H 1.08998 * 109.47266 * 179.97438 * 12 2 1 36 36 H 1.08996 * 109.47447 * 300.00880 * 12 2 1 37 37 H 0.97006 * 120.00312 * 244.99646 * 16 13 12 38 38 H 1.08999 * 109.47197 * 300.21718 * 19 17 16 39 39 H 1.09000 * 109.46910 * 60.22743 * 19 17 16 40 40 H 1.09000 * 109.46343 * 180.15607 * 20 19 17 41 41 H 1.08991 * 109.46776 * 300.12541 * 20 19 17 42 42 H 1.09006 * 109.47275 * 59.85288 * 21 20 19 43 43 H 1.09001 * 109.47592 * 179.85514 * 21 20 19 44 44 H 1.09001 * 109.47468 * 179.77433 * 22 21 20 45 45 H 1.09000 * 109.47568 * 299.78470 * 22 21 20 46 46 H 1.09002 * 110.97830 * 277.95436 * 25 24 23 47 47 H 1.08996 * 110.97725 * 154.16775 * 25 24 23 48 48 H 1.09001 * 110.69054 * 206.07803 * 26 25 24 49 49 H 1.08999 * 110.69397 * 82.87323 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.7234 -1.5348 1.1337 6 6 1.6096 -0.3081 2.4796 7 7 1.5404 -1.1792 3.4626 8 14 1.1427 1.4758 2.7779 9 1 0.7318 1.6497 4.1943 10 1 2.3099 2.3477 2.4905 11 1 0.0152 1.8481 1.8862 12 6 2.0400 -0.7213 -1.2492 13 16 1.4353 0.1340 -2.7304 14 8 0.0280 -0.0181 -2.8544 15 8 2.0480 1.4101 -2.8543 16 7 2.0541 -0.7399 -3.9936 17 6 1.6253 -2.1245 -4.2061 18 1 0.6364 -2.2696 -3.7712 19 6 2.6210 -3.0752 -3.5379 20 6 2.1759 -4.5213 -3.7647 21 6 2.1275 -4.8118 -5.2660 22 6 1.1311 -3.8639 -5.9369 23 6 1.5707 -2.4171 -5.7064 24 8 2.8732 -2.2167 -6.2797 25 6 2.6178 -1.6656 -7.5941 26 6 1.3790 -0.7745 -7.3265 27 8 0.6443 -1.5252 -6.3384 28 1 -0.3633 0.3929 0.9496 29 1 -0.3633 0.6260 -0.8151 30 1 -0.3635 -1.0188 -0.1346 31 1 3.1283 1.4430 -0.0606 32 1 1.6280 1.9736 -0.8580 33 1 1.7271 1.9385 0.9188 34 1 1.7120 -2.1184 3.2912 35 1 3.1299 -0.7209 -1.2495 36 1 1.6766 -1.7489 -1.2494 37 1 2.7004 -0.3350 -4.5930 38 1 3.6106 -2.9276 -3.9704 39 1 2.6576 -2.8698 -2.4681 40 1 2.8837 -5.1984 -3.2864 41 1 1.1855 -4.6682 -3.3342 42 1 3.1176 -4.6627 -5.6970 43 1 1.8128 -5.8430 -5.4267 44 1 1.0995 -4.0680 -7.0072 45 1 0.1404 -4.0155 -5.5086 46 1 2.3840 -2.4542 -8.3093 47 1 3.4619 -1.0674 -7.9371 48 1 0.7889 -0.6525 -8.2348 49 1 1.6802 0.1945 -6.9285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830918793.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:37 Heat of formation + Delta-G solvation = -159.462357 kcal Electronic energy + Delta-G solvation = -31817.591836 eV Core-core repulsion = 27679.148355 eV Total energy + Delta-G solvation = -4138.443481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.22645 -37.53953 -36.63825 -36.58264 -35.43133 -35.24184 -34.27118 -32.01318 -30.87227 -29.54186 -27.55944 -27.33577 -26.32427 -24.51356 -23.64652 -22.81383 -22.24984 -20.11129 -19.76453 -18.75488 -17.82668 -17.41288 -17.20130 -16.80666 -16.16675 -15.65331 -15.47734 -15.22634 -14.81904 -14.68667 -14.38545 -13.98174 -13.81621 -13.43521 -13.33431 -13.20959 -13.05612 -12.90436 -12.78211 -12.51651 -12.34983 -12.02978 -11.87613 -11.68981 -11.62198 -11.53388 -11.45119 -11.28857 -11.12309 -10.99623 -10.89175 -10.72542 -10.50958 -10.43680 -10.15481 -9.93368 -9.92104 -9.77279 -9.24841 -9.01702 -8.89892 -8.15156 -6.56022 -4.12953 0.75026 3.04385 3.12036 3.37080 3.42452 3.59183 3.63048 4.19398 4.22763 4.33799 4.45099 4.47440 4.59687 4.72809 4.75476 4.80242 4.90116 4.96045 5.05552 5.07273 5.12772 5.17047 5.32483 5.34115 5.44192 5.48114 5.55783 5.57631 5.67137 5.71995 5.84599 5.93881 5.99260 6.03117 6.11642 6.23374 6.30108 6.35685 6.49004 6.54240 6.75101 6.85204 6.91309 7.09213 7.19491 7.37244 8.03283 8.29877 8.80759 9.49007 10.79227 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018988 B = 0.003756 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.255467 B = 7452.921987 C = 8318.274091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.060 3.940 3 C -0.180 4.180 4 C -0.601 4.601 5 H 0.062 0.938 6 C 0.046 3.954 7 N -0.884 5.884 8 Si 1.037 2.963 9 H -0.296 1.296 10 H -0.283 1.283 11 H -0.273 1.273 12 C -0.574 4.574 13 S 2.588 3.412 14 O -0.959 6.959 15 O -0.966 6.966 16 N -1.115 6.115 17 C 0.153 3.847 18 H 0.107 0.893 19 C -0.145 4.145 20 C -0.122 4.122 21 C -0.114 4.114 22 C -0.136 4.136 23 C 0.259 3.741 24 O -0.361 6.361 25 C 0.013 3.987 26 C 0.017 3.983 27 O -0.366 6.366 28 H 0.066 0.934 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.272 0.728 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.412 0.588 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.109 0.891 48 H 0.099 0.901 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.286 -5.651 -22.665 23.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.057 3.943 3 C -0.237 4.237 4 C -0.639 4.639 5 H 0.080 0.920 6 C -0.162 4.162 7 N -0.515 5.515 8 Si 0.869 3.131 9 H -0.224 1.224 10 H -0.211 1.211 11 H -0.201 1.201 12 C -0.707 4.707 13 S 2.686 3.314 14 O -0.949 6.949 15 O -0.957 6.957 16 N -0.871 5.871 17 C 0.044 3.956 18 H 0.125 0.875 19 C -0.184 4.184 20 C -0.160 4.160 21 C -0.152 4.152 22 C -0.175 4.175 23 C 0.181 3.819 24 O -0.281 6.281 25 C -0.063 4.063 26 C -0.059 4.059 27 O -0.286 6.286 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.246 0.754 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.093 0.907 47 H 0.127 0.873 48 H 0.117 0.883 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.108 -3.942 -21.329 21.718 hybrid contribution 1.279 -1.357 -1.406 2.336 sum 2.387 -5.299 -22.735 23.466 Atomic orbital electron populations 1.22617 0.97090 1.01451 1.01605 1.18181 0.92354 0.91556 0.92181 1.22773 1.02133 0.98202 1.00558 1.21568 1.32574 1.19760 0.90023 0.91964 1.25660 0.93282 1.04698 0.92544 1.70862 1.40832 1.03924 1.35910 0.84383 0.77197 0.76657 0.74836 1.22361 1.21066 1.20062 1.30504 1.11641 1.12782 1.15812 1.05769 0.75090 0.74787 0.75792 1.93561 1.29598 1.86331 1.85424 1.93550 1.78150 1.38113 1.85843 1.55675 1.60793 1.23264 1.47324 1.21111 0.99390 0.81596 0.93482 0.87485 1.22225 1.00085 0.94266 1.01822 1.21552 1.02364 0.96016 0.96058 1.21487 0.99688 0.98464 0.95538 1.22129 1.00802 0.92612 1.01957 1.23479 0.76594 0.90382 0.91468 1.89259 1.26401 1.84032 1.28445 1.24407 0.98858 0.96704 0.86352 1.24235 0.92876 0.96093 0.92714 1.88964 1.32850 1.53731 1.53084 0.91509 0.94375 0.92582 0.92018 0.93742 0.92940 0.91807 0.85843 0.85891 0.75433 0.90058 0.90104 0.90936 0.91306 0.91002 0.91308 0.90932 0.89751 0.90693 0.87305 0.88253 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.96 7.38 37.15 0.27 -3.68 16 2 C 0.06 1.41 0.52 -155.66 -0.08 1.33 16 3 C -0.18 -4.13 7.33 37.16 0.27 -3.86 16 4 C -0.60 -16.17 8.42 -34.44 -0.29 -16.46 16 5 H 0.06 1.75 7.99 -52.48 -0.42 1.34 16 6 C 0.05 1.30 5.04 -17.82 -0.09 1.21 16 7 N -0.88 -26.21 13.70 55.43 0.76 -25.45 16 8 Si 1.04 25.52 23.48 -169.99 -3.99 21.53 16 9 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 10 H -0.28 -6.61 6.72 56.52 0.38 -6.23 16 11 H -0.27 -6.29 5.81 56.52 0.33 -5.97 16 12 C -0.57 -10.92 4.16 37.16 0.15 -10.76 16 13 S 2.59 47.19 4.47 -107.50 -0.48 46.71 16 14 O -0.96 -19.82 15.18 -57.54 -0.87 -20.69 16 15 O -0.97 -19.63 15.77 -57.54 -0.91 -20.54 16 16 N -1.12 -15.88 5.22 -4.90 -0.03 -15.90 16 17 C 0.15 1.98 2.19 -67.94 -0.15 1.83 16 18 H 0.11 1.48 7.48 -51.93 -0.39 1.09 16 19 C -0.14 -1.65 5.35 -26.72 -0.14 -1.79 16 20 C -0.12 -1.16 5.92 -26.74 -0.16 -1.32 16 21 C -0.11 -0.96 5.78 -26.72 -0.15 -1.12 16 22 C -0.14 -1.28 5.29 -26.75 -0.14 -1.42 16 23 C 0.26 2.95 0.71 -26.78 -0.02 2.94 16 24 O -0.36 -3.73 9.14 -59.04 -0.54 -4.27 16 25 C 0.01 0.10 7.91 38.17 0.30 0.40 16 26 C 0.02 0.15 8.08 38.17 0.31 0.46 16 27 O -0.37 -4.61 10.73 -59.04 -0.63 -5.24 16 28 H 0.07 1.60 4.49 -51.93 -0.23 1.36 16 29 H 0.04 0.83 6.02 -51.93 -0.31 0.52 16 30 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.04 0.96 5.71 -51.93 -0.30 0.67 16 33 H 0.05 1.22 2.28 -51.93 -0.12 1.11 16 34 H 0.27 7.93 8.73 -40.82 -0.36 7.58 16 35 H 0.12 2.14 8.14 -51.92 -0.42 1.72 16 36 H 0.12 2.14 6.77 -51.93 -0.35 1.79 16 37 H 0.41 5.26 8.34 -34.47 -0.29 4.97 16 38 H 0.08 0.90 7.69 -51.93 -0.40 0.50 16 39 H 0.08 0.97 5.79 -51.93 -0.30 0.67 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.62 7.69 -51.93 -0.40 0.22 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 368.06 15.07 5.55 5.55 Total: -1.00 -33.80 368.06 -8.88 -42.68 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -7.83 Total: 7.86 kcal Atomic # 6 Polarization: -32.33 SS G_CDS: 0.09 Total: -32.24 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.73 Total: -41.35 kcal Atomic # 8 Polarization: -47.78 SS G_CDS: -2.95 Total: -50.74 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -3.99 Total: 21.53 kcal Atomic # 16 Polarization: 47.19 SS G_CDS: -0.48 Total: 46.71 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.80 -8.88 -42.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830918793.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.782 kcal (2) G-P(sol) polarization free energy of solvation -33.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds