Wall clock time and date at job start Wed Apr 1 2020 05:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46723 * 2 1 4 4 C 1.52997 * 109.47243 * 240.00490 * 2 1 3 5 5 O 1.45199 * 109.47644 * 120.00084 * 2 1 3 6 6 C 1.34636 * 116.99792 * 60.00104 * 5 2 1 7 7 O 1.21516 * 120.00019 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00026 * 180.02562 * 6 5 2 9 9 C 1.47582 * 134.49250 * 0.02562 * 8 6 5 10 10 C 1.53943 * 86.11915 * 204.63852 * 9 8 6 11 11 C 1.47587 * 134.49570 * 179.97438 * 8 6 5 12 12 H 1.09001 * 113.86751 * 269.68132 * 11 8 6 13 13 C 1.50701 * 113.76580 * 41.05958 * 11 8 6 14 14 O 1.21273 * 120.00018 * 356.49099 * 13 11 8 15 15 N 1.34772 * 119.99798 * 176.49800 * 13 11 8 16 16 C 1.39278 * 119.99759 * 185.36360 * 15 13 11 17 17 C 1.39668 * 119.56967 * 185.36361 * 16 15 13 18 18 C 1.38662 * 119.49163 * 180.02562 * 17 16 15 19 19 C 1.38342 * 118.67023 * 359.95813 * 18 17 16 20 20 C 1.40582 * 119.13059 * 0.02562 * 19 18 17 21 21 C 1.41333 * 119.79053 * 179.97438 * 20 19 18 22 22 H 1.08007 * 119.99523 * 354.68751 * 21 20 19 23 23 C 1.40025 * 120.00459 * 174.68952 * 21 20 19 24 24 N 1.30746 * 119.99372 * 354.69629 * 23 21 20 25 25 Si 1.86800 * 120.00311 * 174.69282 * 23 21 20 26 26 H 1.48495 * 109.46752 * 94.99680 * 25 23 21 27 27 H 1.48497 * 109.46918 * 214.99797 * 25 23 21 28 28 H 1.48506 * 109.46849 * 334.99978 * 25 23 21 29 29 N 1.31903 * 119.57232 * 5.33755 * 16 15 13 30 30 H 1.08997 * 109.47210 * 299.99348 * 1 2 3 31 31 H 1.09002 * 109.47137 * 60.00225 * 1 2 3 32 32 H 1.09006 * 109.46752 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46934 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47583 * 300.00055 * 3 2 1 35 35 H 1.09005 * 109.47079 * 60.00311 * 3 2 1 36 36 H 1.08995 * 109.47125 * 299.99245 * 4 2 1 37 37 H 1.09002 * 109.47638 * 59.99591 * 4 2 1 38 38 H 1.09010 * 109.47262 * 179.97438 * 4 2 1 39 39 H 1.08998 * 113.77098 * 90.33585 * 9 8 6 40 40 H 1.08995 * 113.86848 * 318.95267 * 9 8 6 41 41 H 1.09000 * 113.74547 * 222.05081 * 10 9 8 42 42 H 1.08998 * 113.84123 * 90.74793 * 10 9 8 43 43 H 0.96999 * 120.00473 * 5.36006 * 15 13 11 44 44 H 1.07995 * 120.25970 * 359.97438 * 17 16 15 45 45 H 1.08004 * 120.66489 * 179.97438 * 18 17 16 46 46 H 1.08003 * 120.43726 * 180.29523 * 19 18 17 47 47 H 0.97001 * 119.99577 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6524 -1.9723 1.3382 7 8 0.9517 -2.5097 0.5034 8 7 2.0674 -2.6654 2.4170 9 6 2.8993 -2.3470 3.5937 10 6 3.1933 -3.8565 3.6637 11 6 1.8718 -4.0474 2.8965 12 1 1.0026 -4.1713 3.5425 13 6 1.9466 -5.0850 1.8061 14 8 2.0881 -4.7421 0.6515 15 7 1.8561 -6.3939 2.1141 16 6 2.0367 -7.3564 1.1237 17 6 1.8305 -8.7041 1.4267 18 6 2.0113 -9.6611 0.4396 19 6 2.3923 -9.2472 -0.8243 20 6 2.5839 -7.8757 -1.0665 21 6 2.9737 -7.4374 -2.3523 22 1 3.2067 -8.1593 -3.1212 23 6 3.0578 -6.0675 -2.6296 24 7 2.6769 -5.1947 -1.7336 25 14 3.7143 -5.4869 -4.2792 26 1 2.5795 -5.2437 -5.2056 27 1 4.4792 -4.2279 -4.0922 28 1 4.6060 -6.5276 -4.8511 29 7 2.3998 -6.9832 -0.0882 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1298 1.4426 0.0005 34 1 1.6765 1.9565 -0.8900 35 1 1.6765 1.9564 0.8900 36 1 1.6768 -1.7488 -1.2493 37 1 1.6766 -0.2073 -2.1393 38 1 3.1301 -0.7207 -1.2495 39 1 2.3314 -1.9701 4.4442 40 1 3.7744 -1.7393 3.3637 41 1 3.1750 -4.2608 4.6758 42 1 4.0759 -4.1601 3.1007 43 1 1.6653 -6.6657 3.0255 44 1 1.5334 -8.9989 2.4222 45 1 1.8574 -10.7086 0.6531 46 1 2.5365 -9.9678 -1.6157 47 1 2.7349 -4.2457 -1.9258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882471667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:11 Heat of formation + Delta-G solvation = -8.195473 kcal Electronic energy + Delta-G solvation = -32206.784330 eV Core-core repulsion = 27971.749073 eV Total energy + Delta-G solvation = -4235.035257 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.72040 -39.58445 -38.45141 -36.88049 -36.07308 -34.01303 -33.78829 -32.92564 -30.27662 -29.73822 -29.00641 -27.36206 -27.18308 -26.93560 -25.37755 -22.93819 -22.32010 -21.29545 -20.66785 -19.67161 -18.78450 -17.97145 -17.44853 -16.80660 -16.37437 -16.00516 -15.47946 -14.98951 -14.60986 -14.46726 -14.35527 -14.16927 -13.94578 -13.83263 -13.49326 -13.04035 -12.82730 -12.64394 -12.60420 -12.42091 -12.12188 -12.02020 -11.81461 -11.75476 -11.67699 -11.60767 -11.33164 -11.16510 -11.07130 -11.00616 -10.89606 -10.60151 -10.41750 -10.10530 -9.90644 -9.61223 -9.52894 -8.98691 -8.93342 -8.45071 -7.90867 -7.15077 -6.88700 -6.09421 -4.32427 2.11405 2.83677 3.10867 3.20896 3.23377 3.30360 3.31731 3.62950 3.82565 4.05070 4.11816 4.34974 4.83302 4.84607 4.88532 4.97289 5.02281 5.04724 5.20649 5.29638 5.37861 5.48317 5.53468 5.60943 5.62259 5.74176 5.83240 5.91137 6.02928 6.07055 6.08579 6.10152 6.17716 6.41572 6.53848 6.67054 6.72839 6.79235 6.89399 6.90544 7.30800 7.60876 7.68422 7.86659 7.90535 8.12125 8.26529 8.52185 8.77398 8.82945 9.10967 9.34076 10.30586 10.54904 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009848 B = 0.004692 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.438783 B = 5966.096444 C = 8210.251851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.139 3.861 3 C -0.138 4.138 4 C -0.185 4.185 5 O -0.369 6.369 6 C 0.668 3.332 7 O -0.522 6.522 8 N -0.618 5.618 9 C 0.110 3.890 10 C -0.138 4.138 11 C 0.139 3.861 12 H 0.109 0.891 13 C 0.456 3.544 14 O -0.365 6.365 15 N -0.666 5.666 16 C 0.376 3.624 17 C -0.359 4.359 18 C -0.036 4.036 19 C -0.308 4.308 20 C 0.273 3.727 21 C -0.426 4.426 22 H 0.081 0.919 23 C 0.058 3.942 24 N -0.646 5.646 25 Si 0.891 3.109 26 H -0.272 1.272 27 H -0.278 1.278 28 H -0.263 1.263 29 N -0.476 5.476 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.397 0.603 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.265 11.590 11.690 16.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.102 3.898 3 C -0.195 4.195 4 C -0.242 4.242 5 O -0.285 6.285 6 C 0.424 3.576 7 O -0.406 6.406 8 N -0.362 5.362 9 C -0.013 4.013 10 C -0.176 4.176 11 C 0.033 3.967 12 H 0.126 0.874 13 C 0.235 3.765 14 O -0.224 6.224 15 N -0.315 5.315 16 C 0.137 3.863 17 C -0.385 4.385 18 C -0.060 4.060 19 C -0.331 4.331 20 C 0.148 3.852 21 C -0.457 4.457 22 H 0.099 0.901 23 C -0.172 4.172 24 N -0.265 5.265 25 Si 0.715 3.285 26 H -0.198 1.198 27 H -0.203 1.203 28 H -0.187 1.187 29 N -0.195 5.195 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.230 0.770 44 H 0.108 0.892 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.351 13.118 10.082 16.549 hybrid contribution -0.098 -0.758 -0.001 0.764 sum -0.449 12.360 10.081 15.956 Atomic orbital electron populations 1.22499 0.94363 1.05169 1.01844 1.21969 0.94056 0.91140 0.82644 1.21834 1.02113 0.92911 1.02628 1.22532 1.01521 1.04366 0.95823 1.86233 1.72286 1.23908 1.46109 1.17435 0.78916 0.79864 0.81380 1.91032 1.39385 1.69111 1.41070 1.48250 1.55195 1.12073 1.20706 1.23096 0.94198 0.96922 0.87085 1.23555 0.97264 0.95743 1.01083 1.22781 0.99314 0.81427 0.93213 0.87379 1.20476 0.82115 0.83033 0.90902 1.91239 1.36177 1.78182 1.16807 1.43324 1.72106 1.05144 1.10881 1.18550 0.93593 0.85044 0.89117 1.20460 1.25912 0.92286 0.99796 1.20552 0.95692 0.96637 0.93168 1.21605 1.17429 0.97176 0.96862 1.18340 0.88185 0.86635 0.92006 1.19556 1.38473 0.92074 0.95551 0.90070 1.26148 0.95810 0.97433 0.97817 1.70244 1.24048 1.02227 1.29947 0.86579 0.79636 0.78971 0.83279 1.19760 1.20350 1.18716 1.68611 1.19189 1.34725 0.96954 0.92639 0.91441 0.89214 0.91659 0.90402 0.91855 0.88300 0.91702 0.92383 0.89658 0.89762 0.88764 0.88186 0.76994 0.89157 0.88739 0.88689 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 8.37 37.16 0.31 -2.18 16 2 C 0.14 1.99 1.13 -90.62 -0.10 1.88 16 3 C -0.14 -1.45 8.85 37.16 0.33 -1.12 16 4 C -0.19 -2.97 8.37 37.16 0.31 -2.66 16 5 O -0.37 -6.03 9.87 -40.31 -0.40 -6.43 16 6 C 0.67 12.45 7.77 54.05 0.42 12.88 16 7 O -0.52 -11.60 10.47 -26.58 -0.28 -11.88 16 8 N -0.62 -9.64 3.41 -178.26 -0.61 -10.25 16 9 C 0.11 1.12 8.87 -2.98 -0.03 1.09 16 10 C -0.14 -1.42 7.85 -25.79 -0.20 -1.62 16 11 C 0.14 1.98 4.68 -67.99 -0.32 1.66 16 12 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 13 C 0.46 9.28 7.27 -10.99 -0.08 9.20 16 14 O -0.36 -9.43 10.15 -16.23 -0.16 -9.59 16 15 N -0.67 -12.97 5.38 -11.40 -0.06 -13.03 16 16 C 0.38 9.24 7.42 -154.97 -1.15 8.09 16 17 C -0.36 -8.12 9.96 -38.89 -0.39 -8.51 16 18 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 19 C -0.31 -7.93 9.83 -38.66 -0.38 -8.31 16 20 C 0.27 7.85 6.53 -85.00 -0.56 7.29 16 21 C -0.43 -12.05 9.13 -37.74 -0.34 -12.40 16 22 H 0.08 2.16 7.85 -52.48 -0.41 1.74 16 23 C 0.06 1.58 5.48 -17.34 -0.10 1.48 16 24 N -0.65 -18.62 9.12 55.55 0.51 -18.11 16 25 Si 0.89 20.06 29.56 -169.99 -5.03 15.03 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 28 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 29 N -0.48 -13.59 5.80 -10.25 -0.06 -13.64 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.53 5.88 -51.93 -0.31 1.22 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.10 2.01 5.88 -51.93 -0.31 1.71 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.10 1.24 8.09 -51.93 -0.42 0.82 16 43 H 0.40 5.73 8.70 -40.82 -0.36 5.37 16 44 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 45 H 0.09 1.86 8.06 -52.48 -0.42 1.43 16 46 H 0.09 2.28 8.06 -52.48 -0.42 1.86 16 47 H 0.27 7.61 8.29 -40.82 -0.34 7.27 16 LS Contribution 385.19 15.07 5.80 5.80 Total: -1.00 -36.99 385.19 -9.80 -46.79 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -6.85 Total: 9.75 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -2.67 Total: 5.55 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.22 Total: -55.03 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.84 Total: -27.90 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.99 -9.80 -46.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.597 kcal (2) G-P(sol) polarization free energy of solvation -36.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds