Wall clock time and date at job start Wed Apr 1 2020 05:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47453 * 2 1 4 4 C 1.50701 * 109.47075 * 120.00377 * 2 1 3 5 5 H 1.08003 * 120.00064 * 125.42177 * 4 2 1 6 6 C 1.37877 * 119.99628 * 305.41563 * 4 2 1 7 7 N 1.31523 * 119.99587 * 150.83709 * 6 4 2 8 8 Si 1.86793 * 120.00262 * 330.55948 * 6 4 2 9 9 H 1.48504 * 109.47083 * 180.27463 * 8 6 4 10 10 H 1.48499 * 109.47322 * 300.27434 * 8 6 4 11 11 H 1.48499 * 109.46935 * 60.27806 * 8 6 4 12 12 C 1.53004 * 109.47235 * 239.99870 * 2 1 3 13 13 S 1.81408 * 109.46678 * 60.00174 * 12 2 1 14 14 O 1.42092 * 110.54590 * 291.62540 * 13 12 2 15 15 O 1.42105 * 110.54122 * 68.37692 * 13 12 2 16 16 N 1.65598 * 104.44651 * 179.97438 * 13 12 2 17 17 C 1.46499 * 120.00088 * 65.00549 * 16 13 12 18 18 H 1.08996 * 109.48022 * 25.00943 * 17 16 13 19 19 C 1.53031 * 109.47392 * 264.99581 * 17 16 13 20 20 C 1.52995 * 109.46078 * 180.22053 * 19 17 16 21 21 C 1.52991 * 109.51857 * 60.14482 * 20 19 17 22 22 C 1.53022 * 109.46428 * 299.85845 * 21 20 19 23 23 C 1.52951 * 109.43464 * 59.78670 * 22 21 20 24 24 O 1.43711 * 109.40824 * 60.39304 * 23 22 21 25 25 C 1.44795 * 104.79198 * 95.51920 * 24 23 22 26 26 C 1.54923 * 101.72537 * 36.06354 * 25 24 23 27 27 O 1.43292 * 109.66068 * 179.71995 * 23 22 21 28 28 H 1.08996 * 109.47108 * 292.47785 * 1 2 3 29 29 H 1.09006 * 109.46888 * 52.47396 * 1 2 3 30 30 H 1.09000 * 109.47793 * 172.47288 * 1 2 3 31 31 H 1.08998 * 109.47194 * 183.38288 * 3 2 1 32 32 H 1.08998 * 109.47519 * 303.38815 * 3 2 1 33 33 H 1.09002 * 109.47170 * 63.38660 * 3 2 1 34 34 H 0.96998 * 119.99833 * 354.68590 * 7 6 4 35 35 H 1.08998 * 109.47266 * 179.97438 * 12 2 1 36 36 H 1.08996 * 109.47447 * 300.00880 * 12 2 1 37 37 H 0.97006 * 120.00312 * 244.99646 * 16 13 12 38 38 H 1.08999 * 109.47197 * 300.21718 * 19 17 16 39 39 H 1.09000 * 109.46910 * 60.22743 * 19 17 16 40 40 H 1.09000 * 109.46343 * 180.15607 * 20 19 17 41 41 H 1.08991 * 109.46776 * 300.12541 * 20 19 17 42 42 H 1.09006 * 109.47275 * 59.85288 * 21 20 19 43 43 H 1.09001 * 109.47592 * 179.85514 * 21 20 19 44 44 H 1.09001 * 109.47468 * 179.77433 * 22 21 20 45 45 H 1.09000 * 109.47568 * 299.78470 * 22 21 20 46 46 H 1.09002 * 110.97830 * 277.95436 * 25 24 23 47 47 H 1.08996 * 110.97725 * 154.16775 * 25 24 23 48 48 H 1.09001 * 110.69054 * 206.07803 * 26 25 24 49 49 H 1.08999 * 110.69397 * 82.87323 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.7234 -1.5348 1.1337 6 6 1.6096 -0.3081 2.4796 7 7 1.5404 -1.1792 3.4626 8 14 1.1427 1.4758 2.7779 9 1 0.7318 1.6497 4.1943 10 1 2.3099 2.3477 2.4905 11 1 0.0152 1.8481 1.8862 12 6 2.0400 -0.7213 -1.2492 13 16 1.4353 0.1340 -2.7304 14 8 0.0280 -0.0181 -2.8544 15 8 2.0480 1.4101 -2.8543 16 7 2.0541 -0.7399 -3.9936 17 6 1.6253 -2.1245 -4.2061 18 1 0.6364 -2.2696 -3.7712 19 6 2.6210 -3.0752 -3.5379 20 6 2.1759 -4.5213 -3.7647 21 6 2.1275 -4.8118 -5.2660 22 6 1.1311 -3.8639 -5.9369 23 6 1.5707 -2.4171 -5.7064 24 8 2.8732 -2.2167 -6.2797 25 6 2.6178 -1.6656 -7.5941 26 6 1.3790 -0.7745 -7.3265 27 8 0.6443 -1.5252 -6.3384 28 1 -0.3633 0.3929 0.9496 29 1 -0.3633 0.6260 -0.8151 30 1 -0.3635 -1.0188 -0.1346 31 1 3.1283 1.4430 -0.0606 32 1 1.6280 1.9736 -0.8580 33 1 1.7271 1.9385 0.9188 34 1 1.7120 -2.1184 3.2912 35 1 3.1299 -0.7209 -1.2495 36 1 1.6766 -1.7489 -1.2494 37 1 2.7004 -0.3350 -4.5930 38 1 3.6106 -2.9276 -3.9704 39 1 2.6576 -2.8698 -2.4681 40 1 2.8837 -5.1984 -3.2864 41 1 1.1855 -4.6682 -3.3342 42 1 3.1176 -4.6627 -5.6970 43 1 1.8128 -5.8430 -5.4267 44 1 1.0995 -4.0680 -7.0072 45 1 0.1404 -4.0155 -5.5086 46 1 2.3840 -2.4542 -8.3093 47 1 3.4619 -1.0674 -7.9371 48 1 0.7889 -0.6525 -8.2348 49 1 1.6802 0.1945 -6.9285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830918793.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:37 Heat of formation + Delta-G solvation = -185.045393 kcal Electronic energy + Delta-G solvation = -31818.701200 eV Core-core repulsion = 27679.148355 eV Total energy + Delta-G solvation = -4139.552845 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.00627 -38.49275 -38.43014 -38.06922 -37.00349 -36.04531 -35.26770 -34.12275 -31.59701 -30.38707 -28.97257 -28.37480 -28.16111 -26.60974 -24.30695 -23.66763 -23.07985 -21.61866 -20.91120 -20.20592 -19.18066 -18.74764 -18.31909 -18.13035 -17.12333 -17.10722 -16.62571 -16.42674 -16.20999 -15.76207 -15.27806 -15.14135 -14.92920 -14.80859 -14.69823 -14.48870 -14.22332 -14.15673 -13.97190 -13.91600 -13.70271 -13.41975 -13.20932 -13.12422 -13.01209 -12.83661 -12.69050 -12.52908 -12.43942 -12.26339 -12.04373 -12.00634 -11.81575 -11.75946 -11.60410 -11.45650 -11.11087 -11.01230 -10.82485 -10.76819 -10.30174 -10.19173 -8.75354 -6.32276 -0.73050 1.42185 1.44970 1.68084 1.72996 2.40761 2.43290 2.71226 2.80573 2.93971 3.20385 3.45710 3.67275 3.69261 3.78845 3.92910 3.95316 4.05628 4.07069 4.12418 4.19886 4.24371 4.24986 4.39720 4.47526 4.54260 4.58342 4.60999 4.62957 4.68957 4.71558 4.74761 4.86323 4.93627 4.94970 5.00215 5.09758 5.12604 5.18266 5.23332 5.27434 5.38951 5.49379 5.52713 5.98189 6.00551 6.08353 6.10819 6.59287 7.35403 8.58762 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018988 B = 0.003756 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.255467 B = 7452.921987 C = 8318.274091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.049 3.951 3 C -0.186 4.186 4 C -0.596 4.596 5 H 0.039 0.961 6 C 0.003 3.997 7 N -0.918 5.918 8 Si 1.059 2.941 9 H -0.301 1.301 10 H -0.263 1.263 11 H -0.250 1.250 12 C -0.580 4.580 13 S 2.611 3.389 14 O -0.983 6.983 15 O -0.985 6.985 16 N -1.101 6.101 17 C 0.142 3.858 18 H 0.094 0.906 19 C -0.143 4.143 20 C -0.124 4.124 21 C -0.108 4.108 22 C -0.135 4.135 23 C 0.259 3.741 24 O -0.371 6.371 25 C 0.014 3.986 26 C 0.006 3.994 27 O -0.394 6.394 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.262 0.738 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.421 0.579 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.094 0.906 47 H 0.131 0.869 48 H 0.122 0.878 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.787 -5.614 -25.256 26.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.047 3.953 3 C -0.243 4.243 4 C -0.634 4.634 5 H 0.057 0.943 6 C -0.199 4.199 7 N -0.551 5.551 8 Si 0.886 3.114 9 H -0.230 1.230 10 H -0.189 1.189 11 H -0.176 1.176 12 C -0.711 4.711 13 S 2.708 3.292 14 O -0.973 6.973 15 O -0.976 6.976 16 N -0.860 5.860 17 C 0.034 3.966 18 H 0.112 0.888 19 C -0.183 4.183 20 C -0.162 4.162 21 C -0.145 4.145 22 C -0.174 4.174 23 C 0.181 3.819 24 O -0.292 6.292 25 C -0.062 4.062 26 C -0.070 4.070 27 O -0.315 6.315 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.257 0.743 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.098 0.902 46 H 0.112 0.888 47 H 0.149 0.851 48 H 0.140 0.860 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.624 -3.898 -23.939 24.309 hybrid contribution 1.166 -1.427 -0.716 1.977 sum 2.790 -5.325 -24.655 25.378 Atomic orbital electron populations 1.22622 0.97078 1.01855 1.01513 1.18166 0.92456 0.92149 0.92562 1.22806 1.02844 0.97689 1.00941 1.21722 1.31294 1.18846 0.91587 0.94305 1.26688 0.93319 1.07101 0.92814 1.70959 1.43680 1.03674 1.36830 0.84119 0.78669 0.73657 0.74934 1.22975 1.18913 1.17585 1.30489 1.12655 1.13161 1.14844 1.04833 0.74355 0.74261 0.75755 1.93531 1.31304 1.86674 1.85815 1.93515 1.78339 1.39555 1.86170 1.55265 1.60816 1.23931 1.45960 1.21359 0.99105 0.80720 0.95455 0.88842 1.22211 0.99944 0.95198 1.00903 1.21595 1.02466 0.94822 0.97293 1.21458 0.99557 0.99207 0.94283 1.22147 1.00754 0.91433 1.03029 1.23463 0.77101 0.91264 0.90108 1.89236 1.25773 1.84270 1.29912 1.24638 0.98969 0.97157 0.85434 1.24491 0.93873 0.95758 0.92850 1.88943 1.34086 1.54409 1.54056 0.92469 0.93178 0.92408 0.91179 0.92543 0.93269 0.92904 0.84386 0.84812 0.74316 0.89590 0.91235 0.89977 0.91506 0.90843 0.89481 0.89405 0.90182 0.88818 0.85130 0.86025 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.92 7.38 71.98 0.53 -7.39 16 2 C 0.05 2.28 0.52 -52.93 -0.03 2.25 16 3 C -0.19 -8.24 7.33 71.98 0.53 -7.71 16 4 C -0.60 -32.26 8.42 25.60 0.22 -32.04 16 5 H 0.04 2.23 7.99 -2.91 -0.02 2.21 16 6 C 0.00 0.18 5.04 84.65 0.43 0.61 16 7 N -0.92 -55.62 13.70 21.45 0.29 -55.33 16 8 Si 1.06 50.70 23.48 68.60 1.61 52.31 16 9 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 10 H -0.26 -11.64 6.72 99.48 0.67 -10.97 16 11 H -0.25 -10.98 5.81 99.48 0.58 -10.40 16 12 C -0.58 -21.56 4.16 71.98 0.30 -21.26 16 13 S 2.61 92.34 4.47 -56.49 -0.25 92.09 16 14 O -0.98 -39.85 15.18 -127.65 -1.94 -41.79 16 15 O -0.99 -38.56 15.77 -127.65 -2.01 -40.57 16 16 N -1.10 -30.04 5.22 -169.41 -0.88 -30.93 16 17 C 0.14 3.52 2.19 44.99 0.10 3.61 16 18 H 0.09 2.56 7.48 -2.39 -0.02 2.55 16 19 C -0.14 -3.10 5.35 30.60 0.16 -2.93 16 20 C -0.12 -2.16 5.92 30.59 0.18 -1.98 16 21 C -0.11 -1.55 5.78 30.60 0.18 -1.37 16 22 C -0.14 -2.25 5.29 30.59 0.16 -2.09 16 23 C 0.26 5.46 0.71 30.56 0.02 5.48 16 24 O -0.37 -6.78 9.14 -126.22 -1.15 -7.93 16 25 C 0.01 0.16 7.91 72.64 0.57 0.74 16 26 C 0.01 0.10 8.08 72.64 0.59 0.68 16 27 O -0.39 -9.34 10.73 -126.22 -1.35 -10.70 16 28 H 0.06 2.68 4.49 -2.39 -0.01 2.67 16 29 H 0.05 2.14 6.02 -2.38 -0.01 2.13 16 30 H 0.06 2.55 8.13 -2.39 -0.02 2.53 16 31 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.06 2.34 5.71 -2.39 -0.01 2.33 16 33 H 0.05 2.19 2.28 -2.39 -0.01 2.19 16 34 H 0.26 15.81 8.73 -92.71 -0.81 15.00 16 35 H 0.14 4.66 8.14 -2.39 -0.02 4.64 16 36 H 0.13 4.62 6.77 -2.39 -0.02 4.60 16 37 H 0.42 10.12 8.34 -96.74 -0.81 9.32 16 38 H 0.09 1.76 7.69 -2.39 -0.02 1.74 16 39 H 0.07 1.63 5.79 -2.39 -0.01 1.62 16 40 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.07 1.06 7.69 -2.38 -0.02 1.04 16 43 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -72.25 368.06 -1.80 -74.05 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: -0.05 Total: 32.19 kcal Atomic # 6 Polarization: -67.34 SS G_CDS: 3.94 Total: -63.40 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -0.59 Total: -86.25 kcal Atomic # 8 Polarization: -94.52 SS G_CDS: -6.46 Total: -100.98 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 1.61 Total: 52.31 kcal Atomic # 16 Polarization: 92.34 SS G_CDS: -0.25 Total: 92.09 kcal Total: -72.25 -1.80 -74.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830918793.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.994 kcal (2) G-P(sol) polarization free energy of solvation -72.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds