Wall clock time and date at job start Wed Apr 1 2020 05:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46723 * 2 1 4 4 C 1.52997 * 109.47243 * 240.00490 * 2 1 3 5 5 O 1.45199 * 109.47644 * 120.00084 * 2 1 3 6 6 C 1.34636 * 116.99792 * 60.00104 * 5 2 1 7 7 O 1.21516 * 120.00019 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00026 * 180.02562 * 6 5 2 9 9 C 1.47582 * 134.49250 * 0.02562 * 8 6 5 10 10 C 1.53943 * 86.11915 * 204.63852 * 9 8 6 11 11 C 1.47587 * 134.49570 * 179.97438 * 8 6 5 12 12 H 1.09001 * 113.86751 * 269.68132 * 11 8 6 13 13 C 1.50701 * 113.76580 * 41.05958 * 11 8 6 14 14 O 1.21273 * 120.00018 * 356.49099 * 13 11 8 15 15 N 1.34772 * 119.99798 * 176.49800 * 13 11 8 16 16 C 1.39278 * 119.99759 * 185.36360 * 15 13 11 17 17 C 1.39668 * 119.56967 * 185.36361 * 16 15 13 18 18 C 1.38662 * 119.49163 * 180.02562 * 17 16 15 19 19 C 1.38342 * 118.67023 * 359.95813 * 18 17 16 20 20 C 1.40582 * 119.13059 * 0.02562 * 19 18 17 21 21 C 1.41333 * 119.79053 * 179.97438 * 20 19 18 22 22 H 1.08007 * 119.99523 * 354.68751 * 21 20 19 23 23 C 1.40025 * 120.00459 * 174.68952 * 21 20 19 24 24 N 1.30746 * 119.99372 * 354.69629 * 23 21 20 25 25 Si 1.86800 * 120.00311 * 174.69282 * 23 21 20 26 26 H 1.48495 * 109.46752 * 94.99680 * 25 23 21 27 27 H 1.48497 * 109.46918 * 214.99797 * 25 23 21 28 28 H 1.48506 * 109.46849 * 334.99978 * 25 23 21 29 29 N 1.31903 * 119.57232 * 5.33755 * 16 15 13 30 30 H 1.08997 * 109.47210 * 299.99348 * 1 2 3 31 31 H 1.09002 * 109.47137 * 60.00225 * 1 2 3 32 32 H 1.09006 * 109.46752 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46934 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47583 * 300.00055 * 3 2 1 35 35 H 1.09005 * 109.47079 * 60.00311 * 3 2 1 36 36 H 1.08995 * 109.47125 * 299.99245 * 4 2 1 37 37 H 1.09002 * 109.47638 * 59.99591 * 4 2 1 38 38 H 1.09010 * 109.47262 * 179.97438 * 4 2 1 39 39 H 1.08998 * 113.77098 * 90.33585 * 9 8 6 40 40 H 1.08995 * 113.86848 * 318.95267 * 9 8 6 41 41 H 1.09000 * 113.74547 * 222.05081 * 10 9 8 42 42 H 1.08998 * 113.84123 * 90.74793 * 10 9 8 43 43 H 0.96999 * 120.00473 * 5.36006 * 15 13 11 44 44 H 1.07995 * 120.25970 * 359.97438 * 17 16 15 45 45 H 1.08004 * 120.66489 * 179.97438 * 18 17 16 46 46 H 1.08003 * 120.43726 * 180.29523 * 19 18 17 47 47 H 0.97001 * 119.99577 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6524 -1.9723 1.3382 7 8 0.9517 -2.5097 0.5034 8 7 2.0674 -2.6654 2.4170 9 6 2.8993 -2.3470 3.5937 10 6 3.1933 -3.8565 3.6637 11 6 1.8718 -4.0474 2.8965 12 1 1.0026 -4.1713 3.5425 13 6 1.9466 -5.0850 1.8061 14 8 2.0881 -4.7421 0.6515 15 7 1.8561 -6.3939 2.1141 16 6 2.0367 -7.3564 1.1237 17 6 1.8305 -8.7041 1.4267 18 6 2.0113 -9.6611 0.4396 19 6 2.3923 -9.2472 -0.8243 20 6 2.5839 -7.8757 -1.0665 21 6 2.9737 -7.4374 -2.3523 22 1 3.2067 -8.1593 -3.1212 23 6 3.0578 -6.0675 -2.6296 24 7 2.6769 -5.1947 -1.7336 25 14 3.7143 -5.4869 -4.2792 26 1 2.5795 -5.2437 -5.2056 27 1 4.4792 -4.2279 -4.0922 28 1 4.6060 -6.5276 -4.8511 29 7 2.3998 -6.9832 -0.0882 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1298 1.4426 0.0005 34 1 1.6765 1.9565 -0.8900 35 1 1.6765 1.9564 0.8900 36 1 1.6768 -1.7488 -1.2493 37 1 1.6766 -0.2073 -2.1393 38 1 3.1301 -0.7207 -1.2495 39 1 2.3314 -1.9701 4.4442 40 1 3.7744 -1.7393 3.3637 41 1 3.1750 -4.2608 4.6758 42 1 4.0759 -4.1601 3.1007 43 1 1.6653 -6.6657 3.0255 44 1 1.5334 -8.9989 2.4222 45 1 1.8574 -10.7086 0.6531 46 1 2.5365 -9.9678 -1.6157 47 1 2.7349 -4.2457 -1.9258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882471667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:11 Heat of formation + Delta-G solvation = -33.098771 kcal Electronic energy + Delta-G solvation = -32207.864218 eV Core-core repulsion = 27971.749073 eV Total energy + Delta-G solvation = -4236.115145 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.95616 -40.98325 -40.03133 -38.51994 -37.38342 -35.86102 -34.97594 -34.80395 -32.22540 -31.27830 -30.45355 -28.40681 -28.33889 -28.21521 -27.24959 -24.14100 -23.87710 -23.13968 -21.94906 -21.13382 -20.12429 -19.60106 -18.82204 -18.18424 -17.93585 -17.51543 -16.77772 -16.53278 -16.26566 -16.12009 -15.84638 -15.54558 -15.44804 -15.09616 -14.95175 -14.70062 -14.19688 -14.08076 -13.88018 -13.62801 -13.48089 -13.31560 -13.10888 -12.98441 -12.87933 -12.84713 -12.73176 -12.65355 -12.57378 -12.47330 -12.32653 -12.24587 -12.07789 -11.81916 -11.45362 -11.33383 -10.93159 -10.83251 -10.49194 -9.89043 -9.73154 -9.03826 -8.76378 -8.07731 -6.41121 0.92516 0.99520 1.25856 1.31509 1.44273 1.47898 1.96647 2.17228 2.21518 2.36516 2.88959 2.99668 3.39780 3.75733 3.77681 3.82679 3.92426 3.95809 4.06825 4.22535 4.32829 4.39872 4.49781 4.55489 4.57334 4.64600 4.71083 4.77129 4.78213 4.85685 4.87340 4.93178 4.96653 4.97795 5.09532 5.10127 5.22563 5.24885 5.28643 5.37614 5.57709 5.69806 5.89248 5.93921 6.14043 6.40257 6.69738 6.77089 6.89728 7.08868 7.48368 7.79774 8.36618 8.54679 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009848 B = 0.004692 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.438783 B = 5966.096444 C = 8210.251851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.129 3.871 3 C -0.129 4.129 4 C -0.180 4.180 5 O -0.368 6.368 6 C 0.655 3.345 7 O -0.569 6.569 8 N -0.632 5.632 9 C 0.115 3.885 10 C -0.118 4.118 11 C 0.139 3.861 12 H 0.150 0.850 13 C 0.440 3.560 14 O -0.425 6.425 15 N -0.652 5.652 16 C 0.352 3.648 17 C -0.343 4.343 18 C -0.035 4.035 19 C -0.334 4.334 20 C 0.240 3.760 21 C -0.470 4.470 22 H 0.084 0.916 23 C 0.011 3.989 24 N -0.680 5.680 25 Si 0.965 3.035 26 H -0.267 1.267 27 H -0.277 1.277 28 H -0.251 1.251 29 N -0.512 5.512 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.050 0.950 39 H 0.128 0.872 40 H 0.086 0.914 41 H 0.149 0.851 42 H 0.072 0.928 43 H 0.422 0.578 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.101 0.899 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.192 12.456 14.804 19.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.093 3.907 3 C -0.186 4.186 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.411 3.589 7 O -0.457 6.457 8 N -0.376 5.376 9 C -0.005 4.005 10 C -0.155 4.155 11 C 0.033 3.967 12 H 0.167 0.833 13 C 0.222 3.778 14 O -0.288 6.288 15 N -0.303 5.303 16 C 0.113 3.887 17 C -0.368 4.368 18 C -0.059 4.059 19 C -0.357 4.357 20 C 0.115 3.885 21 C -0.500 4.500 22 H 0.102 0.898 23 C -0.215 4.215 24 N -0.299 5.299 25 Si 0.786 3.214 26 H -0.192 1.192 27 H -0.202 1.202 28 H -0.174 1.174 29 N -0.231 5.231 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.146 0.854 40 H 0.105 0.895 41 H 0.167 0.833 42 H 0.091 0.909 43 H 0.260 0.740 44 H 0.153 0.847 45 H 0.155 0.845 46 H 0.120 0.880 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.265 13.968 13.303 19.291 hybrid contribution -0.182 -1.167 -0.779 1.415 sum -0.448 12.801 12.523 17.914 Atomic orbital electron populations 1.22408 0.94020 1.03057 1.03630 1.22300 0.94548 0.92720 0.81145 1.21837 1.02179 0.89983 1.04551 1.22445 1.00884 1.02053 0.98317 1.86236 1.72272 1.23049 1.46813 1.17869 0.78776 0.80352 0.81879 1.91017 1.41580 1.70101 1.43019 1.48702 1.55156 1.12555 1.21184 1.23473 0.94030 0.97015 0.85988 1.23519 0.93575 0.95852 1.02603 1.23104 1.03292 0.78815 0.91517 0.83253 1.21700 0.80272 0.83930 0.91918 1.91252 1.38530 1.79149 1.19829 1.43305 1.71307 1.04560 1.11135 1.19134 0.93158 0.87211 0.89167 1.20990 1.22937 0.91289 1.01619 1.21047 0.93888 0.98993 0.91992 1.21784 1.18861 0.96299 0.98715 1.18817 0.88826 0.88208 0.92672 1.19841 1.41017 0.92931 0.96255 0.89818 1.26989 0.95688 0.97181 1.01600 1.70484 1.25810 1.01613 1.31965 0.85459 0.79088 0.78420 0.78427 1.19218 1.20205 1.17382 1.68583 1.20277 1.35775 0.98496 0.90995 0.89384 0.93199 0.91557 0.88116 0.90245 0.93278 0.89466 0.93135 0.85407 0.89522 0.83318 0.90925 0.74016 0.84655 0.84519 0.88038 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.82 8.37 71.98 0.60 -4.22 16 2 C 0.13 3.73 1.13 -10.79 -0.01 3.72 16 3 C -0.13 -2.45 8.85 71.98 0.64 -1.82 16 4 C -0.18 -6.13 8.37 71.98 0.60 -5.53 16 5 O -0.37 -12.20 9.87 -55.45 -0.55 -12.75 16 6 C 0.66 25.38 7.77 129.79 1.01 26.39 16 7 O -0.57 -27.33 10.47 26.76 0.28 -27.05 16 8 N -0.63 -19.33 3.41 -948.31 -3.23 -22.56 16 9 C 0.12 1.98 8.87 86.48 0.77 2.74 16 10 C -0.12 -2.03 7.85 31.27 0.25 -1.78 16 11 C 0.14 3.70 4.68 44.36 0.21 3.91 16 12 H 0.15 2.76 8.14 -2.39 -0.02 2.74 16 13 C 0.44 18.21 7.27 87.66 0.64 18.85 16 14 O -0.42 -23.33 10.15 17.83 0.18 -23.15 16 15 N -0.65 -24.94 5.38 -308.37 -1.66 -26.60 16 16 C 0.35 17.41 7.42 133.25 0.99 18.39 16 17 C -0.34 -14.80 9.96 22.72 0.23 -14.58 16 18 C -0.04 -1.56 10.15 22.40 0.23 -1.33 16 19 C -0.33 -17.53 9.83 22.87 0.22 -17.31 16 20 C 0.24 14.49 6.53 40.19 0.26 14.75 16 21 C -0.47 -28.20 9.13 23.47 0.21 -27.98 16 22 H 0.08 4.72 7.85 -2.91 -0.02 4.70 16 23 C 0.01 0.66 5.48 85.29 0.47 1.13 16 24 N -0.68 -42.25 9.12 21.84 0.20 -42.05 16 25 Si 0.96 43.85 29.56 68.60 2.03 45.88 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 28 H -0.25 -10.71 7.11 99.48 0.71 -10.00 16 29 N -0.51 -30.55 5.80 -186.35 -1.08 -31.63 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.05 1.81 5.88 -2.38 -0.01 1.80 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.05 2.21 5.88 -2.39 -0.01 2.19 16 37 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.15 1.02 8.14 -2.39 -0.02 1.01 16 42 H 0.07 1.70 8.09 -2.39 -0.02 1.68 16 43 H 0.42 11.03 8.70 -92.71 -0.81 10.23 16 44 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 45 H 0.14 4.87 8.06 -2.91 -0.02 4.85 16 46 H 0.10 5.01 8.06 -2.91 -0.02 4.98 16 47 H 0.26 16.10 8.29 -92.71 -0.77 15.33 16 Total: -1.00 -92.52 385.19 3.67 -88.85 By element: Atomic # 1 Polarization: 35.53 SS G_CDS: 0.19 Total: 35.73 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 7.31 Total: 15.33 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -5.77 Total: -122.83 kcal Atomic # 8 Polarization: -62.87 SS G_CDS: -0.09 Total: -62.95 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -92.52 3.67 -88.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.754 kcal (2) G-P(sol) polarization free energy of solvation -92.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds